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Species Resource name Author Title Journal Year published Volume Pages Pubmed ID
Arabidopsis  rpc00008  Alonso AP, Piasecki RJ, Wang Y, LaClair RW, Shachar-Hill Y.  Quantifying the labeling and the levels of plant cell wall precursors using ion chromatography tandem mass spectrometry.  Plant Physiol.  2010  153(3)  915-24  20442274  
Arabidopsis  pst16025  Alvarez C, Calo L, Romero LC, García I, Gotor C.  An O-acetylserine(thiol)lyase homolog with L-cysteine desulfhydrase activity regulates cysteine homeostasis in Arabidopsis.  Plant Physiol.  2010  152(2)  656-69  19955263  
Arabidopsis  pda  Freeman JL, Tamaoki M, Stushnoff C, Quinn CF, Cappa JJ, Devonshire J, Fakra SC, Marcus MA, McGrath SP, Van Hoewyk D, Pilon-Smits EA.  Molecular mechanisms of selenium tolerance and hyperaccumulation in Stanleya pinnata.  Plant Physiol.  2010  153(4)  1630-52  20498337  
Arabidopsis  pda06248,pd...  Haselier A, Akbari H, Weth A, Baumgartner W, Frentzen M.  Two closely related genes of Arabidopsis encode plastidial cytidinediphosphate diacylglycerol synthases essential for photoautotrophic growth.  Plant Physiol.  2010  153(3)  1372-84  20442275  
Arabidopsis  rpc00008  Oka T, Saito F, Shimma Y, Yoko-o T, Nomura Y, Matsuoka K, Jigami Y.  Characterization of endoplasmic reticulum-localized UDP-D-galactose: hydroxyproline O-galactosyltransferase using synthetic peptide substrates in Arabidopsis.  Plant Physiol.  2010  152(1)  332-40  19923238  
Arabidopsis  rpc00008  Yamaguchi M, Goué N, Igarashi H, Ohtani M, Nakano Y, Mortimer JC, Nishikubo N, Kubo M, Katayama Y, Kakegawa K, Dupree P, Demura T.  VASCULAR-RELATED NAC-DOMAIN6 and VASCULAR-RELATED NAC-DOMAIN7 effectively induce transdifferentiation into xylem vessel elements under control of an induction system.  Plant Physiol.  2010  153(3)  906-14  20488898  
Arabidopsis  pda   Barbezier N, Canino G, Rodor J, Jobet E, Saez-Vasquez J, Marchfelder A, Echeverría M.  Processing of a dicistronic tRNA-snoRNA precursor: combined analysis in vitro and in vivo reveals alternate pathways and coupling to assembly of snoRNP.  Plant Physiol.  2009  150(3)  1598-610  19420328  
Arabidopsis  pst   Beaudoin F, Wu X, Li F, Haslam RP, Markham JE, Zheng H, Napier JA, Kunst L.  Functional characterization of the Arabidopsis beta-ketoacyl-coenzyme A reductase candidates of the fatty acid elongase.  Plant Physiol.  2009  150(3)  1174-91  19439572  
Arabidopsis  pda   Budhiraja R, Hermkes R, Müller S, Schmidt J, Colby T, Panigrahi K, Coupland G, Bachmair A.  Substrates related to chromatin and to RNA-dependent processes are modified by Arabidopsis SUMO isoforms that differ in a conserved residue with influence on desumoylation.  Plant Physiol.  2009  149(3)  1529-40  19151129  
Arabidopsis  pda   Canino G, Bocian E, Barbezier N, Echeverría M, Forner J, Binder S, Marchfelder A.  Arabidopsis encodes four tRNase Z enzymes.  Plant Physiol.  2009  150(3)  1494-502  19411372  
Information  Oryzabase  Childs KL  Genomic and genetic database resources for the grasses.  Plant Physiol.  2009  149(1)  132-6  19126704  
Lotus / Glycine  Gifu B-129,...  Maekawa-Yoshikawa M, Müller J, Takeda N, Maekawa T, Sato S, Tabata S, Perry J, Wang TL, Groth M, Brachmann A, Parniske M.  The temperature-sensitive brush mutant of the legume Lotus japonicus reveals a link between root development and nodule infection by rhizobia.  Plant Physiol.  2009  149(4)  1785-96  19176723  
Arabidopsis  pst  Michaelson LV, Zäuner S, Markham JE, Haslam RP, Desikan R, Mugford S, Albrecht S, Warnecke D, Sperling P, Heinz E, Napier JA.  Functional characterization of a higher plant sphingolipid Delta4-desaturase: defining the role of sphingosine and sphingosine-1-phosphate in Arabidopsis.  Plant Physiol.  2009  149(1)  487-98  18978071  
Information  Barley  Mochida K, Yoshida T, Sakurai T, Ogihara Y, Shinozaki K.  TriFLDB: a database of clustered full-length coding sequences from Triticeae with applications to comparative grass genomics.  Plant Physiol.  2009  150(3)  1135-46  19448038  
Wheat  AK330135-AK...  Mochida K, Yoshida T, Sakurai T, Ogihara Y, Shinozaki K.  TriFLDB: a database of clustered full-length coding sequences from Triticeae with applications to comparative grass genomics.  Plant Physiol.  2009  150(3)  1135-46  19448038  
Arabidopsis  pst13552  Panikashvili D, Shi JX, Schreiber L, Aharoni A.  The Arabidopsis DCR encoding a soluble BAHD acyltransferase is required for cutin polyester formation and seed hydration properties.  Plant Physiol.  2009  151(4)  1773-89  19828672  
Information  LegumeBase  Perry J, Brachmann A, Welham T, Binder A, Charpentier M, Groth M, Haage K, Markmann K, Wang TL, Parniske M.  TILLING in Lotus japonicus identified large allelic series for symbiosis genes and revealed a bias in functionally defective ethyl methanesulfonate alleles toward glycine replacements.  Plant Physiol.  2009  151(3)  1281-91  19641028  
Lotus / Glycine  Lotus japon...  Perry J, Brachmann A, Welham T, Binder A, Charpentier M, Groth M, Haage K, Markmann K, Wang TL, Parniske M.  TILLING in Lotus japonicus identified large allelic series for symbiosis genes and revealed a bias in functionally defective EMS alleles towards glycine replacements.  Plant Physiol.  2009  ()    19641028  
Arabidopsis  pda  Rodrigues A, Santiago J, Rubio S, Saez A, Osmont KS, Gadea J, Hardtke CS, Rodriguez PL.  The short-rooted phenotype of the brevis radix mutant partly reflects root abscisic acid hypersensitivity.  Plant Physiol.  2009  149(4)  1917-28  19201913  
Information  Oryzabase  Sachs MM  Cereal germplasm resources.  Plant Physiol.  2009  149(1)  148-51  19126707  
Information  Barley  Schulte D, Close TJ, Graner A, Langridge P, Matsumoto T, Muehlbauer G, Sato K, Schulman AH, Waugh R, Wise RP, Stein N.  The international barley sequencing consortium--at the threshold of efficient access to the barley genome.  Plant Physiol.  2009  149(1)  142-7  19126706  
Barley  cDNA Clones  Schulte D, Close TJ, Graner A, Langridge P, Matsumoto T, Muehlbauer G, Sato K, Schulman AH, Waugh R, Wise RP, Stein N.  The international barley sequencing consortium--at the threshold of efficient access to the barley genome.  Plant Physiol.  2009  149(1)  142-7  19126706  
Morning Glory    Shibuya K, Yamada T, Suzuki T, Shimizu K, Ichimura K.  InPSR26, a putative membrane protein, regulates programmed cell death during petal senescence in Japanese morning glory.  Plant Physiol.  2009  149(2)  816-24  19036837  
Lotus / Glycine  L: MG20  Tominaga A, Nagata M, Futsuki K, Abe H, Uchiumi T, Abe M, Kucho KI, Hashiguchi M, Akashi R, Hirsch AM, Arima S, Suzuki A.  Enhanced nodulation and nitrogen fixation in the ABA low-sensitive mutant enf1 (enhanced nitrogen fixation 1) of Lotus japonicus.  Plant Physiol.  2009  ()    19776164  
Barley  BAC Clones  Wicker T, Krattinger SG, Lagudah ES, Komatsuda T, Pourkheirandish M, Matsumoto T, Cloutier S, Reiser L, Kanamori H, Sato K, Perovic D, Stein N, Keller B.  Analysis of intraspecies diversity in wheat and barley genomes identifies breakpoints of ancient haplotypes and provides insight into the structure of diploid and hexaploid triticeae gene pools.  Plant Physiol.  2009  149(1)  258-70  19011002  
Lotus / Glycine  Gifu B-129 ...  Asamizu E, Shimoda Y, Kouchi H, Tabata S, Sato S.  A positive regulatory role for LjERF1 in the nodulation process is revealed by systematic analysis of nodule-associated transcription factors of Lotus japonicus.  Plant Physiol.  2008  147(4)  2030-40  18567832  
Arabidopsis  pda   Blakeslee JJ, Zhou HW, Heath JT, Skottke KR, Barrios JA, Liu SY, DeLong A.  Specificity of RCN1-mediated protein phosphatase 2A regulation in meristem organization and stress response in roots.  Plant Physiol.  2008  146(2)  539-53  18162590  
Arabidopsis  pst  Muralla R, Chen E, Sweeney C, Gray JA, Dickerman A, Nikolau BJ, Meinke D.  A bifunctional locus (BIO3-BIO1) required for biotin biosynthesis in Arabidopsis.  Plant Physiol.  2008  146(1)  60-73  17993549  
Arabidopsis  pda  Naponelli V, Noiriel A, Ziemak MJ, Beverley SM, Lye LF, Plume AM, Botella JR, Loizeau K, Ravanel S, Rébeillé F, de Crécy-Lagard V, Hanson AD.  Phylogenomic and functional analysis of pterin-4a-carbinolamine dehydratase family (COG2154) proteins in plants and microorganisms.  Plant Physiol.  2008  146(4)  1515-27  18245455  
Arabidopsis  pda  Schuhmann H, Huesgen PF, Gietl C, Adamska I.  The DEG15 serine protease cleaves peroxisomal targeting signal 2-containing proteins in Arabidopsis.  Plant Physiol.  2008  148(4)  1847-56  18952862  
Information  Oryzabase  Shulaev V, Korban SS, Sosinski B, Abbott AG, Aldwinckle HS, Folta KM, Iezzoni A, Main D, Arús P, Dandekar AM, Lewers K, Brown SK, Davis TM, Gardiner SE, Potter D, Veilleux RE.  Multiple models for Rosaceae genomics.  Plant Physiol.  2008  147(3)  985-1003  18487361  
Arabidopsis  pda  Sitaraman J, Bui M, Liu Z.  LEUNIG_HOMOLOG and LEUNIG perform partially redundant functions during Arabidopsis embryo and floral development.  Plant Physiol.  2008  147(2)  672-81  18390806  
Arabidopsis  pda  Tamaoki M, Freeman JL, Pilon-Smits EA.  Cooperative ethylene and jasmonic acid signaling regulates selenite resistance in Arabidopsis.  Plant Physiol.  2008  146(3)  1219-30  18178671  
Arabidopsis  pdp   Wang Y, Secco D, Poirier Y.  Characterization of the PHO1 gene family and the responses to phosphate deficiency of Physcomitrella patens.  Plant Physiol.  2008  146(2)  646-56  18055586  
Algae  NIES-2235  Yamano T, Miura K, Fukuzawa H.  Expression analysis of genes associated with the induction of the carbon-concentrating mechanism in Chlamydomonas reinhardtii.  Plant Physiol.  2008  147(1)  340-54  18322145  
Information  Rice  Ilic K, Kellogg EA, Jaiswal P, Zapata F, Stevens PF, Vincent LP, Avraham S, Reiser L, Pujar A, Sachs MM, Whitman NT, McCouch SR, Schaeffer ML, Ware DH, Stein LD, Rhee SY.  The plant structure ontology, a unified vocabulary of anatomy and morphology of a flowering plant.  Plant Physiol.  2007  143(2)  587-99  17142475  
Information  Rice  Masoudi-Nejad A, Goto S, Jauregui R, Ito M, Kawashima S, Moriya Y, Endo TR, Kanehisa M.  EGENES: transcriptome-based plant database of genes with metabolic pathway information and expressed sequence tag indices in KEGG.  Plant Physiol.  2007  144(2)  857-66  17468225  
Arabidopsis  pst  Muralla R, Sweeney C, Stepansky A, Leustek T, Meinke D.  Genetic dissection of histidine biosynthesis in Arabidopsis.  Plant Physiol.  2007  144(2)  890-903  17434988  
Arabidopsis  pst  Nobuta K, Okrent RA, Stoutemyer M, Rodibaugh N, Kempema L, Wildermuth MC, Innes RW.  The GH3 acyl adenylase family member PBS3 regulates salicylic acid-dependent defense responses in Arabidopsis.  Plant Physiol.  2007  144(2)  1144-56  17468220  
Lotus / Glycine  L. japonicu...  Sato S, Nakamura Y, Asamizu E, Isobe S, Tabata S.  Genome sequencing and genome resources in model legumes.  Plant Physiol.  2007  144(2)  588-93  17556522  
Arabidopsis  sje00600/sj...  Schwarte S, Bauwe H.  Identification of the photorespiratory 2-phosphoglycolate phosphatase, PGLP1, in Arabidopsis.  Plant Physiol.  2007  144(3)  1580-6  17478634  
Lotus / Glycine  Lotus japon...  Udvardi MK, Kakar K, Wandrey M, Montanari O, Murray J, Andriankaja A, Zhang JY, Benedito V, Hofer JM, Chueng F, Town CD.  Legume transcription factors: global regulators of plant development and response to the environment.  Plant Physiol.  2007  144(2)  538-49  17556517  
Arabidopsis  pda  Briggs GC, Mouchel CF, Hardtke CS.  Characterization of the plant-specific BREVIS RADIX gene family reveals limited genetic redundancy despite high sequence conservation.  Plant Physiol.  2006  140(4)  1306-16  16514016  
Arabidopsis  pda  Colby T, Matthäi A, Boeckelmann A, Stuible HP.  SUMO-conjugating and SUMO-deconjugating enzymes from Arabidopsis.  Plant Physiol.  2006  142(1)  318-32  16920872  
Arabidopsis  pda  Katoh A, Uenohara K, Akita M, Hashimoto T.  Early steps in the biosynthesis of NAD in Arabidopsis start with aspartate and occur in the plastid.  Plant Physiol.  2006  141(3)  851-7  16698895  
Information  Rice  Kurata N, Yamazaki Y.  Oryzabase. An integrated biological and genome information database for rice.  Plant Physiol.  2006  140(1)  12-7  16403737  
Rice  Database  Kurata, N.and Yamazaki, Y.  Oryzabase: an integrated biological and genome information database for rice.  Plant Physiol.  2006  140  12-17  16403737  
Information  Tomato  Marin Talbot Brewer, Lixin Lang, Kikuo Fujimura, Nancy Dujmovic, Simon Gray and Esther van der Knaap  Development of a Controlled Vocabulary and Software Application to Analyze Fruit Shape Variation in Tomato and Other Plant Species  Plant Physiol.  2006  141  15-25  16684933  
Arabidopsis  pda  Matsubayashi Y, Ogawa M, Kihara H, Niwa M, Sakagami Y.  Disruption and overexpression of Arabidopsis phytosulfokine receptor gene affects cellular longevity and potential for growth.  Plant Physiol.  2006  142(1)  45-53  16829587  
Arabidopsis  pda  Mo X, Zhu Q, Li X, Li J, Zeng Q, Rong H, Zhang H, Wu P.  The hpa1 mutant of Arabidopsis reveals a crucial role of histidine homeostasis in root meristem maintenance.  Plant Physiol.  2006  141(4)  1425-35  16815950  
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