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Species Resource name RRC ID Author Title Journal Published Volume Pages Pubmed ID DOI
Prokaryotes B. subtilis     35656   Wiedermannová J, Sudzinová P, Kovaľ T, Rabatinová A, Šanderova H, Ramaniuk O, Rittich Š, Dohnálek J, Fu Z, Halada P, Lewis P, Krásny L.   Characterization of HelD, an interacting partner of RNA polymerase from Bacillus subtilis.   Nucleic Acids Res.   2014 -4   42(8)   5151-63   24520113   10.1093/nar/gku113  
Prokaryotes B. subtilis   MBS375, MBS376, MBS377, MBS378, MBS379, MBS380...   33577   Yano K, Wada T, Suzuki S, Tagami K, Matsumoto T, Shiwa Y, Ishige T, Kawaguchi Y, Masuda K, Akanuma G, Nanamiya H, Niki H, Yoshikawa H, Kawamura F.   Multiple rRNA operons are essential for efficient cell growth and sporulation as well as outgrowth in Bacillus subtilis.   Microbiology (Reading, Engl.)   2013 -11   159(Pt 11)   2225-36   23970567   10.1099/mic.0.067025-0  
Prokaryotes B. subtilis   MBS340, MBS341, MBS342, MBS343, MBS344, MBS345...   33576   Tojo S, Hirooka K, Fujita Y.   Expression of kinA and kinB of Bacillus subtilis, necessary for sporulation initiation, is under positive stringent transcription control.   J. Bacteriol.   2013 -4   195(8)   1656-65   23378509   10.1128/JB.02131-12  
Prokaryotes B. subtilis   JJS-DIn001, JJS-DIn002, JJS-DIn003, JJS-DIn004...   33711   Tanaka K, Henry CS, Zinner JF, Jolivet E, Cohoon MP, Xia F, Bidnenko V, Ehrlich SD, Stevens RL, Noirot P.   Building the repertoire of dispensable chromosome regions in Bacillus subtilis entails major refinement of cognate large-scale metabolic model.   Nucleic Acids Res.   2013 -1 -7   41(1)   687-99   23109554   10.1093/nar/gks963  
Prokaryotes B. subtilis   MBS15, MBS16, MBS17, MBS18, MBS19, MBS20...   33575   Akanuma G, Nanamiya H, Natori Y, Yano K, Suzuki S, Omata S, Ishizuka M, Sekine Y, Kawamura F.   Inactivation of ribosomal protein genes in Bacillus subtilis reveals importance of each ribosomal protein for cell proliferation and cell differentiation.   J. Bacteriol.   2012 -11   194(22)   6282-91   23002217   10.1128/JB.01544-12  
Prokaryotes B. subtilis   MBS356, MBS357, MBS358, MBS359, MBS360, MBS361...   33573   Hirooka K, Edahiro T, Kimura K, Fujita Y.   Direct and indirect regulation of the ycnKJI operon involved in copper uptake through two transcriptional repressors, YcnK and CsoR, in Bacillus subtilis.   J. Bacteriol.   2012 -10   194(20)   5675-87   22904286   10.1128/JB.00919-12  
Prokaryotes B. subtilis   MBS31, MBS32, MBS33, MBS34, MBS404, MBS405...   33574   Tagami K, Nanamiya H, Kazo Y, Maehashi M, Suzuki S, Namba E, Hoshiya M, Hanai R, Tozawa Y, Morimoto T, Ogasawara N, Kageyama Y, Ara K, Ozaki K, Yoshida M, Kuroiwa H, Kuroiwa T, Ohashi Y, Kawamura F.   Expression of a small (p)ppGpp synthetase, YwaC, in the (p)ppGpp(0) mutant of Bacillus subtilis triggers YvyD-dependent dimerization of ribosome.   Microbiologyopen   2012 -6   1(2)   115-34   22950019   10.1002/mbo3.16  
Prokaryotes B. subtilis   MBS35, MBS36, MBS37, MBS38   33572   Kobayashi K, Sudiarta IP, Kodama T, Fukushima T, Ara K, Ozaki K, Sekiguchi J.   Identification and characterization of a novel polysaccharide deacetylase C (PdaC) from Bacillus subtilis.   J. Biol. Chem.   2012 -3 -23   287(13)   9765-76   22277649   10.1074/jbc.M111.329490  
Prokaryotes B. subtilis     35432   Segev E, Smith Y, Ben-Yehuda S.   RNA dynamics in aging bacterial spores.   Cell   2012 -1 -20   148(1-2)   139-49   22209493   10.1016/j.cell.2011.11.059  
Prokaryotes B. subtilis     35400   Belitsky BR.   Indirect repression by Bacillus subtilis CodY via displacement of the activator of the proline utilization operon.   J. Mol. Biol.   2011 -10 -21   413(2)   321-36   21840319   10.1016/j.jmb.2011.08.003  
Prokaryotes B. subtilis     35424   Brinsmade SR, Sonenshein AL.   Dissecting complex metabolic integration provides direct genetic evidence for CodY activation by guanine nucleotides.   J. Bacteriol.   2011 -10   193(20)   5637-48   21856856   10.1128/JB.05510-11  
Prokaryotes B. subtilis   MBS306, MBS314, MBS315, MBS318, MBS319, MBS320...   33569   Tojo S, Satomura T, Matsuoka H, Hirooka K, Fujita Y.   Catabolite repression of the Bacillus subtilis FadR regulon, which is involved in fatty acid catabolism.   J. Bacteriol.   2011 -5   193(10)   2388-95   21398533   10.1128/JB.00016-11  
Prokaryotes B. subtilis     35352   Dubey GP, Ben-Yehuda S.   Intercellular nanotubes mediate bacterial communication.   Cell   2011 -2 -18   144(4)   590-600   21335240   10.1016/j.cell.2011.01.015  
Prokaryotes E. coli, Prokaryotes B. subtilis   ME9666, MBS336, MBS337, MBS338   30187   Hirooka K, Fujita Y.   Identification of aromatic residues critical to the DNA binding and ligand response of the Bacillus subtilis QdoR (YxaF) repressor antagonized by flavonoids.   Biosci. Biotechnol. Biochem.   2011   75(7)   1325-34   21737930   10.1271/bbb.110098  
Prokaryotes B. subtilis   TMO310, TMO311   33601   Morimoto T, Ara K, Ozaki K, Ogasawara N.   A simple method for introducing marker-free deletions in the Bacillus subtilis genome.   Methods Mol. Biol.   2011   765   345-58   21815102   10.1007/978-1-61779-197-0_20  
Prokaryotes B. subtilis   MGNA-C496(YQEVd)   35257   Anton BP, Russell SP, Vertrees J, Kasif S, Raleigh EA, Limbach PA, Roberts RJ.   Functional characterization of the YmcB and YqeV tRNA methylthiotransferases of Bacillus subtilis.   Nucleic Acids Res.   2010 -10   38(18)   6195-205   20472640   10.1093/nar/gkq364  
Prokaryotes B. subtilis   MBS1, MBS2, MBS3, MBS4, MBS5, MBS6, MBS7   33566   Nanamiya H, Sato M, Masuda K, Sato M, Wada T, Suzuki S, Natori Y, Katano M, Akanuma G, Kawamura F.   Bacillus subtilis mutants harbouring a single copy of the rRNA operon exhibit severe defects in growth and sporulation.   Microbiology (Reading, Engl.)   2010 -10   156(Pt 10)   2944-52   20634236   10.1099/mic.0.035295-0  
Prokaryotes B. subtilis   MBS81   33565   Morinaga T, Kobayashi K, Ashida H, Fujita Y, Yoshida K.   Transcriptional regulation of the Bacillus subtilis asnH operon and role of the 5'-proximal long sequence triplication in RNA stabilization.   Microbiology (Reading, Engl.)   2010 -6   156(Pt 6)   1632-41   20185509   10.1099/mic.0.036582-0  
Prokaryotes B. subtilis   MGNA-B191(BFS3018), MGNA-A443(BFS1058)   35277   Morinaga T, Ashida H, Yoshida K.   Identification of two scyllo-inositol dehydrogenases in Bacillus subtilis.   Microbiology (Reading, Engl.)   2010 -5   156(Pt 5)   1538-46   20133360   10.1099/mic.0.037499-0  
Prokaryotes B. subtilis   MBS295, MBS296, MBS311, MBS312, MBS313, MBS317...   33564   Tojo S, Kumamoto K, Hirooka K, Fujita Y.   Heavy involvement of stringent transcription control depending on the adenine or guanine species of the transcription initiation site in glucose and pyruvate metabolism in Bacillus subtilis.   J. Bacteriol.   2010 -3   192(6)   1573-85   20081037   10.1128/JB.01394-09  
Prokaryotes B. subtilis   TMO310, TMO311   33602   Morimoto T, Ara K, Ozaki K, Ogasawara N.   A new simple method to introduce marker-free deletions in the Bacillus subtilis genome.   Genes Genet. Syst.   2009 -8   84(4)   315-8   20057169    
Prokaryotes B. subtilis   MBS324, MBS325, MBS326, MBS327, MBS328   33563   Hirooka K, Danjo Y, Hanano Y, Kunikane S, Matsuoka H, Tojo S, Fujita Y.   Regulation of the Bacillus subtilis divergent yetL and yetM genes by a transcriptional repressor, YetL, in response to flavonoids.   J. Bacteriol.   2009 -6   191(11)   3685-97   19329649   10.1128/JB.00202-09  
Prokaryotes B. subtilis   MBS155, MBS297   33562   Inaoka T, Satomura T, Fujita Y, Ochi K.   Novel gene regulation mediated by overproduction of secondary metabolite neotrehalosadiamine in Bacillus subtilis.   FEMS Microbiol. Lett.   2009 -2   291(2)   151-6   19087206   10.1111/j.1574-6968.2008.01450.x  
Prokaryotes B. subtilis   MBS39, MBS40, MBS41, MBS42, MBS43, MBS44...   33561   Yamamoto H, Hashimoto M, Higashitsuji Y, Harada H, Hariyama N, Takahashi L, Iwashita T, Ooiwa S, Sekiguchi J.   Post-translational control of vegetative cell separation enzymes through a direct interaction with specific inhibitor IseA in Bacillus subtilis.   Mol. Microbiol.   2008 -10   70(1)   168-82   18761694   10.1111/j.1365-2958.2008.06398.x  
Prokaryotes B. subtilis   MBS241, MBS261, MBS262, MBS298, MBS307, MBS309...   33560   Tojo S, Satomura T, Kumamoto K, Hirooka K, Fujita Y.   Molecular mechanisms underlying the positive stringent response of the Bacillus subtilis ilv-leu operon, involved in the biosynthesis of branched-chain amino acids.   J. Bacteriol.   2008 -9   190(18)   6134-47   18641142   10.1128/JB.00606-08  
Prokaryotes B. subtilis   TMO310, TMO311, NED0100, NED0202, NED0802...   33710   Morimoto T, Kadoya R, Endo K, Tohata M, Sawada K, Liu S, Ozawa T, Kodama T, Kakeshita H, Kageyama Y, Manabe K, Kanaya S, Ara K, Ozaki K, Ogasawara N.   Enhanced recombinant protein productivity by genome reduction in Bacillus subtilis.   DNA Res.   2008 -4 -30   15(2)   73-81   18334513   10.1093/dnares/dsn002  
Prokaryotes E. coli, Prokaryotes B. subtilis   ME9655, ME9656, ME9664, MBS169, MBS170, MBS171   30185   Yoshida K, Yamaguchi M, Morinaga T, Kinehara M, Ikeuchi M, Ashida H, Fujita Y.   myo-Inositol catabolism in Bacillus subtilis.   J. Biol. Chem.   2008 -4 -18   283(16)   10415-24   18310071   10.1074/jbc.M708043200  
Prokaryotes B. subtilis   MBS8, MBS9, MBS10, MBS11, MBS12, MBS13,...   33558   Nanamiya H, Kasai K, Nozawa A, Yun CS, Narisawa T, Murakami K, Natori Y, Kawamura F, Tozawa Y.   Identification and functional analysis of novel (p)ppGpp synthetase genes in Bacillus subtilis.   Mol. Microbiol.   2008 -1   67(2)   291-304   18067544   10.1111/j.1365-2958.2007.06018.x  
Prokaryotes B. subtilis   MBS48, MBS49, MBS50, MBS51   33556   Fukushima T, Yao Y, Kitajima T, Yamamoto H, Sekiguchi J.   Characterization of new L,D-endopeptidase gene product CwlK (previous YcdD) that hydrolyzes peptidoglycan in Bacillus subtilis.   Mol. Genet. Genomics   2007 -10   278(4)   371-83   17588176   10.1007/s00438-007-0255-8  
Prokaryotes B. subtilis   MBS292, MBS293, MBS299, MBS300, MBS301, MBS302...   33555   Hirooka K, Kunikane S, Matsuoka H, Yoshida K, Kumamoto K, Tojo S, Fujita Y.   Dual regulation of the Bacillus subtilis regulon comprising the lmrAB and yxaGH operons and yxaF gene by two transcriptional repressors, LmrA and YxaF, in response to flavonoids.   J. Bacteriol.   2007 -7   189(14)   5170-82   17483215   10.1128/JB.00079-07  
Prokaryotes B. subtilis   MBS284, MBS285, MBS286, MBS287, MBS288, MBS280   33554   Matsuoka H, Hirooka K, Fujita Y.   Organization and function of the YsiA regulon of Bacillus subtilis involved in fatty acid degradation.   J. Biol. Chem.   2007 -2 -23   282(8)   5180-94   17189250   10.1074/jbc.M606831200  
Prokaryotes B. subtilis   MBS52, MBS53   33553   Serizawa M, Kodama K, Yamamoto H, Kobayashi K, Ogasawara N, Sekiguchi J.   Functional analysis of the YvrGHb two-component system of Bacillus subtilis: identification of the regulated genes by DNA microarray and northern blot analyses.   Biosci. Biotechnol. Biochem.   2005 -11   69(11)   2155-69   16306698    
Prokaryotes B. subtilis   MBS270, MBS271, MBS294   33551   Satomura T, Shimura D, Asai K, Sadaie Y, Hirooka K, Fujita Y.   Enhancement of glutamine utilization in Bacillus subtilis through the GlnK-GlnL two-component regulatory system.   J. Bacteriol.   2005 -7   187(14)   4813-21   15995196   10.1128/JB.187.14.4813-4821.2005  
Prokaryotes B. subtilis   MBS54, MBS55   33550   Serizawa M, Sekiguchi J.   The Bacillus subtilis YdfHI two-component system regulates the transcription of ydfJ, a member of the RND superfamily.   Microbiology (Reading, Engl.)   2005 -6   151(Pt 6)   1769-78   15941986   10.1099/mic.0.27619-0  
Prokaryotes B. subtilis   MBS263, MBS267, MBS269, MBS272, MBS273, MBS275...   33549   Tojo S, Satomura T, Morisaki K, Deutscher J, Hirooka K, Fujita Y.   Elaborate transcription regulation of the Bacillus subtilis ilv-leu operon involved in the biosynthesis of branched-chain amino acids through global regulators of CcpA, CodY and TnrA.   Mol. Microbiol.   2005 -6   56(6)   1560-73   15916606   10.1111/j.1365-2958.2005.04635.x  
Prokaryotes B. subtilis   MBS260, MBS264, MBS265, MBS266, MBS268, MBS274   33547   Tojo S, Satomura T, Morisaki K, Yoshida K, Hirooka K, Fujita Y.   Negative transcriptional regulation of the ilv-leu operon for biosynthesis of branched-chain amino acids through the Bacillus subtilis global regulator TnrA.   J. Bacteriol.   2004 -12   186(23)   7971-9   15547269   10.1128/JB.186.23.7971-7979.2004  
Prokaryotes B. subtilis   MBS56, MBS57, MBS58   33548   Fukushima T, Tanabe T, Yamamoto H, Hosoya S, Sato T, Yoshikawa H, Sekiguchi J.   Characterization of a polysaccharide deacetylase gene homologue (pdaB) on sporulation of Bacillus subtilis.   J. Biochem.   2004 -9   136(3)   283-91   15598884   10.1093/jb/mvh151  
Prokaryotes E. coli, Prokaryotes B. subtilis   ME9665, MBS281, MBS282, MBS283   30181   Yoshida K, Ohki YH, Murata M, Kinehara M, Matsuoka H, Satomura T, Ohki R, Kumano M, Yamane K, Fujita Y.   Bacillus subtilis LmrA is a repressor of the lmrAB and yxaGH operons: identification of its binding site and functional analysis of lmrB and yxaGH.   J. Bacteriol.   2004 -9   186(17)   5640-8   15317768   10.1128/JB.186.17.5640-5648.2004  
Prokaryotes B. subtilis   MBS419   33546   Murayama R, Akanuma G, Makino Y, Nanamiya H, Kawamura F.   Spontaneous transformation and its use for genetic mapping in Bacillus subtilis.   Biosci. Biotechnol. Biochem.   2004 -8   68(8)   1672-80   15322350   10.1271/bbb.68.1672  
Prokaryotes B. subtilis   MBS61   33544   Serizawa M, Yamamoto H, Yamaguchi H, Fujita Y, Kobayashi K, Ogasawara N, Sekiguchi J.   Systematic analysis of SigD-regulated genes in Bacillus subtilis by DNA microarray and Northern blotting analyses.   Gene   2004 -3 -31   329   125-36   15033535   10.1016/j.gene.2003.12.024  
Prokaryotes E. coli, Prokaryotes B. subtilis   ME9644, ME9661, ME9662, ME9663, MBS168, MBS250...   30180   Yoshida K, Yamaguchi M, Ikeda H, Omae K, Tsurusaki K, Fujita Y.   The fifth gene of the iol operon of Bacillus subtilis, iolE, encodes 2-keto-myo-inositol dehydratase.   Microbiology (Reading, Engl.)   2004 -3   150(Pt 3)   571-80   14993306   10.1099/mic.0.26768-0  
Prokaryotes B. subtilis   MBS59, MBS60   33552   Yamaguchi H, Furuhata K, Fukushima T, Yamamoto H, Sekiguchi J.   Characterization of a new Bacillus subtilis peptidoglycan hydrolase gene, yvcE (named cwlO), and the enzymatic properties of its encoded protein.   J. Biosci. Bioeng.   2004   98(3)   174-81   16233686   10.1016/S1389-1723(04)00262-2  
Prokaryotes E. coli, Prokaryotes B. subtilis   ME9643, MBS178, MBS179, MBS207, MBS208, MBS209...   30179   Tojo S, Matsunaga M, Matsumoto T, Kang CM, Yamaguchi H, Asai K, Sadaie Y, Yoshida K, Fujita Y.   Organization and expression of the Bacillus subtilis sigY operon.   J. Biochem.   2003 -12   134(6)   935-46   14769884    
Prokaryotes B. subtilis   MBS220, MBS221   33541   Yoshida K, Yamaguchi H, Kinehara M, Ohki YH, Nakaura Y, Fujita Y.   Identification of additional TnrA-regulated genes of Bacillus subtilis associated with a TnrA box.   Mol. Microbiol.   2003 -7   49(1)   157-65   12823818    
Prokaryotes B. subtilis   MGNA-A001, MGNA-A002, MGNA-A003, MGNA-A004,...   33709   Kobayashi K, Ehrlich SD, Albertini A, Amati G, Andersen KK, Arnaud M, Asai K, Ashikaga S, Aymerich S, Bessieres P, Boland F, Brignell SC, Bron S, Bunai K, Chapuis J, Christiansen LC, Danchin A, Débarbouille M, Dervyn E, Deuerling E, Devine K, Devine SK, Dreesen O, Errington J, Fillinger S, Foster SJ, Fujita Y, Galizzi A, Gardan R, Eschevins C, Fukushima T, Haga K, Harwood CR, Hecker M, Hosoya D, Hullo MF, Kakeshita H, Karamata D, Kasahara Y, Kawamura F, Koga K, Koski P, Kuwana R, Imamura D, Ishimaru M, Ishikawa S, Ishio I, Le Coq D, Masson A, Mauël C, Meima R, Mellado RP, Moir A, Moriya S, Nagakawa E, Nanamiya H, Nakai S, Nygaard P, Ogura M, Ohanan T, O'Reilly M, O'Rourke M, Pragai Z, Pooley HM, Rapoport G, Rawlins JP, Rivas LA, Rivolta C, Sadaie A, Sadaie Y, Sarvas M, Sato T, Saxild HH, Scanlan E, Schumann W, Seegers JF, Sekiguchi J, Sekowska A, Séror SJ, Simon M, Stragier P, Studer R, Takamatsu H, Tanaka T, Takeuchi M, Thomaides HB, Vagner V, van Dijl JM, Watabe K, Wipat A, Yamamoto H, Yamamoto M, Yamamoto Y, Yamane K, Yata K, Yoshida K, Yoshikawa H, Zuber U, Ogasawara N.   Essential Bacillus subtilis genes.   Proc. Natl. Acad. Sci. U.S.A.   2003 -4 -15   100(8)   4678-83   12682299   10.1073/pnas.0730515100  
Prokaryotes B. subtilis   MBS224   33540   Asai K, Yamaguchi H, Kang CM, Yoshida K, Fujita Y, Sadaie Y.   DNA microarray analysis of Bacillus subtilis sigma factors of extracytoplasmic function family.   FEMS Microbiol. Lett.   2003 -3 -14   220(1)   155-60   12644242    
Prokaryotes B. subtilis   MBS239, MBS218, MBS219, MBS230, MBS231, MBS232...   33539   Molle V, Nakaura Y, Shivers RP, Yamaguchi H, Losick R, Fujita Y, Sonenshein AL.   Additional targets of the Bacillus subtilis global regulator CodY identified by chromatin immunoprecipitation and genome-wide transcript analysis.   J. Bacteriol.   2003 -3   185(6)   1911-22   12618455    
Prokaryotes B. subtilis   MBS213, MBS214, MBS215, MBS216, MBS217   33538   Yoshida K, Yamamoto Y, Omae K, Yamamoto M, Fujita Y.   Identification of two myo-inositol transporter genes of Bacillus subtilis.   J. Bacteriol.   2002 -2   184(4)   983-91   11807058    
Prokaryotes E. coli, Prokaryotes B. subtilis   ME9647, MBS243, MBS244, MBS245   33537   Miwa Y, Fujita Y.   Involvement of two distinct catabolite-responsive elements in catabolite repression of the Bacillus subtilis myo-inositol (iol) operon.   J. Bacteriol.   2001 -10   183(20)   5877-84   11566986   10.1128/JB.183.20.5877-5884.2001  
Prokaryotes B. subtilis   MBS62, MBS63   33536   Yamamoto H, Serizawa M, Thompson J, Sekiguchi J.   Regulation of the glv operon in Bacillus subtilis: YfiA (GlvR) is a positive regulator of the operon that is repressed through CcpA and cre.   J. Bacteriol.   2001 -9   183(17)   5110-21   11489864    
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