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Species Resource name Author Title Journal Year published Volume Pages Pubmed ID
Arabidopsis  pst00621  Garcia C, Khan NZ, Nannmark U, Aronsson H.  The chloroplast protein CPSAR1, dually localized in the stroma and the inner envelope membrane, is involved in thylakoid biogenesis.  Plant J.  2010  63(1)  73-85  20408996  
Arabidopsis  rpc00008  Kitamura S, Matsuda F, Tohge T, Yonekura-Sakakibara K, Yamazaki M, Saito K, Narumi I.  Metabolic profiling and cytological analysis of proanthocyanidins in immature seeds of Arabidopsis thaliana flavonoid accumulation mutants.  Plant J.  2010  62(4)  549-59  20180920  
Arabidopsis  pda11926  Lu Q, Tang X, Tian G, Wang F, Liu K, Nguyen V, Kohalmi SE, Keller WA, Tsang EW, Harada JJ, Rothstein SJ, Cui Y.  Arabidopsis homolog of the yeast TREX-2 mRNA export complex: components and anchoring nucleoporin.  Plant J.  2010  61(2)  259-70  19843313  
Arabidopsis  pda04241,pd...  Pracharoenwattana I, Zhou W, Keech O, Francisco PB, Udomchalothorn T, Tschoep H, Stitt M, Gibon Y, Smith SM.  Arabidopsis has a cytosolic fumarase required for the massive allocation of photosynthate into fumaric acid and for rapid plant growth on high nitrogen.  Plant J.  2010  62(5)  785-95  20202172  
Arabidopsis  pda05127 ...  Samaha H, Delorme V, Pontvianne F, Cooke R, Delalande F, Van Dorsselaer A, Echeverria M, Sáez-Vásquez J.  Identification of protein factors and U3 snoRNAs from a Brassica oleracea RNP complex involved in the processing of pre-rRNA.  Plant J.  2010  61(3)  383-98  19891704  
Barley  EST Clones  Chiba Y, Mitani N, Yamaji N, Ma JF.  HvLsi1 is a silicon influx transporter in barley.  Plant J.  2009  57(5)  810-8  18980663  
Arabidopsis  pda05367 ...  Goubet F, Barton CJ, Mortimer JC, Yu X, Zhang Z, Miles GP, Richens J, Liepman AH, Seffen K, Dupree P.  Cell wall glucomannan in Arabidopsis is synthesised by CSLA glycosyltransferases, and influences the progression of embryogenesis.  Plant J.  2009  60(3)  527-38  19619156  
Arabidopsis  pda02760 ...  Guillaumot D, Guillon S, Déplanque T, Vanhee C, Gumy C, Masquelier D, Morsomme P, Batoko H.  The Arabidopsis TSPO-related protein is a stress and abscisic acid-regulated, endoplasmic reticulum-Golgi-localized membrane protein.  Plant J.  2009  60(2)  242-56  19548979  
Arabidopsis  pda   Masuda S, Ikeda R, Masuda T, Hashimoto H, Tsuchiya T, Kojima H, Nomata J, Fujita Y, Mimuro M, Ohta H, Takamiya K.  Prolamellar bodies formed by cyanobacterial protochlorophyllide oxidoreductase in Arabidopsis.  Plant J.  2009  58(6)  952-60  19222806  
Arabidopsis  rpd00105  Matsuda O, Sakamoto H, Nakao Y, Oda K, Iba K.  CTD phosphatases in the attenuation of wound-induced transcription of jasmonic acid biosynthetic genes in Arabidopsis.  Plant J.  2009  57(1)  96-108  18764923  
Arabidopsis  pdp21351  Okada R, Kondo S, Satbhai SB, Yamaguchi N, Tsukuda M, Aoki S.  Functional characterization of CCA1/LHY homolog genes, PpCCA1a and PpCCA1b, in the moss Physcomitrella patens.  Plant J.  2009  60(3)  551-63  19624471  
Arabidopsis  pda08325  Saul H, Elharrar E, Gaash R, Eliaz D, Valenci M, Akua T, Avramov M, Frankel N, Berezin I, Gottlieb D, Elazar M, David-Assael O, Tcherkas V, Mizrachi K, Shaul O.  The upstream open reading frame of the Arabidopsis AtMHX gene has a strong impact on transcript accumulation through the nonsense-mediated mRNA decay pathway.  Plant J.  2009  60(6)  1031-42  19754518  
Wheat    Shimada S, Ogawa T, Kitagawa S, Suzuki T, Ikari C, Shitsukawa N, Abe T, Kawahigashi H, Kikuchi R, Handa H, Murai K.  A genetic network of flowering-time genes in wheat leaves, in which an APETALA1/FRUITFULL-like gene, VRN1, is upstream of FLOWERING LOCUS T.  Plant J.  2009  58(4)  668-81  19175767  
Lotus / Glycine  L: MG20  Shimoda Y, Shimoda-Sasakura F, Kucho K, Kanamori N, Nagata M, Suzuki A, Abe M, Higashi S, Uchiumi T.  Overexpression of class 1 plant hemoglobin genes enhances symbiotic nitrogen fixation activity between Mesorhizobium loti and Lotus japonicus.  Plant J.  2009  57(2)  254-63  18801013  
Arabidopsis  pst  Zheng Z, Qualley A, Fan B, Dudareva N, Chen Z.  An important role of a BAHD acyl transferase-like protein in plant innate immunity.  Plant J.  2009  57(6)  1040-53  19036031  
Arabidopsis  pda  Duan K, Yi K, Dang L, Huang H, Wu W, Wu P.  Characterization of a sub-family of Arabidopsis genes with the SPX domain reveals their diverse functions in plant tolerance to phosphorus starvation.  Plant J.  2008  54(6)  965-975  18315545  
Arabidopsis  pdz   Garcia M, Myouga F, Takechi K, Sato H, Nabeshima K, Nagata N, Takio S, Shinozaki K, Takano H.  An Arabidopsis homolog of the bacterial peptidoglycan synthesis enzyme MurE has an essential role in chloroplast development.  Plant J.  2008  53(6)  924-34  18036201  
Arabidopsis  pst  Gonzalez A, Zhao M, Leavitt JM, Lloyd AM.  Regulation of the anthocyanin biosynthetic pathway by the TTG1/bHLH/Myb transcriptional complex in Arabidopsis seedlings.  Plant J.  2008  53(5)  814-27  18036197  
Arabidopsis  pda  Matsui K, Umemura Y, Ohme-Takagi M.  AtMYBL2, a protein with a single MYB domain, acts as a negative regulator of anthocyanin biosynthesis in Arabidopsis.  Plant J.  2008  55(6)  954-67  18532977  
Arabidopsis  pda  Miao Y, Li KY, Li HY, Yao X, Jiang L.  The vacuolar transport of aleurain-GFP and 2S albumin-GFP fusions is mediated by the same pre-vacuolar compartments in tobacco BY-2 and Arabidopsis suspension cultured cells.  Plant J.  2008  56(5)  824-39  18680561  
Arabidopsis  pda   Molendijk AJ, Ruperti B, Singh MK, Dovzhenko A, Ditengou FA, Milia M, Westphal L, Rosahl S, Soellick TR, Uhrig J, Weingarten L, Huber M, Palme K.  A cysteine-rich receptor-like kinase NCRK and a pathogen-induced protein kinase RBK1 are Rop GTPase interactors.  Plant J.  2008  53(6)  909-23  18088316  
Arabidopsis  pst  Sakai T, Honing H, Nishioka M, Uehara Y, Takahashi M, Fujisawa N, Saji K, Seki M, Shinozaki K, Jones MA, Smirnoff N, Okada K, Wasteneys GO.  Armadillo repeat-containing kinesins and a NIMA-related kinase are required for epidermal-cell morphogenesis in Arabidopsis.  Plant J.  2008  53(1)  157-71  17971038  
Arabidopsis  pdx00423  Vlad F, Turk BE, Peynot P, Leung J, Merlot S.  A versatile strategy to define the phosphorylation preferences of plant protein kinases and screen for putative substrates.  Plant J.  2008  55(1)  104-17  18363786  
Arabidopsis  pda  Xing D, Zhao H, Xu R, Li QQ.  Arabidopsis PCFS4, a homologue of yeast polyadenylation factor Pcf11p, regulates FCA alternative processing and promotes flowering time.  Plant J.  2008  54(5)  899-910  18298670  
Arabidopsis  pst  Xing S, Zachgo S.  ROXY1 and ROXY2, two Arabidopsis glutaredoxin genes, are required for anther development.  Plant J.  2008  53(5)  790-801  18036205  
Arabidopsis  pda  Bueso E, Alejandro S, Carbonell P, Perez-Amador MA, Fayos J, Bellés JM, Rodriguez PL, Serrano R.  The lithium tolerance of the Arabidopsis cat2 mutant reveals a cross-talk between oxidative stress and ethylene.  Plant J.  2007  52(6)  1052-65  17931347  
Morning Glory  アサガオ  Choi JD, Hoshino A, Park KI, Park IS, Iida S.  Spontaneous mutations caused by a Helitron transposon, Hel-It1, in morning glory, Ipomoea tricolor.  Plant J.  2007  49(5)  924-34  17257169  
Arabidopsis  pda  Kovermann P, Meyer S, Hörtensteiner S, Picco C, Scholz-Starke J, Ravera S, Lee Y, Martinoia E.  The Arabidopsis vacuolar malate channel is a member of the ALMT family.  Plant J.  2007  52(6)  1169-80  18005230  
Arabidopsis  rpc00031  Nakashima K, Tran LS, Van Nguyen D, Fujita M, Maruyama K, Todaka D, Ito Y, Hayashi N, Shinozaki K, Yamaguchi-Shinozaki K.  Functional analysis of a NAC-type transcription factor OsNAC6 involved in abiotic and biotic stress-responsive gene expression in rice.  Plant J.  2007  51(4)  617-30  17587305  
Arabidopsis  pst  Ndamukong I, Abdallat AA, Thurow C, Fode B, Zander M, Weigel R, Gatz C.  SA-inducible Arabidopsis glutaredoxin interacts with TGA factors and suppresses JA-responsive PDF1.2 transcription.  Plant J.  2007  50(1)  128-39  17397508  
Arabidopsis  pst  Noiriel A, Naponelli V, Bozzo GG, Gregory JF 3rd, Hanson AD.  Folate salvage in plants: pterin aldehyde reduction is mediated by multiple non-specific aldehyde reductases.  Plant J.  2007  51(3)  378-89  17550420  
Morning Glory  アサガオ  Park KI, Ishikawa N, Morita Y, Choi JD, Hoshino A, Iida S.  A bHLH regulatory gene in the common morning glory, Ipomoea purpurea, controls anthocyanin biosynthesis in flowers, proanthocyanidin and phytomelanin pigmentation in seeds, and seed trichome formation.  Plant J.  2007  49(4)  641-54  17270013  
Arabidopsis  rpc00008  Shinohara H, Matsubayashi Y.  Functional immobilization of plant receptor-like kinase onto microbeads towards receptor array construction and receptor-based ligand fishing.  Plant J.  2007  52(1)  175-84  17662033  
Arabidopsis  pda06685  Tripp J, Inoue K, Keegstra K, Froehlich JE.  A novel serine/proline-rich domain in combination with a transmembrane domain is required for the insertion of AtTic40 into the inner envelope membrane of chloroplasts.  Plant J.  2007  52(5)  824-38  17883373  
Arabidopsis  pda  Tyrrell M, Campanoni P, Sutter JU, Pratelli R, Paneque M, Sokolovski S, Blatt MR.  Selective targeting of plasma membrane and tonoplast traffic by inhibitory (dominant-negative) SNARE fragments.  Plant J.  2007  51(6)  1099-115  17662029  
Arabidopsis  pst  Zhang ZB, Zhu J, Gao JF, Wang C, Li H, Li H, Zhang HQ, Zhang S, Wang DM, Wang QX, Huang H, Xia HJ, Yang ZN.  Transcription factor AtMYB103 is required for anther development by regulating tapetum development, callose dissolution and exine formation in Arabidopsis.  Plant J.  2007  52(3)  528-38  17727613  
Arabidopsis  pst  Hase Y, Trung KH, Matsunaga T, Tanaka A.  A mutation in the uvi4 gene promotes progression of endo-reduplication and confers increased tolerance towards ultraviolet B light.  Plant J.  2006  46(2)  317-26  16623893  
Arabidopsis  rpc00008  Nishizawa A, Yabuta Y, Yoshida E, Maruta T, Yoshimura K, Shigeoka S.  Arabidopsis heat shock transcription factor A2 as a key regulator in response to several types of environmental stress.  Plant J.  2006  48(4)  535-47  17059409  
Arabidopsis  pda  Stefano G, Renna L, Chatre L, Hanton SL, Moreau P, Hawes C, Brandizzi F.  In tobacco leaf epidermal cells, the integrity of protein export from the endoplasmic reticulum and of ER export sites depends on active COPI machinery.  Plant J.  2006  46(1)  95-110  16553898  
Arabidopsis  pda  Subramanian C, Woo J, Cai X, Xu X, Servick S, Johnson CH, Nebenfuhr A, von Arnim AG.  A suite of tools and application notes for in vivo protein interaction assays using bioluminescence resonance energy transfer (BRET).  Plant J.  2006  48(1)  138-52  16925598  
Arabidopsis  pda  Dieterle M, Thomann A, Renou JP, Parmentier Y, Cognat V, Lemonnier G, Muller R, Shen WH, Kretsch T, Genschik P.  Molecular and functional characterization of Arabidopsis Cullin 3A.  Plant J.  2005  41(3)  386-99.  15659098  
Information  Lotus / Glycine  Lene Heegaard Madsen, Eigo Fukai, Simona Radutoiu, Christopher Karl Yost, Niels Sandal, Leif Schauser and Jens Stougaard  LORE1, an active low-copy-number TY3-gypsy retrotransposon family in the model legume Lotus japonicus.  Plant J.  2005  44  372-381  16236148  
Lotus / Glycine  L: Gifu, ec...  Madsen LH, Fukai E, Radutoiu S, Yost CK, Sandal N, Schauser L, Stougaard J.  LORE1, an active low-copy-number TY3-gypsy retrotransposon family in the model legume Lotus japonicus.  Plant J.  2005  44(3)  372-81  16236148  
Arabidopsis  pda  Moreno JI, Martin R, Castresana C.  Arabidopsis SHMT1, a serine hydroxymethyltransferase that functions in the photorespiratory pathway influences resistance to biotic and abiotic stress.  Plant J.  2005  41(3)  451-63.  15659103  
Morning Glory    Morita Y., Hoshino A., Kikuchi Y., Okuhara H., Ono E., Tanaka Y., Fukui Y., Saito N., Nitasaka E., Noguchi H., Iida S.  Japanese morning glory dusky mutants displaying reddish-brown or purplish-gray flowers are deficient in a novel glycosylation enzyme for anthocyanin biosynthesis, UDP-glucose: anthocyanidin 3-O-glucoside-2''-O-glucosyltransferase, due to 4-bp insertions in the gene.  Plant J.  2005  42(3)  353-363  15842621  
Arabidopsis  pda  Nishimura N, Kitahata N, Seki M, Narusaka Y, Narusaka M, Kuromori T, Asami T, Shinozaki K, Hirayama T.  Analysis of ABA Hypersensitive Germination2 revealed the pivotal functions of PARN in stress response in Arabidopsis.  Plant J.  2005  44(6)  972-84.  16359390  
Arabidopsis  pda  Tohge T, Nishiyama Y, Hirai MY, Yano M, Nakajima J, Awazuhara M, Inoue E, Takahashi H, Goodenowe DB, Kitayama M, Noji M, Yamazaki M, Saito K.  Functional genomics by integrated analysis of metabolome and transcriptome of Arabidopsis plants over-expressing an MYB transcription factor.  Plant J.  2005  42(2)  218-35.  15807784  
Arabidopsis  pda  El-Din El-Assal S, Le J, Basu D, Mallery EL, Szymanski DB.  DISTORTED2 encodes an ARPC2 subunit of the putative Arabidopsis ARP2/3 complex.  Plant J.  2004  38(3)  526-38.  15086808  
Rice  Induced Mut...  Gomi, K., Sasaki, A., Itoh, H.,Ueguchi-Tanaka M, Ashikari M, Kitano H, Matsuoka M.  GID2, an F-box subunit of the SCF E3 complex, specifically interacts with phospholylated SLR1 protein and regulates the gibberellin-dependent degradation of SLR1 in rice.  Plant J.  2004  37  626-634  14756772  
Arabidopsis  pda  Maruyama K, Sakuma Y, Kasuga M, Ito Y, Seki M, Goda H, Shimada Y, Yoshida S, Shinozaki K, Yamaguchi-Shinozaki K.  Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems.  Plant J.  2004  38(6)  982-93.  15165189  
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