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Species Resource name Author Title Journal Year published Volume Pages Pubmed ID
General Microbes  JCM 1157  Okuda K, Yanagihara S, Sugayama T, Zendo T, Nakayama J, Sonomoto K.  Functional significance of the E loop, a novel motif conserved in the lantibiotic immunity ATP-binding cassette transport systems.  J Bacteriol.  2010  192(11)  2801-8  20382768  
General Microbes  JCM 10545  Zhang Z, Akutsu J, Kawarabayasi Y.  Identification of novel acetyltransferase activity on the thermostable protein ST0452 from Sulfolobus tokodaii strain 7.  J Bacteriol.  2010  192(13)  3287-93  20400541  
E.coli  ME7986(MG16...  Bekker M, de Vries S, Ter Beek A, Hellingwerf KJ, de Mattos MJ.  Respiration of Escherichia coli can be fully uncoupled via the nonelectrogenic terminal cytochrome bd-II oxidase.  J Bacteriol.  2009  191(17)  5510-7  19542282  
General Microbes  JCM11548  Cozen AE, Weirauch MT, Pollard KS, Bernick DL, Stuart JM, Lowe TM.  Transcriptional map of respiratory versatility in the hyperthermophilic crenarchaeon Pyrobaculum aerophilum.  J Bacteriol.  2009  191(3)  782-94  19047344  
General Microbes  JCM1046, JC...  Fang F, Li Y, Bumann M, Raftis EJ, Casey PG, Cooney JC, Walsh MA, O'Toole PW.  Allelic variation of bile salt hydrolase genes in Lactobacillus salivarius does not determine bile resistance levels.  J Bacteriol.  2009  191(18)  5743-57  19592587  
Lotus / Glycine  Lotus japon...  Hanyu M, Fujimoto H, Tejima K, Saeki K.  Functional differences of two distinct catalases in Mesorhizobium loti MAFF303099 under free-living and symbiotic conditions.  J Bacteriol.  2009  191(5)  1463-71  19074374  
General Microbes  JCM2892  Iida T, Waki T, Nakamura K, Mukouzaka Y, Kudo T.  The GAF-like-domain-containing transcriptional regulator DfdR is a sensor protein for dibenzofuran and several hydrophobic aromatic compounds.  J Bacteriol.  2009  191(1)  123-34  18952799  
E.coli  ME9062(BW25...  Isak G, Rydén-Aulin M.  Hypomodification of the wobble base in tRNAGlu, tRNALys, and tRNAGln suppresses the temperature-sensitive phenotype caused by mutant release factor 1.  J Bacteriol.  2009  191(5)  1604-9  19103926  
E.coli  ME9062(BW25...  Janakiraman A, Fixen KR, Gray AN, Niki H, Goldberg MB.  A genome-scale proteomic screen identifies a role for DnaK in chaperoning of polar autotransporters in Shigella.  J Bacteriol.  2009  191(20)  6300-11  19684128  
E.coli  ME8998(B178...  Kumar CM, Khare G, Srikanth CV, Tyagi AK, Sardesai AA, Mande SC.  Facilitated oligomerization of mycobacterial GroEL: evidence for phosphorylation-mediated oligomerization.  J Bacteriol.  2009  191(21)  6525-38  19717599  
E.coli  Keio JW2514  Liu IF, Annamalai T, Sutherland JH, Tse-Dinh YC.  Hydroxyl radicals are involved in cell killing by the bacterial topoisomerase I cleavage complex.  J Bacteriol.  2009  191(16)  5315-9  19525344  
E.coli  ME7986(MG16...  Meyer R  The r1162 mob proteins can promote conjugative transfer from cryptic origins in the bacterial chromosome.  J Bacteriol.  2009  191(5)  1574-80  19074386  
E.coli  pBAD24  Oku Y, Kurokawa K, Matsuo M, Yamada S, Lee BL, Sekimizu K.  Pleiotropic roles of polyglycerolphosphate synthase of lipoteichoic acid in growth of Staphylococcus aureus cells.  J Bacteriol.  2009  191(1)  141-51  18952789  
E.coli  Keio  Rosner JL, Martin RG.  An excretory function for the Escherichia coli outer membrane pore TolC: upregulation of marA and soxS transcription and Rob activity due to metabolites accumulated in tolC mutants.  J Bacteriol.  2009  191(16)  5283-92  19502391  
Information  E. coli  Salem AM, Nakano T, Takuwa M, Matoba N, Tsuboi T, Terato H, Yamamoto K, Yamada M, Nohmi T, Ide H.  Genetic analysis of repair and damage tolerance mechanisms for DNA-protein cross-links in Escherichia coli.  J Bacteriol.  2009  191(18)  5657-68  19617358  
E.coli  ME8083, AQ1...  Salem AM, Nakano T, Takuwa M, Matoba N, Tsuboi T, Terato H, Yamamoto K, Yamada M, Nohmi T, Ide H.  Genetic analysis of repair and damage tolerance mechanisms for DNA-protein cross-links in Escherichia coli.  J Bacteriol.  2009  191(18)  5657-68  19617358  
E.coli  ME9062(BW25...  Sinha S, Cameron AD, Redfield RJ.  Sxy induces a CRP-S regulon in Escherichia coli.  J Bacteriol.  2009  191(16)  5180-95  19502395  
General Microbes  JCM14575  Antunes A, Rainey FA, Wanner G, Taborda M, Pätzold J, Nobre MF, da Costa MS, Huber R.  A new lineage of halophilic, wall-less, contractile bacteria from a brine-filled deep of the Red Sea.  J Bacteriol.  2008  190(10)  3580-7  18326567  
E.coli  ME9018, JW3...  Fujimitsu K, Su'etsugu M, Yamaguchi Y, Mazda K, Fu N, Kawakami H, Katayama T.  Modes of overinitiation, dnaA gene expression, and inhibition of cell division in a novel cold-sensitive hda mutant of Escherichia coli.  J Bacteriol.  2008  190(15)  5368-81  18502852  
Information  PEC  Inoue A, Murata Y, Takahashi H, Tsuji N, Fujisaki S, Kato J.  Involvement of an essential gene, mviN, in murein synthesis in Escherichia coli.  J Bacteriol.  2008  190(21)  7298-301  18708495  
General Microbes  JCM10545  Li Z, Lu S, Hou G, Ma X, Sheng D, Ni J, Shen Y.  Hjm/Hel308A DNA helicase from Sulfolobus tokodaii promotes replication fork regression and interacts with Hjc endonuclease in vitro.  J Bacteriol.  2008  190(8)  3006-17  18296528  
E.coli  ME9062(BW25...  Nanchen A, Schicker A, Revelles O, Sauer U.  Cyclic AMP-dependent catabolite repression is the dominant control mechanism of metabolic fluxes under glucose limitation in Escherichia coli.  J Bacteriol.  2008  190(7)  2323-30  18223071  
General Microbes  JCM9189  Ohnishi M, Saito M, Wakabayashi S, Ishizuka M, Nishimura K, Nagata Y, Kasai S.  Purification and characterization of serine racemase from a hyperthermophilic archaeon, Pyrobaculum islandicum.  J Bacteriol.  2008  190(4)  1359-65  17965169  
E.coli  JW3414, ME9...  Ohshima N, Yamashita S, Takahashi N, Kuroishi C, Shiro Y, Takio K.  Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (UgpQ) requires Mg2+, Co2+, or Mn2+ for its enzyme activity.  J Bacteriol.  2008  190(4)  1219-23  18083802  
General Microbes  JCM1157, JC...  Okuda K, Aso Y, Nakayama J, Sonomoto K.  Cooperative transport between NukFEG and NukH in immunity against the lantibiotic nukacin ISK-1 produced by Staphylococcus warneri ISK-1.  J Bacteriol.  2008  190(1)  356-62  17951378  
E.coli  ME7986(MG16...  Rankin LD, Bodenmiller DM, Partridge JD, Nishino SF, Spain JC, Spiro S.  Escherichia coli NsrR regulates a pathway for the oxidation of 3-nitrotyramine to 4-hydroxy-3-nitrophenylacetate.  J Bacteriol.  2008  190(18)  6170-7  18658270  
E.coli  JW5543  Broadbent SE, Balbontin R, Casadesus J, Marinus MG, van der Woude M.  YhdJ, a nonessential CcrM-like DNA methyltransferase of Escherichia coli and Salmonella enterica.  J Bacteriol.  2007  189(11)  4325-7  17400740  
General Microbes  JCM7686  Dziewit L, Jazurek M, Drewniak L, Baj J, Bartosik D.  The SXT conjugative element and linear prophage N15 encode toxin-antitoxin-stabilizing systems homologous to the tad-ata module of the Paracoccus aminophilus plasmid pAMI2.  J Bacteriol.  2007  189(5)  1983-97  17158670  
E.coli  JW2415, JW2...  Fuentes DE, Fuentes EL, Castro ME, Pérez JM, Araya MA, Chasteen TG, Pichuantes SE, Vásquez CC.  Cysteine metabolism-related genes and bacterial resistance to potassium tellurite.  J Bacteriol.  2007  189(24)  8953-60  17951385  
E.coli  ME9062 (BW2...  Fuhrer T, Chen L, Sauer U, Vitkup D.  Computational prediction and experimental verification of the gene encoding the NAD+/NADP+-dependent succinate semialdehyde dehydrogenase in Escherichia coli.  J Bacteriol.  2007  189(22)  8073-8  17873044  
Pathogenic Microbe    Ikeda R, Saito F, Matsuo M, Kurokawa K, Sekimizu K, Yamaguchi M, Kawamoto S.  Contribution of the mannan backbone of cryptococcal glucuronoxylomannan and a glycolytic enzyme of Staphylococcus aureus to contact-mediated killing of Cryptococcus neoformans.  J Bacteriol.  2007  189(13)  4815-26  17483230  
General Microbes  JCM1465  Inaoka T, Ochi K.  Glucose uptake pathway-specific regulation of synthesis of neotrehalosadiamine, a novel autoinducer produced in Bacillus subtilis.  J Bacteriol.  2007  189(1)  65-75  17056753  
E.coli    Inoue T, Shingaki R, Hirose S, Waki K, Mori H, Fukui K.  Genome-wide screening of genes required for swarming motility in Escherichia coli K-12.  J Bacteriol.  2007  189(3)  950-7  17122336  
Information  E.coli  Iwaki H, Muraki T, Ishihara S, Hasegawa Y, Rankin KN, Sulea T, Boyd J, Lau PC.  Characterization of a pseudomonad 2-nitrobenzoate nitroreductase and its catabolic pathway-associated 2-hydroxylaminobenzoate mutase and a chemoreceptor involved in 2-nitrobenzoate chemotaxis.  J Bacteriol.  2007  189(9)  3502-14  17277060  
E.coli  pK18mobsacB...  Iwaki H, Muraki T, Ishihara S, Hasegawa Y, Rankin KN, Sulea T, Boyd J, Lau PC.  Characterization of a pseudomonad 2-nitrobenzoate nitroreductase and its catabolic pathway-associated 2-hydroxylaminobenzoate mutase and a chemoreceptor involved in 2-nitrobenzoate chemotaxis.  J Bacteriol.  2007  189(9)  3502-14  17277060  
E.coli  ME9062(BW25...  Jain S, Goldberg MB.  Requirement for YaeT in the outer membrane assembly of autotransporter proteins.  J Bacteriol.  2007  189(14)  5393-8  17513479  
E.coli  ME9062(BW25...  Kern R, Malki A, Abdallah J, Tagourti J, Richarme G.  Escherichia coli HdeB is an acid stress chaperone.  J Bacteriol.  2007  189(2)  603-10  17085547  
General Microbes  JCM8981  Morii H, Eguchi T, Koga Y.  In vitro biosynthesis of ether-type glycolipids in the methanoarchaeon Methanothermobacter thermautotrophicus.  J Bacteriol.  2007  189(11)  4053-61  17416653  
E.coli  ? W3110  Ogawa T, Murakami K, Mori H, Ishii N, Tomita M, Yoshin M.  Role of phosphoenolpyruvate in the NADP-isocitrate dehydrogenase and isocitrate lyase reaction in Escherichia coli.  J Bacteriol.  2007  189(3)  1176-8  17142397  
Lotus / Glycine  Gifu　B-129  Okazaki S, Hattori Y, Saeki K.  The Mesorhizobium loti purB gene is involved in infection thread formation and nodule development in Lotus japonicus.  J Bacteriol.  2007  189(22)  8347-52  17827288  
E.coli  pMA2  Reddy M  Role of FtsEX in cell division of Escherichia coli: viability of ftsEX mutants is dependent on functional SufI or high osmotic strength.  J Bacteriol.  2007  189(1)  98-108  17071757  
E.coli  JW0893, JW2...  Weiss B  The deoxycytidine pathway for thymidylate synthesis in Escherichia coli.  J Bacteriol.  2007  189(21)  7922-6  17827303  
E.coli    Weiss B  YjjG, a dUMP phosphatase, is critical for thymine utilization by Escherichia coli K-12.  J Bacteriol.  2007  189(5)  2186-9  17189366  
E.coli  ME9062(BW25...  Zhang XS, García-Contreras R, Wood TK.  YcfR (BhsA) influences Escherichia coli biofilm formation through stress response and surface hydrophobicity.  J Bacteriol.  2007  189(8)  3051-62  17293424  
E.coli  ?CV-25(DH5a...  Itoi Y, Horinaka M, Tsujimoto Y, Matsui H, Watanabe K.  Characteristic features in the structure and collagen-binding ability of a thermophilic collagenolytic protease from the thermophile Geobacillus collagenovorans MO-1.  J Bacteriol.  2006  188(18)  6572-9  16952949  
E.coli    Kahramanoglou C, Webster CL, El-Robh MS, Belyaeva TA, Busby SJ.  Mutational analysis of the Escherichia coli melR gene suggests a two-state concerted model to explain transcriptional activation and repression in the melibiose operon.  J Bacteriol.  2006  188(9)  3199-207  16621812  
Pathogenic Microbe    Kurdi P, Kawanishi K, Mizutani K, Yokota A.  Mechanism of growth inhibition by free bile acids in lactobacilli and bifidobacteria.  J Bacteriol.  2006  188(5)  1979-86  16484210  
E.coli  JE10651, JE...  Gaur R, Varshney U.  Genetic analysis identifies a function for the queC (ybaX) gene product at an initial step in the queuosine biosynthetic pathway in Escherichia coli.  J Bacteriol.  2005  187(20)  6893-901  16199558  
E.coli  pUC19  Kosono S, Haga K, Tomizawa R, Kajiyama Y, Hatano K, Takeda S, Wakai Y, Hino M, Kudo T.  Characterization of a multigene-encoded sodium/hydrogen antiporter (sha) from Pseudomonas aeruginosa: its involvement in pathogenesis.  J Bacteriol.  2005  187(15)  5242-8  16030218  
Pathogenic Microbe    Okada K., Iida T., Kita-Tsukamoto K.,Honda T.  Vibrio commonly possess two chromosome.  J Bacteriol.  2005  187  752-757  15629946  
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