RRC ID 53821
著者 Ofori PA, Mizuno A, Suzuki M, Martinoia E, Reuscher S, Aoki K, Shibata D, Otagaki S, Matsumoto S, Shiratake K.
タイトル Genome-wide analysis of ATP binding cassette (ABC) transporters in tomato.
ジャーナル PLoS One
Abstract ATP binding cassette (ABC) transporters are proteins that actively mediate the transport of a wide range of molecules, such as organic acids, metal ions, phytohormones and secondary metabolites. Therefore, ABC transporters must play indispensable roles in growth and development of tomato, including fruit development. Most ABC transporters have transmembrane domains (TMDs) and belong to the ABC protein family, which includes not only ABC transporters but also soluble ABC proteins lacking TMDs. In this study, we performed a genome-wide identification and expression analysis of genes encoding ABC proteins in tomato (Solanum lycopersicum), which is a valuable horticultural crop and a model plant for studying fleshy fruits. In the tomato genome, a total of 154 genes putatively encoding ABC transporters, including 9 ABCAs, 29 ABCBs, 26 ABCCs, 2 ABCDs, 2 ABCEs, 6 ABCFs, 70 ABCGs and 10 ABCIs, were identified. Gene expression data from the eFP Browser and reverse transcription-semi-quantitative PCR analysis revealed their tissue-specific and development-specific expression profiles. This work suggests physiological roles of ABC transporters in tomato and provides fundamental information for future studies of ABC transporters not only in tomato but also in other Solanaceae species.
巻・号 13(7)
ページ e0200854
公開日 2018-7-26
DOI 10.1371/journal.pone.0200854
PII PONE-D-18-14709
PMID 30048467
PMC PMC6062036
MeSH ATP-Binding Cassette Transporters / genetics ATP-Binding Cassette Transporters / metabolism* Gene Expression Profiling Gene Expression Regulation, Plant / genetics Gene Expression Regulation, Plant / physiology Genome, Plant / genetics Genome-Wide Association Study / methods Plant Proteins / genetics Plant Proteins / metabolism* Solanum lycopersicum / genetics Solanum lycopersicum / metabolism*
IF 2.74
引用数 21
リソース情報
トマト TOMJPF00001 cDNA clones TOMATOMICS情報利用