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Species Resource name RRC ID Author Title Journal Published Volume Pages Pubmed ID DOI
Tomato   TOMJPF00001   35164   Shikata M, Ezura H.   Micro-Tom Tomato as an Alternative Plant Model System: Mutant Collection and Efficient Transformation.   Methods Mol. Biol.   2016   1363   47-55   26577780   10.1007/978-1-4939-3115-6_5  
Tomato   TOMJPF00001(Micro-Tom)   35711   Shikata M, Hoshikawa K, Ariizumi T, Fukuda N, Yamazaki Y, Ezura H.   TOMATOMA Update: Phenotypic and Metabolite Information in the Micro-Tom Mutant Resource.   Plant Cell Physiol.   2015 -12 -30       26719120   10.1093/pcp/pcv194  
Tomato   TOMJPF00001   35163   Huang YX, Yin YG, Sanuki A, Fukuda N, Ezura H, Matsukura C.   Phosphoenolpyruvate carboxykinase (PEPCK) deficiency affects the germination, growth and fruit sugar content in tomato (Solanum lycopersicum L.).   Plant Physiol. Biochem.   2015 -11   96   417-25   26381194   10.1016/j.plaphy.2015.08.021  
Tomato   S. lycopersicum cv. Micro-Tom   36204   Nagata M, Yamamoto N, Shigeyama T, Terasawa Y, Anai T, Sakai T, Inada S, Arima S, Hashiguchi M, Akashi R, Nakayama H, Ueno D, Hirsch AM, Suzuki A.   Red/Far Red Light Controls Arbuscular Mycorrhizal Colonization via Jasmonic Acid and Strigolactone Signaling.   Plant Cell Physiol.   2015 -11   56(11)   2100-9   26412782   10.1093/pcp/pcv135  
Tomato     34532   Mubarok S, Okabe Y, Fukuda N, Ariizumi T, Ezura H.   Potential Use of a Weak Ethylene Receptor Mutant, Sletr1-2, as Breeding Material To Extend Fruit Shelf Life of Tomato.   J. Agric. Food Chem.   2015 -9 -1       26208257   10.1021/acs.jafc.5b02742  
Tomato   TOMJPF00001(Micro-Tom)   33523   Takayama M, Koike S, Kusano M, Matsukura C, Saito K, Ariizumi T, Ezura H.   Tomato Glutamate Decarboxylase Genes SlGAD2 and SlGAD3 Play Key Roles in Regulating γ-Aminobutyric Acid Levels in Tomato (Solanum lycopersicum).   Plant Cell Physiol.   2015 -8   56(8)   1533-45   26009591   10.1093/pcp/pcv075  
Tomato     34531   Takayama M, Ezura H.   How and why tomato fruits accumulate a large amount of GABA in the fruit?   Front Plant Sci.   2015 -7 -23   6   612     10.3389/fpls.2015.00612  
Tomato   TOMJPF00001(Micro-Tom), TOMJPE2811-1(iaa9-3), TOMJPE5803-1...   33522   Shinozaki Y, Hao S, Kojima M, Sakakibara H, Ozeki-Iida Y, Zheng Y, Fei Z, Zhong S, Giovannoni JJ, Rose JK, Okabe Y, Heta Y, Ezura H, Ariizumi T.   Ethylene suppresses tomato (Solanum lycopersicum) fruit set through modification of gibberellin metabolism.   Plant J.   2015 -7   83(2)   237-51   25996898   10.1111/tpj.12882  
Tomato   TOMJPF00001 (Micro-Tom)   33160   Iwase A, Mita K, Nonaka S, Ikeuchi M, Koizuka C, Ohnuma M, Ezura H, Imamura J, Sugimoto K.   WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.   J. Plant Res.   2015 -5   128(3)   389-97   25810222   10.1007/s10265-015-0714-y  
Tomato   TOMJPF00001 (Micro-Tom)   33293   Tsuchiya M, Satoh S, Iwai H   Distribution of XTH, Expansin, and Secondary-wall-related CesA in Floral and Fruit Abscission Zones during Fruit Development in Tomato (Solanum lycopersicum)   Frontiers in Plant Science   2015 -5         10.3389/fpls.2015.00323  
Tomato   TOMJPG1269-1, TOMJPG1679-1, TOMJPG2893-1, TOMJPE6018-1...   32672   Shirasawa K, Hirakawa H, Nunome T, Tabata S, Isobe S.   Genome-wide survey of artificial mutations induced by ethyl methanesulfonate and gamma rays in tomato.   Plant Biotechnol. J.   2015 -2 -16       25689669   10.1111/pbi.12348  
Tomato   TOMJPF00001 (Micro-Tom)   32737   Yamazaki H, Suzui N, Yin YG, Kawachi N, Ishii S, Shimada H, Fujimaki S   Live-imaging evaluation of the efficacy of elevated CO 2 concentration in a closed cultivation system for the improvement of bioproduction in tomato fruits   Plant Biotechnology.   2015 -2 -6         10.5511/plantbiotechnology.14.1210a  
Tomato   TOMJPF00001 (Micro-Tom)   32172   Sawai S, Ohyama K, Yasumoto S, Seki H, Sakuma T, Yamamoto T, Takebayashi Y, Kojima M, Sakakibara H, Aoki T, Muranaka T, Saito K, Umemoto N.   Sterol side chain reductase 2 is a key enzyme in the biosynthesis of cholesterol, the common precursor of toxic steroidal glycoalkaloids in potato.   Plant Cell   2014 -9   26(9)   3763-74   25217510   10.1105/tpc.114.130096  
Tomato   TOMJPF00001(Micro-Tom)   30626   Ariizumi T, Kishimoto S, Kakami R, Maoka T, Hirakawa H, Suzuki Y, Ozeki Y, Shirasawa K, Bernillon S, Okabe Y, Moing A, Asamizu E, Rothan C, Ohmiya A, Ezura H.   Identification of the carotenoid modifying gene PALE YELLOW PETAL 1 as an essential factor in xanthophyll esterification and yellow flower pigmentation in tomato (Solanum lycopersicum).   Plant J.   2014 -8   79(3)   453-65   24888879   10.1111/tpj.12570  
Tomato   TOMJPF00001 (Micro-Tom)   32170   Ohyama K, Okawa A, Fujimoto Y.   Biosynthesis of steroidal alkaloids in Solanaceae plants: incorporation of 3β-hydroxycholest-5-en-26-al into tomatine with tomato seedlings.   Bioorg. Med. Chem. Lett.   2014 -8 -1   24(15)   3556-8   24909078   10.1016/j.bmcl.2014.05.048  
Tomato   TOMJPF00001(Micro-Tom), TOMJPE0206-1   29185   Chusreeaeom K, Ariizumi T, Asamizu E, Okabe Y, Shirasawa K, Ezura H.   A novel tomato mutant, Solanum lycopersicum elongated fruit1 (Slelf1), exhibits an elongated fruit shape caused by increased cell layers in the proximal region of the ovary.   Mol. Genet. Genomics   2014 -6   289(3)   399-409   24519535   10.1007/s00438-014-0822-8  
Tomato     30958   Reuscher S, Akiyama M, Yasuda T, Makino H, Aoki K, Shibata D, Shiratake K.   The sugar transporter inventory of tomato: genome-wide identification and expression analysis.   Plant Cell Physiol.   2014 -6   55(6)   1123-41   24833026   10.1093/pcp/pcu052  
Tomato     30491   Chusreeaeom K, Ariizumi T, Asamizu E, Okabe T, Shirasawa K, Ezura H.   Regulatory change in cell division activity and genetic mapping of a tomato (Solanum lycopersicum L.) elongated-fruit mutant.   Plant Biotechnology.   2014 -5 -28   31   149-158     10.5511/plantbiotechnology.14.0204a  
Tomato   TOMJPF00001(Micro-Tom)   28463   Kobayashi M, Nagasaki H, Garcia V, Just D, Bres C, Mauxion JP, Le Paslier MC, Brunel D, Suda K, Minakuchi Y, Toyoda A, Fujiyama A, Toyoshima H, Suzuki T, Igarashi K, Rothan C, Kaminuma E, Nakamura Y, Yano K, Aoki K.   Genome-wide analysis of intraspecific DNA polymorphism in 'Micro-Tom', a model cultivar of tomato (Solanum lycopersicum).   Plant Cell Physiol.   2014 -2   55(2)   445-54   24319074   10.1093/pcp/pct181  
Tomato     32241   Fukami-Kobayashi K, Nakamura Y, Tamura T, Kobayashi M.   SABRE2: a database connecting plant EST/full-length cDNA clones with Arabidopsis information.   Plant Cell Physiol.   2014 -1   55(1)   e5   24323624   10.1093/pcp/pct177  
Tomato   TOMJPF00001(Micro-Tom)   30250   Takizawa A, Hyodo H, Wada K, Ishii T, Satoh S, Iwai H.   Regulatory specialization of xyloglucan (XG) and glucuronoarabinoxylan (GAX) in pericarp cell walls during fruit ripening in tomato (Solanum lycopersicum).   PLoS ONE   2014   9(2)   e89871   24587088   10.1371/journal.pone.0089871  
Tomato   TOMJPF00001(Micro-Tom)   30670   Uraguchi S, Kato Y, Hanaoka H, Miwa K, Fujiwara T.   Generation of boron-deficiency-tolerant tomato by overexpressing an Arabidopsis thaliana borate transporter AtBOR1.   Front Plant Sci   2014   5   125   24744768   10.3389/fpls.2014.00125  
Tomato   TOMJPF00001 (Micro-Tom)   31349   Wada T, Kunihiro A, Tominaga-Wada R.   Arabidopsis CAPRICE (MYB) and GLABRA3 (bHLH) control tomato (Solanum lycopersicum) anthocyanin biosynthesis.   PLoS ONE   2014   9(9)   e109093   25268379   10.1371/journal.pone.0109093  
Tomato   TOMJPF00001(Micro-Tom), TOMJPF00008(Solanum pen...   27304   Shirasawa K, Fukuoka H, Matsunaga H, Kobayashi Y, Kobayashi I, Hirakawa H, Isobe S, Tabata S.   Genome-wide association studies using single nucleotide polymorphism markers developed by re-sequencing of the genomes of cultivated tomato.   DNA Res.   2013 -12   20(6)   593-603   23903436   10.1093/dnares/dst033  
Tomato   TOMJPF00002(Moneymaker)   27873   Someya T, Nonaka S, Nakamura K, Ezura H.   Increased 1-aminocyclopropane-1-carboxylate deaminase activity enhances Agrobacterium tumefaciens-mediated gene delivery into plant cells.   Microbiologyopen   2013 -10   2(5)   873-80   24000136   10.1002/mbo3.123  
Tomato     27908   Baldet P, Bres C, Okabe Y, Mauxion JP, Just D, Bournonville C, Ferrand C, Mori M, Ezura H, Rothan C   Investigating the role of vitamin C in tomato through TILLING identification of ascorbate-deficient tomato mutants.   Plant Biotechnology.   2013 -9 -11   30   309-314     10.5511/plantbiotechnology.13.0622b  
Tomato     27907   Just D, Garcia V, Ferrand C, Bres C, Mauxion JP, Petit J, Jorly J, Assali J, Boumonville, Ferrand C, Baldet P, Lemaire-Chamley M, Mori K, Okabe Y, Ariizumi T, Asamizu E, Ezura H, Rothan C   Micro-Tom mutants for functional analysis of target genes and discovery of new alleles in tomato.   Plant Biotechnology.   2013 -9 -11   30   225-231     10.5511/plantbiotechnology.13.0622a  
Tomato   TOMJPF00013-04   27872   Kimbara J, Yoshida M, Ito H, Kitagawa M, Takada W, Hayashi K, Shibutani Y, Kusano M, Okazaki Y, Nakabayashi R, Mori T, Saito K, Ariizumi T, Ezura H.   Inhibition of CUTIN DEFICIENT 2 Causes Defects in Cuticle Function and Structure and Metabolite Changes in Tomato Fruit.   Plant Cell Physiol.   2013 -9   54(9)   1535-48   23912028   10.1093/pcp/pct100  
Tomato   TOMJPF00001(Micro-Tom)   27331   Terao A, Hyodo H, Satoh S, Iwai H.   Changes in the distribution of cell wall polysaccharides in early fruit pericarp and ovule, from fruit set to early fruit development, in tomato (Solanum lycopersicum).   J. Plant Res.   2013 -9   126(5)   719-28   23455617   10.1007/s10265-013-0555-5  
Tomato     27870   Mori K, Lemaire-Chamley M, Nonaka S, Asamizu E, Mizoguchi T, Ezura H, Rothan C.   Comparative analysis of common genes involved in early fruit development of tomato and grape.   Plant Biotechnology.   2013 -8 -10   30   295-300     10.5511/plantbiotechnology.13.0321a  
Tomato     27871   Goto Y, Nonaka S, Yin Y, Koiwa T, Asamizu E, Ezura H, Matsukura C.   Isolation and characterization of the ADP-glucose pyrophsphorylase small subunit gene (AgpS1) promoter in tomato (Solanum lycopersicum L.).   Plant Biotechnology.   2013 -8 -7   30   279-286     10.5511/plantbiotechnology.13.0603a  
Tomato     27767   Yan R, Yokotani N, Yamaoka T, Ushijima K, Nakano R, Yano K, Aoki K, Kubo Y   Characterization of ripening-associated genes using a tomato DNA macroarray, 1-methylcyclopropene, and ripening-impaired mutants.   Postharvest Biol Technol.   2013 -7 -21   86   159-170     10.1016/j.postharvbio.2013.06.028  
Tomato     27337   Nukumizu Y, Wada T, Tominaga-Wada R.   Tomato (Solanum lycopersicum) homologs of TRIPTYCHON (SlTRY) and GLABRA3 (SlGL3) are involved in anthocyanin accumulation.   Plant Signal Behav   2013 -7   8(7)   e24575   23603939   10.4161/psb.24575  
Tomato   TOMJPF00001, TOMJPF00008, TOMJPF00009-1, TOMJPF00010-1...   30505   Hirakawa H, Shirasawa K, Ohyama A, Fukuoka H, Aoki K, Rothan C, Sato S, Isobe S, Tabata S.   Genome-wide SNP genotyping to infer the effects on gene functions in tomato.   DNA Res.   2013 -6   20(3)   221-33   23482505   10.1093/dnares/dst005  
Tomato     27335   Narusaka M, Kubo Y, Hatakeyama K, Imamura J, Ezura H, Nanasato Y, Tabei Y, Takano Y, Shirasu K, Narusaka Y.   Breaking restricted taxonomic functionality by dual resistance genes.   Plant Signal Behav   2013 -6   8(6)   e24244   23518587   10.4161/psb.24244  
Tomato     27332   Iwai H, Terao A, Satoh S.   Changes in distribution of cell wall polysaccharides in floral and fruit abscission zones during fruit development in tomato (Solanum lycopersicum).   J. Plant Res.   2013 -5   126(3)   427-37   23124772   10.1007/s10265-012-0536-0  
Tomato   TOMJPF00001   27314   Koike S, Matsukura C, Takayama M, Asamizu E, Ezura H.   Suppression of γ-aminobutyric acid (GABA) transaminases induces prominent GABA accumulation, dwarfism and infertility in the tomato (Solanum lycopersicum L.).   Plant Cell Physiol.   2013 -5   54(5)   793-807   23435575   10.1093/pcp/pct035  
Tomato   TOMJPF00001 (Micro-Tom)   32173   Ohyama K, Okawa A, Moriuchi Y, Fujimoto Y.   Biosynthesis of steroidal alkaloids in Solanaceae plants: involvement of an aldehyde intermediate during C-26 amination.   Phytochemistry   2013 -5   89   26-31   23473422   10.1016/j.phytochem.2013.01.010  
Tomato   TOMJPF00001   27329   Kurokawa N, Hirai T, Takayama M, Hiwasa-Tanase K, Ezura H.   An E8 promoter-HSP terminator cassette promotes the high-level accumulation of recombinant protein predominantly in transgenic tomato fruits: a case study of miraculin.   Plant Cell Rep.   2013 -4   32(4)   529-36   23306632   10.1007/s00299-013-1384-7  
Tomato   TOMJPF00001(Micro-Tom)   27333   Aoki K, Ogata Y, Igarashi K, Yano K, Nagasaki H, Kaminuma E, Toyoda A.   Functional genomics of tomato in a post-genome-sequencing phase.   Breed Sci.   2013 -3   63(1)   14-20   23641177   10.1270/jsbbs.63.14  
Tomato     27326   Ariizumi T, Shinozaki Y, Ezura H.   Genes that influence yield in tomato.   Breed Sci.   2013 -3   63(1)   3-13   23641176   10.1270/jsbbs.63.3  
Tomato     27325   Okabe Y, Ariizumi T, Ezura H.   Updating the Micro-Tom TILLING platform.   Breed Sci.   2013 -3   63(1)   42-8   23641180   10.1270/jsbbs.63.42  
Tomato     27334   Shirasawa K, Hirakawa H.   DNA marker applications to molecular genetics and genomics in tomato.   Breed Sci.   2013 -3   63(1)   21-30   23641178   10.1270/jsbbs.63.21  
Tomato     27341   Mishima T, Kido N, Nakashima S, Yamakawa M, Miyaji N, Soli KW, Honjoh K, Bari ML, Miyamoto T   Investigation of possible situation of internalization of Salmonella Enteritidis in tomato fruits and survival during tomato plant cultivation   Food Sci Technol Res.   2013 -1 -11   18(6)   869-877     10.3136/fstr.18.869  
Tomato   TOMJPF00001(Micro-Tom)   28129   Hyodo H, Terao A, Furukawa J, Sakamoto N, Yurimoto H, Satoh S, Iwai H.   Tissue specific localization of pectin-Ca²⁺ cross-linkages and pectin methyl-esterification during fruit ripening in tomato (Solanum lycopersicum).   PLoS ONE   2013   8(11)   e78949   24236073   10.1371/journal.pone.0078949  
Tomato     28744   Iwase A, Mitsuda N, Ikeuchi M, Ohnuma M, Koizuka C, Kawamoto K, Imamura J, Ezura H, Sugimoto K.   Arabidopsis WIND1 induces callus formation in rapeseed, tomato, and tobacco.   Plant Signal Behav   2013   8(12)   e27432   24389814   10.4161/psb.27432  
Tomato     27328   Narusaka M, Kubo Y, Hatakeyama K, Imamura J, Ezura H, Nanasato Y, Tabei Y, Takano Y, Shirasu K, Narusaka Y.   Interfamily transfer of dual NB-LRR genes confers resistance to multiple pathogens.   PLoS ONE   2013   8(2)   e55954   23437080   10.1371/journal.pone.0055954  
Tomato   TOMJPF00001(Micro-Tom)   28696   Reuscher S, Akiyama M, Mori C, Aoki K, Shibata D, Shiratake K.   Genome-wide identification and expression analysis of aquaporins in tomato.   PLoS ONE   2013   8(11)   e79052   24260152   10.1371/journal.pone.0079052  
Tomato   TOMJPF00001 (Micro-Tom)   27336   Tominaga-Wada R, Nukumizu Y, Sato S, Wada T.   Control of plant trichome and root-hair development by a tomato (Solanum lycopersicum) R3 MYB transcription factor.   PLoS ONE   2013   8(1)   e54019   23326563   10.1371/journal.pone.0054019  
Tomato   TOMJPF00001(Micro-Tom), TOMJPF00002(Moneymaker)...   15531   Ejima C, Uwatoko T, Ngan BT, Honda H, Shimizu N, Kiyohara S, Hamasaki R, Sawa S   SNPs of CLAVATA receptors in tomato, in the context of root-knot nematode infection.   Nematological Research   2012 -12   41(2)   35-40      
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Species Resource Name Application No Publication No Title of the invention Inventor's name Applicant External collaborator Filing Date Publication Date
Tomato    特願2013-231495  特開2015-089368  変異型植物  江面 浩 有泉 亨 篠崎 良仁 金原 淳司 草野 都 福島 敦史 斉藤 和季  国立大学法人 筑波大学 カゴメ株式会社 国立研究開発法人理化学研究所    2013-11-7  2015-5-11 
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