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Species Resource name Author Title Journal Year published Volume Pages Pubmed ID
Arabidopsis  pda06190,pd...  Alassimone J, Naseer S, Geldner N.  A developmental framework for endodermal differentiation and polarity.  Proc Natl Acad Sci U S A.  2010  107(11)  5214-9  20142472  
Arabidopsis  pda02010  Brutus A, Sicilia F, Macone A, Cervone F, De Lorenzo G.  A domain swap approach reveals a role of the plant wall-associated kinase 1 (WAK1) as a receptor of oligogalacturonides.  Proc Natl Acad Sci U S A.  2010  107(20)  9452-7  20439716  
Silkworm    Daimon T, Hirayama C, Kanai M, Ruike Y, Meng Y, Kosegawa E, Nakamura M, Tsujimoto G, Katsuma S, Shimada T.  The silkworm Green b locus encodes a quercetin 5-O-glucosyltransferase that produces green cocoons with UV-shielding properties.  Proc Natl Acad Sci U S A.  2010  107(25)  11471-6  20534444  
Arabidopsis  pda07543  Fujimoto M, Arimura S, Ueda T, Takanashi H, Hayashi Y, Nakano A, Tsutsumi N.  Arabidopsis dynamin-related proteins DRP2B and DRP1A participate together in clathrin-coated vesicle formation during endocytosis.  Proc Natl Acad Sci U S A.  2010  107(13)  6094-9  20231465  
Mouse  BFM/2Ms  Kasahara T, Abe K, Mekada K, Yoshiki A, Kato T.  Genetic variation of melatonin productivity in laboratory mice under domestication.  Proc Natl Acad Sci U S A.  2010  107(14)  6412-7  20308563  
DNA  MSM Mouse B...  Kasahara T, Abe K, Mekada K, Yoshiki A, Kato T.  Genetic variation of melatonin productivity in laboratory mice under domestication.  Proc Natl Acad Sci U S A.  2010  107(14)  6412-7  20308563  
ES cell  KhES-1  Kuroda Y, Kitada M, Wakao S, Nishikawa K, Tanimura Y, Makinoshima H, Goda M, Akashi H, Inutsuka A, Niwa A, Shigemoto T, Nabeshima Y, Nakahata T, Nabeshima Y, Fujiyoshi Y, Dezawa M.  Unique multipotent cells in adult human mesenchymal cell populations.  Proc Natl Acad Sci U S A.  2010  107(19)  8639-43  20421459  
Arabidopsis  pda04867  Kuromori T, Miyaji T, Yabuuchi H, Shimizu H, Sugimoto E, Kamiya A, Moriyama Y, Shinozaki K.  ABC transporter AtABCG25 is involved in abscisic acid transport and responses.  Proc Natl Acad Sci U S A.  2010  107(5)  2361-6  20133881  
Silkworm    Liu C, Yamamoto K, Cheng TC, Kadono-Okuda K, Narukawa J, Liu SP, Han Y, Futahashi R, Kidokoro K, Noda H, Kobayashi I, Tamura T, Ohnuma A, Banno Y, Dai FY, Xiang ZH, Goldsmith MR, Mita K, Xia QY.  Repression of tyrosine hydroxylase is responsible for the sex-linked chocolate mutation of the silkworm, Bombyx mori.  Proc Natl Acad Sci U S A.  2010  107(29)  12980-5  20615980  
Barley    Nair SK, Wang N, Turuspekov Y, Pourkheirandish M, Sinsuwongwat S, Chen G, Sameri M, Tagiri A, Honda I, Watanabe Y, Kanamori H, Wicker T, Stein N, Nagamura Y, Matsumoto T, Komatsuda T.  Cleistogamous flowering in barley arises from the suppression of microRNA-guided HvAP2 mRNA cleavage.  Proc Natl Acad Sci U S A.  2010  107(1)  490-5  20018663  
Drosophila    Ahmad ST, Sweeney ST, Lee JA, Sweeney NT, Gao FB.  Genetic screen identifies serpin5 as a regulator of the toll pathway and CHMP2B toxicity associated with frontotemporal dementia.  Proc Natl Acad Sci U S A.  2009  106(29)  12168-73  19581577  
C.elegans  tm1580, tm659...  Arur S, Ohmachi M, Nayak S, Hayes M, Miranda A, Hay A, Golden A, Schedl T.  Multiple ERK substrates execute single biological processes in Caenorhabditis elegans germ-line development.  Proc Natl Acad Sci U S A.  2009  106(12)  4776-81  19264959  
C.elegans  tm1860, tm1155...  Han T, Manoharan AP, Harkins TT, Bouffard P, Fitzpatrick C, Chu DS, Thierry-Mieg D, Thierry-Mieg J, Kim JK.  26G endo-siRNAs regulate spermatogenic and zygotic gene expression in Caenorhabditis elegans.  Proc Natl Acad Sci U S A.  2009  106(44)  18674-9  19846761  
Drosophila    Ishimoto H, Sakai T, Kitamoto T.  Ecdysone signaling regulates the formation of long-term courtship memory in adult Drosophila melanogaster.  Proc Natl Acad Sci U S A.  2009  106(15)  6381-6  19342482  
Arabidopsis  pda   Jin H, Hong Z, Su W, Li J.  A plant-specific calreticulin is a key retention factor for a defective brassinosteroid receptor in the endoplasmic reticulum.  Proc Natl Acad Sci U S A.  2009  106(32)  13612-7  19597144  
Zebrafish  ?  Koide T, Miyasaka N, Morimoto K, Asakawa K, Urasaki A, Kawakami K, Yoshihara Y.  Olfactory neural circuitry for attraction to amino acids revealed by transposon-mediated gene trap approach in zebrafish.  Proc Natl Acad Sci U S A.  2009  106(24)  9884-9  19497864  
Arabidopsis  rpd   Miura K, Agetsuma M, Kitano H, Yoshimura A, Matsuoka M, Jacobsen SE, Ashikari M.  A metastable DWARF1 epigenetic mutant affecting plant stature in rice.  Proc Natl Acad Sci U S A.  2009  106(27)  11218-23  19541604  
Arabidopsis  pst16472 ...  Ronceret A, Doutriaux MP, Golubovskaya IN, Pawlowski WP.  PHS1 regulates meiotic recombination and homologous chromosome pairing by controlling the transport of RAD50 to the nucleus.  Proc Natl Acad Sci U S A.  2009  106(47)  20121-6  19918061  
Zebrafish    Sugiyama M, Sakaue-Sawano A, Iimura T, Fukami K, Kitaguchi T, Kawakami K, Okamoto H, Higashijima S, Miyawaki A.  Illuminating cell-cycle progression in the developing zebrafish embryo.  Proc Natl Acad Sci U S A.  2009  106(49)  20812-7  19923430  
E.coli  ME9062(BW25...  Tal N, Schuldiner S.  A coordinated network of transporters with overlapping specificities provides a robust survival strategy.  Proc Natl Acad Sci U S A.  2009  106(22)  9051-6  19451626  
C.elegans    Tong A, Lynn G, Ngo V, Wong D, Moseley SL, Ewbank JJ, Goncharov A, Wu YC, Pujol N, Chisholm AD.  Negative regulation of Caenorhabditis elegans epidermal damage responses by death-associated protein kinase.  Proc Natl Acad Sci U S A.  2009  106(5)  1457-61  19164535  
Pathogenic Microbe  病原微生物  Yamasaki S, Matsumoto M, Takeuchi O, Matsuzawa T, Ishikawa E, Sakuma M, Tateno H, Uno J, Hirabayashi J, Mikami Y, Takeda K, Akira S, Saito T.  C-type lectin Mincle is an activating receptor for pathogenic fungus, Malassezia.  Proc Natl Acad Sci U S A.  2009  106(6)  1897-902  19171887  
Pathogenic Microbe  病原微生物  Yamasaki S, Matsumoto M, Takeuchi O, Matsuzawa T, Ishikawa E, Sakuma M, Tateno H, Uno J, Hirabayashi J, Mikami Y, Takeda K, Akira S, Saito T.  C-type lectin Mincle is an activating receptor for pathogenic fungus, Malassezia.  Proc Natl Acad Sci U S A.  2009  106(6)  1897-902  19171887  
C.elegans  tm2282  Alper S, Laws R, Lackford B, Boyd WA, Dunlap P, Freedman JH, Schwartz DA.  Identification of innate immunity genes and pathways using a comparative genomics approach.  Proc Natl Acad Sci U S A.  2008  105(19)  7016-21  18463287  
Zebrafish  SAG?  Asakawa K, Suster ML, Mizusawa K, Nagayoshi S, Kotani T, Urasaki A, Kishimoto Y, Hibi M, Kawakami K.  Genetic dissection of neural circuits by Tol2 transposon-mediated Gal4 gene and enhancer trapping in zebrafish.  Proc Natl Acad Sci U S A.  2008  105(4)  1255-60  18202183  
C.elegans  tm1652  Bendena WG, Boudreau JR, Papanicolaou T, Maltby M, Tobe SS, Chin-Sang ID.  A Caenorhabditis elegans allatostatin/galanin-like receptor NPR-9 inhibits local search behavior in response to feeding cues.  Proc Natl Acad Sci U S A.  2008  105(4)  1339-42  18216257  
C.elegans  tm2064  Biron D, Wasserman S, Thomas JH, Samuel AD, Sengupta P.  An olfactory neuron responds stochastically to temperature and modulates Caenorhabditis elegans thermotactic behavior.  Proc Natl Acad Sci U S A.  2008  105(31)  11002-7  18667708  
Arabidopsis  pda  Bruce TJ, Matthes MC, Chamberlain K, Woodcock CM, Mohib A, Webster B, Smart LE, Birkett MA, Pickett JA, Napier JA.  cis-Jasmone induces Arabidopsis genes that affect the chemical ecology of multitrophic interactions with aphids and their parasitoids.  Proc Natl Acad Sci U S A.  2008  105(12)  4553-8  18356298  
Arabidopsis  pda  Chapman S, Faulkner C, Kaiserli E, Garcia-Mata C, Savenkov EI, Roberts AG, Oparka KJ, Christie JM.  The photoreversible fluorescent protein iLOV outperforms GFP as a reporter of plant virus infection.  Proc Natl Acad Sci U S A.  2008  105(50)  20038-43  19060199  
C.elegans  tm2715, tm2802...  Cui M, Allen MA, Larsen A, Macmorris M, Han M, Blumenthal T.  Genes involved in pre-mRNA 3'-end formation and transcription termination revealed by a lin-15 operon Muv suppressor screen.  Proc Natl Acad Sci U S A.  2008  105(43)  16665-70  18946043  
C.elegans  tm1632  Hellwig S, Bass BL.  A starvation-induced noncoding RNA modulates expression of Dicer-regulated genes.  Proc Natl Acad Sci U S A.  2008  105(35)  12897-902  18723671  
C.elegans  tm718  Ikeda DD, Duan Y, Matsuki M, Kunitomo H, Hutter H, Hedgecock EM, Iino Y.  CASY-1, an ortholog of calsyntenins/alcadeins, is essential for learning in Caenorhabditis elegans.  Proc Natl Acad Sci U S A.  2008  105(13)  5260-5  18381821  
Silkworm  カイコ  Ito K, Kidokoro K, Sezutsu H, Nohata J, Yamamoto K, Kobayashi I, Uchino K, Kalyebi A, Eguchi R, Hara W, Tamura T, Katsuma S, Shimada T, Mita K, Kadono-Okuda K.  Deletion of a gene encoding an amino acid transporter in the midgut membrane causes resistance to a Bombyx parvo-like virus.  Proc Natl Acad Sci U S A.  2008  105(21)  7523-7  18495929  
DNA  pCALNL5  Kohyama J, Kojima T, Takatsuka E, Yamashita T, Namiki J, Hsieh J, Gage FH, Namihira M, Okano H, Sawamoto K, Nakashima K.  Epigenetic regulation of neural cell differentiation plasticity in the adult mammalian brain.  Proc Natl Acad Sci U S A.  2008  105(46)  18012-7  19004774  
E.coli  ME9062(BW25...  Leichert LI, Gehrke F, Gudiseva HV, Blackwell T, Ilbert M, Walker AK, Strahler JR, Andrews PC, Jakob U.  Quantifying changes in the thiol redox proteome upon oxidative stress in vivo.  Proc Natl Acad Sci U S A.  2008  105(24)  8197-202  18287020  
Arabidopsis  pst  Miyagishima SY, Kuwayama H, Urushihara H, Nakanishi H.  Evolutionary linkage between eukaryotic cytokinesis and chloroplast division by dynamin proteins.  Proc Natl Acad Sci U S A.  2008  105(39)  15202-7  18809930  
Bacillus subtilis    Miyagishima SY, Kuwayama H, Urushihara H, Nakanishi H.  Evolutionary linkage between eukaryotic cytokinesis and chloroplast division by dynamin proteins.  Proc Natl Acad Sci U S A.  2008  105(39)  15202-7  18809930  
Cellular slime molds    Miyagishima SY, Kuwayama H, Urushihara H, Nakanishi H.  Evolutionary linkage between eukaryotic cytokinesis and chloroplast division by dynamin proteins.  Proc Natl Acad Sci U S A.  2008  105(39)  15202-7  18809930  
Animal cells    Murata T, Lin MI, Aritake K, Matsumoto S, Narumiya S, Ozaki H, Urade Y, Hori M, Sessa WC.  Role of prostaglandin D2 receptor DP as a suppressor of tumor hyperpermeability and angiogenesis in vivo.  Proc Natl Acad Sci U S A.  2008  105(50)  20009-14  19060214  
C.elegans  tm1979  Pierce-Shimomura JT, Chen BL, Mun JJ, Ho R, Sarkis R, McIntire SL.  Genetic analysis of crawling and swimming locomotory patterns in C. elegans.  Proc Natl Acad Sci U S A.  2008  105(52)  20982-7  19074276  
Arabidopsis  pda  Pujol C, Bailly M, Kern D, Maréchal-Drouard L, Becker H, Duchêne AM.  Dual-targeted tRNA-dependent amidotransferase ensures both mitochondrial and chloroplastic Gln-tRNAGln synthesis in plants.  Proc Natl Acad Sci U S A.  2008  105(17)  6481-5  18441100  
ES cell  KhES-1, KhE...  Suzuki K, Mitsui K, Aizawa E, Hasegawa K, Kawase E, Yamagishi T, Shimizu Y, Suemori H, Nakatsuji N, Mitani K.  Highly efficient transient gene expression and gene targeting in primate embryonic stem cells with helper-dependent adenoviral vectors.  Proc Natl Acad Sci U S A.  2008  105(37)  13781-6  18768795  
Barley  Haruna Nijo...  Taketa S, Amano S, Tsujino Y, Sato T, Saisho D, Kakeda K, Nomura M, Suzuki T, Matsumoto T, Sato K, Kanamori H, Kawasaki S, Takeda K.  Barley grain with adhering hulls is controlled by an ERF family transcription factor gene regulating a lipid biosynthesis pathway.  Proc Natl Acad Sci U S A.  2008  105(10)  4062-7  18316719  
Zebrafish  XIG8A, SAGp...  Urasaki A, Asakawa K, Kawakami K.  Efficient transposition of the Tol2 transposable element from a single-copy donor in zebrafish.  Proc Natl Acad Sci U S A.  2008  105(50)  19827-32  19060204  
Lotus / Glycine  L. japonicu...  Yano K, Yoshida S, Müller J, Singh S, Banba M, Vickers K, Markmann K, White C, Schuller B, Sato S, Asamizu E, Tabata S, Murooka Y, Perry J, Wang TL, Kawaguchi M, Imaizumi-Anraku H, Hayashi M, Parniske M.  CYCLOPS, a mediator of symbiotic intracellular accommodation.  Proc Natl Acad Sci U S A.  2008  105(51)  20540-5  19074278  
Arabidopsis  rpc00008  Amano Y, Tsubouchi H, Shinohara H, Ogawa M, Matsubayashi Y.  Tyrosine-sulfated glycopeptide involved in cellular proliferation and expansion in Arabidopsis.  Proc Natl Acad Sci U S A.  2007  104(46)  18333-8  17989228  
C.elegans  tm776  Blaise BJ, Giacomotto J, Elena B, Dumas ME, Toulhoat P, Ségalat L, Emsley L.  Metabotyping of Caenorhabditis elegans reveals latent phenotypes.  Proc Natl Acad Sci U S A.  2007  104(50)  19808-12  18077412  
Drosophila  16905R-1, 1...  Chertemps T, Duportets L, Labeur C, Ueda R, Takahashi K, Saigo K, Wicker-Thomas C.  A female-biased expressed elongase involved in long-chain hydrocarbon biosynthesis and courtship behavior in Drosophila melanogaster.  Proc Natl Acad Sci U S A.  2007  104(11)  4273-8  17360514  
Arabidopsis  pda  Cocuron JC, Lerouxel O, Drakakaki G, Alonso AP, Liepman AH, Keegstra K, Raikhel N, Wilkerson CG.  A gene from the cellulose synthase-like C family encodes a beta-1,4 glucan synthase.  Proc Natl Acad Sci U S A.  2007  104(20)  8550-5  17488821  
DNA  AxCANCre, A...  Dali-Youcef N, Mataki C, Coste A, Messaddeq N, Giroud S, Blanc S, Koehl C, Champy MF, Chambon P, Fajas L, Metzger D, Schoonjans K, Auwerx J.  Adipose tissue-specific inactivation of the retinoblastoma protein protects against diabesity because of increased energy expenditure.  Proc Natl Acad Sci U S A.  2007  104(25)  10703-8  17556545  
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