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Species Resource name RRC ID Author Title Journal Published Volume Pages Pubmed ID DOI
Algae   NIES-2541,NIES-254,NIES-1419,NIES-2582   47413   Kunugi M, Satoh S, Ihara K, Shibata K, Yamagishi Y, Kogame K, Obokata J, Takabayashi A, Tanaka A.   Evolution of Green Plants Accompanied Changes in Light-Harvesting Systems.   Plant Cell Physiol.   2016 -6   57(6)   1231-43   27057002   10.1093/pcp/pcw071  
Morning Glory   pYAS101   35943   Azuma M, Mitsuda N, Goto K, Oshima Y, Ohme-Takagi M, Otagaki S, Matsumoto S, Shiratake K.   The petal-specific InMYB1 promoter functions by recognizing petaloid cells.   Plant Cell Physiol.   2016 -2 -8       26858281   10.1093/pcp/pcw017  
Rice, Information   Oryzabase   36322   Ohyanagi H, Ebata T, Huang X, Gong H, Fujita M, Mochizuki T, Toyoda A, Fujiyama A, Kaminuma E, Nakamura Y, Feng Q, Wang ZX, Han B, Kurata N.   OryzaGenome: Genome Diversity Database of Wild Oryza Species.   Plant Cell Physiol.   2016 -1   57(1)   e1   26578696   10.1093/pcp/pcv171  
Rice   Oryzabase   36807   Ohyanagi H, Obayashi T, Yano K.   Editorial: Plant and Cell Physiology's 2016 Online Database Issue.   Plant Cell Physiol.   2016 -1   57(1)   1-3   26801748   10.1093/pcp/pcv205  
Tomato   TOMJPF00001(Micro-Tom)   35711   Shikata M, Hoshikawa K, Ariizumi T, Fukuda N, Yamazaki Y, Ezura H.   TOMATOMA Update: Phenotypic and Metabolite Information in the Micro-Tom Mutant Resource.   Plant Cell Physiol.   2015 -12 -30       26719120   10.1093/pcp/pcv194  
Barley   Barley seed samples   36133   Cuesta-Marcos A, Muñoz-Amatriaín M, Filichkin T, Karsai I, Trevaskis B, Yasuda S, Hayes P, Sato K.   The Relationships between Development and Low Temperature Tolerance in Barley Near Isogenic Lines Differing for Flowering Behavior.   Plant Cell Physiol.   2015 -12   56(12)   2312-24   26443377   10.1093/pcp/pcv147  
Algae   NIES-2212   37128   Toyoshima M, Sato N.   High-Level Accumulation of Triacylglycerol and Starch in Photoautotrophically Grown Chlamydomonas debaryana NIES-2212.   Plant Cell Physiol.   2015 -12   56(12)   2447-56   26542110   10.1093/pcp/pcv163  
Lotus / Glycine   L. japonicus MG-20 Miyakojima   36723   Nagata M, Yamamoto N, Shigeyama T, Terasawa Y, Anai T, Sakai T, Inada S, Arima S, Hashiguchi M, Akashi R, Nakayama H, Ueno D, Hirsch AM, Suzuki A.   Red/Far Red Light Controls Arbuscular Mycorrhizal Colonization via Jasmonic Acid and Strigolactone Signaling.   Plant Cell Physiol.   2015 -11   56(11)   2100-9   26412782   10.1093/pcp/pcv135  
Tomato   S. lycopersicum cv. Micro-Tom   36204   Nagata M, Yamamoto N, Shigeyama T, Terasawa Y, Anai T, Sakai T, Inada S, Arima S, Hashiguchi M, Akashi R, Nakayama H, Ueno D, Hirsch AM, Suzuki A.   Red/Far Red Light Controls Arbuscular Mycorrhizal Colonization via Jasmonic Acid and Strigolactone Signaling.   Plant Cell Physiol.   2015 -11   56(11)   2100-9   26412782   10.1093/pcp/pcv135  
Lotus / Glycine   L. japonicus Gifu B-129   35771   Handa Y, Nishide H, Takeda N, Suzuki Y, Kawaguchi M, Saito K.   RNA-seq Transcriptional Profiling of an Arbuscular Mycorrhiza Provides Insights into Regulated and Coordinated Gene Expression in Lotus japonicus and Rhizophagus irregularis.   Plant Cell Physiol.   2015 -8   56(8)   1490-511   26009592   10.1093/pcp/pcv071  
Tomato   TOMJPF00001(Micro-Tom)   33523   Takayama M, Koike S, Kusano M, Matsukura C, Saito K, Ariizumi T, Ezura H.   Tomato Glutamate Decarboxylase Genes SlGAD2 and SlGAD3 Play Key Roles in Regulating γ-Aminobutyric Acid Levels in Tomato (Solanum lycopersicum).   Plant Cell Physiol.   2015 -8   56(8)   1533-45   26009591   10.1093/pcp/pcv075  
Arabidopsis / Cultured plant cells, genes   rpc00008   33343   Suzuki Y, Arae T, Green PJ, Yamaguchi J, Chiba Y.   AtCCR4a and AtCCR4b are Involved in Determining the Poly(A) Length of Granule-bound starch synthase 1 Transcript and Modulating Sucrose and Starch Metabolism in Arabidopsis thaliana.   Plant Cell Physiol.   2015 -5   56(5)   863-74   25630334   10.1093/pcp/pcv012  
Arabidopsis / Cultured plant cells, genes   pda00396 pda00727 pda01468 pda01727 pda01764...   37012   Endo H, Yamaguchi M, Tamura T, Nakano Y, Nishikubo N, Yoneda A, Kato K, Kubo M, Kajita S, Katayama Y, Ohtani M, Demura T.   Multiple classes of transcription factors regulate the expression of VASCULAR-RELATED NAC-DOMAIN7, a master switch of xylem vessel differentiation.   Plant Cell Physiol.   2015 -2   56(2)   242-54   25265867   10.1093/pcp/pcu134  
Lotus / Glycine   BaiHuaLuDaDou, LuHuangDou, Kangwon, Kyonggi, Chungb...   36712   Nakano M, Yamada T, Masuda Y, Sato Y, Kobayashi H, Ueda H, Morita R, Nishimura M, Kitamura K, Kusaba M.   A green-cotyledon/stay-green mutant exemplifies the ancient whole-genome duplications in soybean.   Plant Cell Physiol.   2014 -10   55(10)   1763-71   25108243   10.1093/pcp/pcu107  
Tomato     30958   Reuscher S, Akiyama M, Yasuda T, Makino H, Aoki K, Shibata D, Shiratake K.   The sugar transporter inventory of tomato: genome-wide identification and expression analysis.   Plant Cell Physiol.   2014 -6   55(6)   1123-41   24833026   10.1093/pcp/pcu052  
Lotus / Glycine   L. japonicus Gifu B-129 and Miyakojima MG-20   31002   Kojima T, Saito K, Oba H, Yoshida Y, Terasawa J, Umehara Y, Suganuma N, Kawaguchi M, Ohtomo R.   Isolation and phenotypic characterization of Lotus japonicus mutants specifically defective in arbuscular mycorrhizal formation.   Plant Cell Physiol.   2014 -5   55(5)   928-41   24492255   10.1093/pcp/pcu024  
Tomato   TOMJPF00001(Micro-Tom)   28463   Kobayashi M, Nagasaki H, Garcia V, Just D, Bres C, Mauxion JP, Le Paslier MC, Brunel D, Suda K, Minakuchi Y, Toyoda A, Fujiyama A, Toyoshima H, Suzuki T, Igarashi K, Rothan C, Kaminuma E, Nakamura Y, Yano K, Aoki K.   Genome-wide analysis of intraspecific DNA polymorphism in 'Micro-Tom', a model cultivar of tomato (Solanum lycopersicum).   Plant Cell Physiol.   2014 -2   55(2)   445-54   24319074   10.1093/pcp/pct181  
Tomato     32241   Fukami-Kobayashi K, Nakamura Y, Tamura T, Kobayashi M.   SABRE2: a database connecting plant EST/full-length cDNA clones with Arabidopsis information.   Plant Cell Physiol.   2014 -1   55(1)   e5   24323624   10.1093/pcp/pct177  
Arabidopsis / Cultured plant cells, genes   pda01666,pda04758,pda04986,pda05237,pda07420...   30773   Tanaka K, Hayashi K, Natsume M, Kamiya Y, Sakakibara H, Kawaide H, Kasahara H.   UGT74D1 catalyzes the glucosylation of 2-oxindole-3-acetic acid in the auxin metabolic pathway in Arabidopsis.   Plant Cell Physiol.   2014 -1   55(1)   218-28   24285754   10.1093/pcp/pct173  
Tomato   TOMJPF00013-04   27872   Kimbara J, Yoshida M, Ito H, Kitagawa M, Takada W, Hayashi K, Shibutani Y, Kusano M, Okazaki Y, Nakabayashi R, Mori T, Saito K, Ariizumi T, Ezura H.   Inhibition of CUTIN DEFICIENT 2 Causes Defects in Cuticle Function and Structure and Metabolite Changes in Tomato Fruit.   Plant Cell Physiol.   2013 -9   54(9)   1535-48   23912028   10.1093/pcp/pct100  
Rice, Information   Oryzabase   25689   Ishiwata A, Ozawa M, Nagasaki H, Kato M, Noda Y, Yamaguchi T, Nosaka M, Shimizu-Sato S, Nagasaki A, Maekawa M, Hirano HY, Sato Y.   Two WUSCHEL-related homeobox genes, narrow leaf2 and narrow leaf3, control leaf width in rice.   Plant Cell Physiol.   2013 -5   54(5)   779-92   23420902   10.1093/pcp/pct032  
Tomato   TOMJPF00001   27314   Koike S, Matsukura C, Takayama M, Asamizu E, Ezura H.   Suppression of γ-aminobutyric acid (GABA) transaminases induces prominent GABA accumulation, dwarfism and infertility in the tomato (Solanum lycopersicum L.).   Plant Cell Physiol.   2013 -5   54(5)   793-807   23435575   10.1093/pcp/pct035  
Arabidopsis / Cultured plant cells, genes   pst00020   28140   Kim W, Lee Y, Park J, Lee N, Choi G.   HONSU, a protein phosphatase 2C, regulates seed dormancy by inhibiting ABA signaling in Arabidopsis.   Plant Cell Physiol.   2013 -4   54(4)   555-72   23378449   10.1093/pcp/pct017  
Arabidopsis / Cultured plant cells, genes   pst11030,pst17947   30736   Kong Y, Zhu Y, Gao C, She W, Lin W, Chen Y, Han N, Bian H, Zhu M, Wang J.   Tissue-specific expression of SMALL AUXIN UP RNA41 differentially regulates cell expansion and root meristem patterning in Arabidopsis.   Plant Cell Physiol.   2013 -4   54(4)   609-21   23396598   10.1093/pcp/pct028  
Arabidopsis / Cultured plant cells, genes   rpc00008   30734   Matsuura H, Takenami S, Kubo Y, Ueda K, Ueda A, Yamaguchi M, Hirata K, Demura T, Kanaya S, Kato K.   A computational and experimental approach reveals that the 5'-proximal region of the 5'-UTR has a Cis-regulatory signature responsible for heat stress-regulated mRNA translation in Arabidopsis.   Plant Cell Physiol.   2013 -4   54(4)   474-83   23314753   10.1093/pcp/pcs189  
Lotus / Glycine   pGWB3 plasmid   30991   Takahara M, Magori S, Soyano T, Okamoto S, Yoshida C, Yano K, Sato S, Tabata S, Yamaguchi K, Shigenobu S, Takeda N, Suzaki T, Kawaguchi M.   Too much love, a novel Kelch repeat-containing F-box protein, functions in the long-distance regulation of the legume-Rhizobium symbiosis.   Plant Cell Physiol.   2013 -4   54(4)   433-47   23390201   10.1093/pcp/pct022  
Lotus / Glycine   L. japonicus seeds (Miyakojima MG-20 ) and pUB-GWS-...   30990   Takanashi K, Yokosho K, Saeki K, Sugiyama A, Sato S, Tabata S, Ma JF, Yazaki K.   LjMATE1: a citrate transporter responsible for iron supply to the nodule infection zone of Lotus japonicus.   Plant Cell Physiol.   2013 -4   54(4)   585-94   23385147   10.1093/pcp/pct019  
Arabidopsis / Cultured plant cells, genes   rpc00008   28133   Chiba Y, Mineta K, Hirai MY, Suzuki Y, Kanaya S, Takahashi H, Onouchi H, Yamaguchi J, Naito S.   Changes in mRNA stability associated with cold stress in Arabidopsis cells.   Plant Cell Physiol.   2013 -2   54(2)   180-94   23220693   10.1093/pcp/pcs164  
Information   Oryzabase   25687   Cooper L, Walls RL, Elser J, Gandolfo MA, Stevenson DW, Smith B, Preece J, Athreya B, Mungall CJ, Rensing S, Hiss M, Lang D, Reski R, Berardini TZ, Li D, Huala E, Schaeffer M, Menda N, Arnaud E, Shrestha R, Yamazaki Y, Jaiswal P.   The plant ontology as a tool for comparative plant anatomy and genomic analyses.   Plant Cell Physiol.   2013 -2   54(2)   e1   23220694   10.1093/pcp/pcs163  
Rice, Information   Oryzabase   25688   Sakai H, Lee SS, Tanaka T, Numa H, Kim J, Kawahara Y, Wakimoto H, Yang CC, Iwamoto M, Abe T, Yamada Y, Muto A, Inokuchi H, Ikemura T, Matsumoto T, Sasaki T, Itoh T.   Rice Annotation Project Database (RAP-DB): an integrative and interactive database for rice genomics.   Plant Cell Physiol.   2013 -2   54(2)   e6   23299411   10.1093/pcp/pcs183  
Arabidopsis / Cultured plant cells, genes   sja16500   28119   Shinya T, Motoyama N, Ikeda A, Wada M, Kamiya K, Hayafune M, Kaku H, Shibuya N.   Functional characterization of CEBiP and CERK1 homologs in arabidopsis and rice reveals the presence of different chitin receptor systems in plants.   Plant Cell Physiol.   2012 -10   53(10)   1696-706   22891159   10.1093/pcp/pcs113  
Arabidopsis / Cultured plant cells, genes   pss00001~pss00009,pss00101~pss00103,pss00...   28113   Matsuda O, Tanaka A, Fujita T, Iba K.   Hyperspectral imaging techniques for rapid identification of Arabidopsis mutants with altered leaf pigment status.   Plant Cell Physiol.   2012 -6   53(6)   1154-70   22470059   10.1093/pcp/pcs043  
Algae   NIES-837   27290   Tsuji Y, Suzuki I, Shiraiwa Y.   Enzymological evidence for the function of a plastid-located pyruvate carboxylase in the Haptophyte alga Emiliania huxleyi: a novel pathway for the production of C4 compounds.   Plant Cell Physiol.   2012 -6   53(6)   1043-52   22492231   10.1093/pcp/pcs045  
Arabidopsis / Cultured plant cells, genes   rpc00008,rpc00001   28110   Ogawa Y, Sakurai N, Oikawa A, Kai K, Morishita Y, Mori K, Moriya K, Fujii F, Aoki K, Suzuki H, Ohta D, Saito K, Shibata D.   High-throughput cryopreservation of plant cell cultures for functional genomics.   Plant Cell Physiol.   2012 -5   53(5)   943-52   22437846   10.1093/pcp/pcs038  
Arabidopsis / Cultured plant cells, genes   psh17202   21135   Gao Y, Badejo AA, Sawa Y, Ishikawa T.   Analysis of two L-Galactono-1,4-lactone-responsive genes with complementary expression during the development of Arabidopsis thaliana.   Plant Cell Physiol.   2012 -3   53(3)   592-601   22323769   10.1093/pcp/pcs014  
Arabidopsis / Cultured plant cells, genes   rpc00008   21150   Li B, Takahashi D, Kawamura Y, Uemura M.   Comparison of plasma membrane proteomic changes of Arabidopsis suspension-cultured cells (T87 Line) after cold and ABA treatment in association with freezing tolerance development.   Plant Cell Physiol.   2012 -3   53(3)   543-54   22318864   10.1093/pcp/pcs010  
Arabidopsis / Cultured plant cells, genes   psh12413   21129   Verbitskiy D, Merwe JA, Zehrmann A, Härtel B, Takenaka M.   The E-class PPR protein MEF3 of Arabidopsis thaliana can also function in mitochondrial RNA editing with an additional DYW domain.   Plant Cell Physiol.   2012 -2   53(2)   358-67   22186180   10.1093/pcp/pcr182  
Tomato   TOMJPF00001   15529   Okabe Y, Asamizu E, Saito T, Matsukura C, Ariizumi T, Brès C, Rothan C, Mizoguchi T, Ezura H.   Tomato TILLING technology: development of a reverse genetics tool for the efficient isolation of mutants from Micro-Tom mutant libraries.   Plant Cell Physiol.   2011 -11   52(11)   1994-2005   21965606   10.1093/pcp/pcr134  
Arabidopsis / Cultured plant cells, genes   rpc00008   15320   Kobayashi M, Kouzu N, Inami A, Toyooka K, Konishi Y, Matsuoka K, Matoh T.   Characterization of Arabidopsis CTP:3-deoxy-D-manno-2-octulosonate cytidylyltransferase (CMP-KDO synthetase), the enzyme that activates KDO during rhamnogalacturonan II biosynthesis.   Plant Cell Physiol.   2011 -10   52(10)   1832-43   21893514   10.1093/pcp/pcr120  
Arabidopsis / Cultured plant cells, genes   pst11610   15318   Yoshimura K, Mori T, Yokoyama K, Koike Y, Tanabe N, Sato N, Takahashi H, Maruta T, Shigeoka S.   Identification of alternative splicing events regulated by an Arabidopsis serine/arginine-like protein, atSR45a, in response to high-light stress using a tiling array.   Plant Cell Physiol.   2011 -10   52(10)   1786-805   21862516   10.1093/pcp/pcr115  
Algae   NIES-67,NIES-68   27852   Abe J, Hori S, Tsuchikane Y, Kitao N, Kato M, Sekimoto H.   Stable nuclear transformation of the Closterium peracerosum-strigosum-littorale complex.   Plant Cell Physiol.   2011 -9   52(9)   1676-85   21804095   10.1093/pcp/pcr103  
Algae   NIES-837   27850   Araie H, Sakamoto K, Suzuki I, Shiraiwa Y.   Characterization of the selenite uptake mechanism in the coccolithophore Emiliania huxleyi (Haptophyta).   Plant Cell Physiol.   2011 -7   52(7)   1204-10   21632656   10.1093/pcp/pcr070  
Information   Oryzabase   12486   Nagamine A, Matsusaka H, Ushijima T, Kawagoe Y, Ogawa M, Okita TW, Kumamaru T.   A role for the cysteine-rich 10 kDa prolamin in protein body I formation in rice.   Plant Cell Physiol.   2011 -6   52(6)   1003-16   21521743   10.1093/pcp/pcr053  
Rice   Induced Mutation Lines   12610   Nagamine A, Matsusaka H, Ushijima T, Kawagoe Y, Ogawa M, Okita TW, Kumamaru T.   A role for the cysteine-rich 10 kDa prolamin in protein body I formation in rice.   Plant Cell Physiol.   2011 -6   52(6)   1003-16   21521743   10.1093/pcp/pcr053  
Barley   NA   12009   Saisho D, Ishii M, Hori K, Sato K.   Natural variation of barley vernalization requirements: implication of quantitative variation of winter growth habit as an adaptive trait in East Asia.   Plant Cell Physiol.   2011 -5   52(5)   775-84   21482579   10.1093/pcp/pcr046  
Barley   NA   12006   Zheng L, Fujii M, Yamaji N, Sasaki A, Yamane M, Sakurai I, Sato K, Ma JF.   Isolation and characterization of a barley yellow stripe-like gene, HvYSL5.   Plant Cell Physiol.   2011 -5   52(5)   765-74   21266459   10.1093/pcp/pcr009  
Arabidopsis / Cultured plant cells, genes   pda01711   15315   Bahaji A, Ovecka M, Bárány I, Risueño MC, Muñoz FJ, Baroja-Fernández E, Montero M, Li J, Hidalgo M, Sesma MT, Ezquer I, Testillano PS, Pozueta-Romero J.   Dual targeting to mitochondria and plastids of AtBT1 and ZmBT1, two members of the mitochondrial carrier family.   Plant Cell Physiol.   2011 -4   52(4)   597-609   21330298   10.1093/pcp/pcr019  
Morning Glory   EST clones   11901   Higuchi Y, Sage-Ono K, Sasaki R, Ohtsuki N, Hoshino A, Iida S, Kamada H, Ono M.   Constitutive expression of the GIGANTEA ortholog affects circadian rhythms and suppresses one-shot induction of flowering in Pharbitis nil, a typical short-day plant.   Plant Cell Physiol.   2011 -4   52(4)   638-50   21382978   10.1093/pcp/pcr023  
Lotus / Glycine   miyakojima MG-20   11881   Murakami E, Nagata M, Shimoda Y, Kucho K, Higashi S, Abe M, Hashimoto M, Uchiumi T.   Nitric oxide production induced in roots of Lotus japonicus by lipopolysaccharide from Mesorhizobium loti.   Plant Cell Physiol.   2011 -4   52(4)   610-7   21330297   10.1093/pcp/pcr020  
Arabidopsis / Cultured plant cells, genes   pda01661   12329   Hirabayashi Y, Kikuchi S, Oishi M, Nakai M.   In vivo studies on the roles of two closely related Arabidopsis Tic20 proteins, AtTic20-I and AtTic20-IV.   Plant Cell Physiol.   2011 -3   52(3)   469-78   21266460   10.1093/pcp/pcr010  
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