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Species Resource name Author Title Journal Year published Volume Pages Pubmed ID
Arabidopsis  pda05150,pd...  Arent S, Christensen CE, Pye VE, Nørgaard A, Henriksen A.  The multifunctional protein in peroxisomal beta-oxidation: structure and substrate specificity of the arabidopsis thaliana protein MFP2.  J Biol Chem.  2010  285(31)  24066-77  20463021  
Silkworm    Ito K, Katsuma S, Yamamoto K, Kadono-Okuda K, Mita K, Shimada T.  Yellow-e determines the color pattern of larval head and tail spots of the silkworm Bombyx mori.  J Biol Chem.  2010  285(8)  5624-9  19996320  
Mouse  STOCK Tg(Na...  Jincho Y, Araki R, Hoki Y, Tamura C, Nakamura M, Ando S, Kasama Y, Abe M.  Generation of Genome Integration-free Induced Pluripotent Stem Cells from Fibroblasts of C57BL/6 Mice without c-Myc Transduction.  J Biol Chem.  2010  285(34)  26384-9  20554535  
Zebrafish    Kotani T, Iemura S, Natsume T, Kawakami K, Yamashita M.  Mys protein regulates protein kinase A activity by interacting with regulatory type Ialpha subunit during vertebrate development.  J Biol Chem.  2010  285(7)  5106-16  20018846  
General Microbes  JCM 2013  Maita N, Nyirenda J, Igura M, Kamishikiryo J, Kohda D.  Comparative structural biology of eubacterial and archaeal oligosaccharyltransferases.  J Biol Chem.  2010  285(7)  4941-50  20007322  
Arabidopsis  pda03502  Pye VE, Christensen CE, Dyer JH, Arent S, Henriksen A.  Peroxisomal plant 3-ketoacyl-CoA thiolase structure and activity are regulated by a sensitive redox switch.  J Biol Chem.  2010  285(31)  24078-88  20463027  
Silkworm    Sakudoh T, Iizuka T, Narukawa J, Sezutsu H, Kobayashi I, Kuwazaki S, Banno Y, Kitamura A, Sugiyama H, Takada N, Fujimoto H, Kadono-Okuda K, Mita K, Tamura T, Yamamoto K, Tsuchida K.  A CD36-related transmembrane protein is coordinated with an intracellular lipid-binding protein in selective carotenoid transport for cocoon coloration.  J Biol Chem.  2010  285(10)  7739-51  20053988  
Mouse  C57BL-p53+/...  Tobisawa Y, Imai Y, Fukuda M, Kawashima H.  Sulfation of colonic mucins by N-acetylglucosamine 6-O-sulfotransferase-2 and its protective function in experimental colitis in mice.  J Biol Chem.  2010  285(9)  6750-60  20018871  
Arabidopsis  rpc00001  Yamada K, Osakabe Y, Mizoi J, Nakashima K, Fujita Y, Shinozaki K, Yamaguchi-Shinozaki K.  Functional analysis of an Arabidopsis thaliana abiotic stress-inducible facilitated diffusion transporter for monosaccharides.  J Biol Chem.  2010  285(2)  1138-46  19901034  
Arabidopsis  pda01369,pd...  Yamazaki T, Takata N, Uemura M, Kawamura Y.  Arabidopsis synaptotagmin SYT1, a type I signal-anchor protein, requires tandem C2 domains for delivery to the plasma membrane.  J Biol Chem.  2010  285(30)  23165-76  20498364  
E.coli  ME9062(BW25...  Arnold T, Zeth K, Linke D.  Structure and function of colicin S4, a colicin with a duplicated receptor-binding domain.  J Biol Chem.  2009  284(10)  6403-13  19056731  
C.elegans  tm1477  Ideo H, Fukushima K, Gengyo-Ando K, Mitani S, Dejima K, Nomura K, Yamashita K.  A Caenorhabditis elegans glycolipid-binding galectin functions in host defense against bacterial infection.  J Biol Chem.  2009  284(39)  26493-501  19635802  
Arabidopsis  pda   Kissen R, Bones AM.  Nitrile-specifier proteins involved in glucosinolate hydrolysis in Arabidopsis thaliana.  J Biol Chem.  2009  284(18)  12057-70  19224919  
DNA  pBMSA-PB2  Kuzuhara T, Kise D, Yoshida H, Horita T, Murazaki Y, Nishimura A, Echigo N, Utsunomiya H, Tsuge H.  Structural basis of the influenza A virus RNA polymerase PB2 RNA-binding domain containing the pathogenicity-determinant lysine 627 residue.  J Biol Chem.  2009  284(11)  6855-60  19144639  
Mouse    Martino ME, Olsen JC, Fulcher NB, Wolfgang MC, O'Neal WK, Ribeiro CM.  Airway epithelial inflammation-induced endoplasmic reticulum Ca2+ store expansion is mediated by X-box binding protein-1.  J Biol Chem.  2009  284(22)  14904-13  19321437  
Information  silkworm  Meng Y, Katsuma S, Daimon T, Banno Y, Uchino K, Sezutsu H, Tamura T, Mita K, Shimada T.  The silkworm mutant lemon (lemon lethal) is a potential insect model for human sepiapterin reductase deficiency.  J Biol Chem.  2009  ()    19246455  
Silkworm  カイコ  Meng Y, Katsuma S, Daimon T, Banno Y, Uchino K, Sezutsu H, Tamura T, Mita K, Shimada T.  The silkworm mutant lemon (lemon lethal) is a potential insect model for human sepiapterin reductase deficiency.  J Biol Chem.  2009  284(17)  11698-705  19246455  
General Microbes  JCM8981  Morii H, Kiyonari S, Ishino Y, Koga Y.  A novel biosynthetic pathway of archaetidyl-myo-inositol via archaetidyl-myo-inositol phosphate from CDP-archaeol and D-glucose 6-phosphate in methanoarchaeon Methanothermobacter thermautotrophicus cells.  J Biol Chem.  2009  284(45)  30766-74  19740749  
E.coli  ME9062(BW25...  Pimkin M, Pimkina J, Markham GD.  A regulatory role of the Bateman domain of IMP dehydrogenase in adenylate nucleotide biosynthesis.  J Biol Chem.  2009  284(12)  7960-9  19153081  
C.intestinalis    Sasaki N, Ogasawara M, Sekiguchi T, Kusumoto S, Satake H.  Toll-like receptors of the ascidian Ciona intestinalis: prototypes with hybrid functionalities of vertebrate Toll-like receptors.  J Biol Chem.  2009  284(40)  27336-43  19651780  
C.elegans  tm1898, tm1779  Sämann J, Hegermann J, Gromoff EV, Eimer S, Baumeister R, Schmidt E.  Caenorhabditis elegans LRK-1 and PINK-1 act antagonistically in stress response and neurite outgrowth.  J Biol Chem.  2009  284(24)  16482-91  19251702  
C.elegans  tm1794  Thein MC, Winter AD, Stepek G, McCormack G, Stapleton G, Johnstone IL, Page AP.  Combined extracellular matrix cross-linking activity of the peroxidase MLT-7 and the dual oxidase BLI-3 is critical for post-embryonic viability in Caenorhabditis elegans.  J Biol Chem.  2009  284(26)  17549-63  19406744  
Arabidopsis  pda  Wang YQ, Feechan A, Yun BW, Shafiei R, Hofmann A, Taylor P, Xue P, Yang FQ, Xie ZS, Pallas JA, Chu CC, Loake GJ.  S-nitrosylation of AtSABP3 antagonizes the expression of plant immunity.  J Biol Chem.  2009  284(4)  2131-7  19017644  
C.intestinalis    Yamada L, Saito T, Taniguchi H, Sawada H, Harada Y.  Comprehensive egg-coat proteome of an ascidian Ciona intestinalis reveals gamete recognition molecules involved in self-sterility.  J Biol Chem.  2009  284  9402-9410  19193647  
DNA  pcDNA3 FLAG...  Yamasaki T, Takahashi A, Pan J, Yamaguchi N, Yokoyama KK.  Phosphorylation of Activation Transcription Factor-2 at Serine 121 by Protein Kinase C Controls c-Jun-mediated Activation of Transcription.  J Biol Chem.  2009  284(13)  8567-81  19176525  
Silkworm  カイコ  Daimon T, Taguchi T, Meng Y, Katsuma S, Mita K, Shimada T.  Beta-fructofuranosidase genes of the silkworm, Bombyx mori: insights into enzymatic adaptation of B. mori to toxic alkaloids in mulberry latex.  J Biol Chem.  2008  283(22)  15271-9  18397891  
Information  E. coli str...  Doan N, Gettins PG.  alpha-Macroglobulins are present in some gram-negative bacteria: characterization of the alpha2-macroglobulin from Escherichia coli.  J Biol Chem.  2008  283(42)  28747-56  18697741  
E.coli  ME7986(MG16...  Doan N, Gettins PG.  alpha-Macroglobulins are present in some gram-negative bacteria: characterization of the alpha2-macroglobulin from Escherichia coli.  J Biol Chem.  2008  283(42)  28747-56  18697741  
Arabidopsis  pda  Garcia-Dominguez M, March-Diaz R, Reyes JC.  The PHD domain of plant PIAS proteins mediates sumoylation of bromodomain GTE proteins.  J Biol Chem.  2008  283(31)  21469-77  18502747  
C.elegans  tm1996  Janssen T, Husson SJ, Lindemans M, Mertens I, Rademakers S, Ver Donck K, Geysen J, Jansen G, Schoofs L.  Functional characterization of three G protein-coupled receptors for pigment dispersing factors in Caenorhabditis elegans.  J Biol Chem.  2008  283(22)  15241-9  18390545  
E.coli  JW(K)1270, ...  Kawashima Y, Miyazaki E, Müller M, Tokuda H, Nishiyama K.  Diacylglycerol specifically blocks spontaneous integration of membrane proteins and allows detection of a factor-assisted integration.  J Biol Chem.  2008  283(36)  24489-96  18614537  
E.coli  JD22571, JD...  Kurihara S, Oda S, Tsuboi Y, Kim HG, Oshida M, Kumagai H, Suzuki H.  gamma-Glutamylputrescine synthetase in the putrescine utilization pathway of Escherichia coli K-12.  J Biol Chem.  2008  283(29)  19981-90  18495664  
C.elegans  tm1944  Lee H, Cho JS, Lambacher N, Lee J, Lee SJ, Lee TH, Gartner A, Koo HS.  The Caenorhabditis elegans AMP-activated protein kinase AAK-2 is phosphorylated by LKB1 and is required for resistance to oxidative stress and for normal motility and foraging behavior.  J Biol Chem.  2008  283(22)  14988-93  18408008  
Arabidopsis  pda  Lezhneva L, Kuras R, Ephritikhine G, de Vitry C.  A novel pathway of cytochrome c biogenesis is involved in the assembly of the cytochrome b6f complex in arabidopsis chloroplasts.  J Biol Chem.  2008  283(36)  24608-16  18593701  
Mouse  TgN(GOFGFP)...  Mizuno N, Kosaka M.  Novel variants of Oct-3/4 gene expressed in mouse somatic cells.  J Biol Chem.  2008  283(45)  30997-1004  18765667  
Arabidopsis  pda  Moreno I, Norambuena L, Maturana D, Toro M, Vergara C, Orellana A, Zurita-Silva A, Ordenes VR.  AtHMA1 is a thapsigargin-sensitive Ca2+/heavy metal pump.  J Biol Chem.  2008  283(15)  9633-41  18252706  
Animal cells    Mukai H, Hokari Y, Seki T, Takao T, Kubota M, Matsuo Y, Tsukagoshi H, Kato M, Kimura H, Shimonishi Y, Kiso Y, Nishi Y, Wakamatsu K, Munekata E.  Discovery of mitocryptide-1, a neutrophil-activating cryptide from healthy porcine heart.  J Biol Chem.  2008  283(45)  30596-605  18768476  
DNA  Mouse E-cad...  Nagaoka M, Hagiwara Y, Takemura K, Murakami Y, Li J, Duncan SA, Akaike T.  Design of the artificial acellular feeder layer for the efficient propagation of mouse embryonic stem cells.  J Biol Chem.  2008  283(39)  26468-76  18614540  
DNA  p3AP1 (PMA)...  Ogawa E, Okuyama R, Egawa T, Nagoshi H, Obinata M, Tagami H, Ikawa S, Aiba S.  p63/p51-induced onset of keratinocyte differentiation via the c-Jun N-terminal kinase pathway is counteracted by keratinocyte growth factor.  J Biol Chem.  2008  283(49)  34241-9  18849344  
Arabidopsis  pda  Pavón LR, Lundh F, Lundin B, Mishra A, Persson BL, Spetea C.  Arabidopsis ANTR1 is a thylakoid Na+-dependent phosphate transporter: functional characterization in Escherichia coli.  J Biol Chem.  2008  283(20)  13520-7  18353780  
C.elegans  tm2350, tm1992...  Gutternigg M, Kretschmer-Lubich D, Paschinger K, Rendić D, Hader J, Geier P, Ranftl R, Jantsch V, Lochnit G, Wilson IB.  Biosynthesis of truncated N-linked oligosaccharides results from non-orthologous hexosaminidase-mediated mechanisms in nematodes, plants, and insects.  J Biol Chem.  2007  282(38)  27825-40  17636254  
Information  E.coli  Hunter WN  The non-mevalonate pathway of isoprenoid precursor biosynthesis.  J Biol Chem.  2007  282(30)  21573-7  17442674  
Arabidopsis  pda  Ikegami A, Yoshimura N, Motohashi K, Takahashi S, Romano PG, Hisabori T, Takamiya K, Masuda T.  The CHLI1 subunit of Arabidopsis thaliana magnesium chelatase is a target protein of the chloroplast thioredoxin.  J Biol Chem.  2007  282(27)  19282-91  17472958  
Information  C.elegans  Kato T, Kitamura K, Maeda M, Kimura Y, Katayama T, Ashida H, Yamamoto K.  Free oligosaccharides in the cytosol of Caenorhabditis elegans are generated through endoplasmic reticulum-golgi trafficking.  J Biol Chem.  2007  282(30)  22080-8  17537729  
C.elegans  tm1208, tm1078  Kato T, Kitamura K, Maeda M, Kimura Y, Katayama T, Ashida H, Yamamoto K.  Free oligosaccharides in the cytosol of Caenorhabditis elegans are generated through endoplasmic reticulum-golgi trafficking.  J Biol Chem.  2007  282(30)  22080-8  17537729  
C.elegans  tm516, tm710  Kitagawa H, Izumikawa T, Mizuguchi S, Dejima K, Nomura KH, Egusa N, Taniguchi F, Tamura J, Gengyo-Ando K, Mitani S, Nomura K, Sugahara K.  Expression of rib-1, a Caenorhabditis elegans homolog of the human tumor suppressor EXT genes, is indispensable for heparan sulfate synthesis and embryonic morphogenesis.  J Biol Chem.  2007  282(11)  8533-44  17237233  
E.coli  ? JW3430, C...  Lesnyak DV, Osipiuk J, Skarina T, Sergiev PV, Bogdanov AA, Edwards A, Savchenko A, Joachimiak A, Dontsova OA.  Methyltransferase that modifies guanine 966 of the 16 S rRNA: functional identification and tertiary structure.  J Biol Chem.  2007  282(8)  5880-7  17189261  
C.elegans  tm1919  Mah AK, Armstrong KR, Chew DS, Chu JS, Tu DK, Johnsen RC, Chen N, Chamberlin HM, Baillie DL.  Transcriptional regulation of AQP-8, a Caenorhabditis elegans aquaporin exclusively expressed in the excretory system, by the POU homeobox transcription factor CEH-6.  J Biol Chem.  2007  282(38)  28074-86  17660295  
C.elegans  tm1316, tm1641  Mano I, Straud S, Driscoll M.  Caenorhabditis elegans glutamate transporters influence synaptic function and behavior at sites distant from the synapse.  J Biol Chem.  2007  282(47)  34412-9  17681948  
Mouse    Mariño G, Salvador-Montoliu N, Fueyo A, Knecht E, Mizushima N, López-Otín C.  Tissue-specific autophagy alterations and increased tumorigenesis in mice deficient in Atg4C/autophagin-3.  J Biol Chem.  2007  282(25)  18573-83  17442669  
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