RRC (Research Resource Circulation)

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Resource Info.		Reference Info.
Species	Resource name	Author	Title	Journal	Year published	Volume	Pages	Pubmed ID
Rice	W0025,W1623...	Chung MC, Lee YI, Cheng YY, Chou YJ, Lu CF.	Chromosomal polymorphism of ribosomal genes in the genus Oryza.	Theor Appl Genet..	2008	116(6)	745-53	18214422
Rice	C9285,W0120	Hattori Y, Nagai K, Mori H, Kitano H, Matsuoka M, Ashikari M.	Mapping of three QTLs that regulate internode elongation in deepwater rice.	Breed. Sci.	2008	58	39-46
Rice	W1549,W0025...	Khan N, Katsube-Tanaka T, Iida S, Yamaguchi T, Nakano J, Tsujimoto H.	Diversity of rice glutelin polypeptides in wild species assessed by the higher-temperature sodium dodecyl sulfate-polyacrylamide gel electrophoresis and subunit-specific antibodies.	Electrophoresis..	2008	29(6)	1308-16	18288782
Rice	W1934	Lu T, Yu S, Fan D, Mu J, Shangguan Y, Wang Z, Minobe Y, Lin Z, Han B.	Collection and comparative analysis of 1888 full-length cDNAs from wild rice Oryza rufipogon Griff. W1943.	DNA Res..	2008	15(5)	285-95	18687674
Rice	Induced Mut...	Suzuki T, Eiguchi M, Kumamaru T, Satoh H, Matsusaka H, Moriguchi K, Nagato Y, Kurata N.	MNU-induced mutant pools and high performance TILLING enable finding of any gene mutation in rice.	Mol Genet Genomics..	2008	279(3)	213-23	17952471
Rice	W0107,W0137...	Teranishi C, Yoshida K, Miyashita NT.	DNA polymorphism in the SUPERWOMAN1 (SPW1) locus of the wild rice Oryza rufipogon and its related species.	Genes Genet Syst..	2008	83(5)	403-15	19168991
Rice		小林博昭	遺跡出土のイネについてーイネ籾殻表皮細胞プラント・オパールと灰像試料からの考察ー.	「芹沢長介先生追悼考古・民族・歴史学論叢」	2008		595-606
Rice	C9285,W0120...	Hattori, Y., Miura, K., Asano, K., Yamamoto, E., Mori, H., Kitano, H., Matsuoka, M., Ashikari, M.	A major QTL confers rapid internode elongation in response to water rise in deepwater rice.	Breed. Sci.	2007	57	305-314
Rice	T0001,T0002...	Kato H, Tezuka K, Feng YY, Kawamoto T, Takahashi H, Mori K, Akagi H.	Structural diversity and evolution of the Rf-1 locus in the genus Oryza.	Heredity..	2007	99(5)	516-24	17622268
Rice	O. rufipogo...	Kawakami S, Ebana K, Nishikawa T, Sato Y, Vaughan DA, Kadowaki K.	Genetic variation in the chloroplast genome suggests multiple domestication of cultivated Asian rice (Oryza sativa L.).	Genome..	2007	50(2)	180-7	17546083
Rice	W1294,W1866...	Miyabayashi, T., Nonomura, K.I., Morishima, H., Kurata N.	Genome size of twenty wild Oryza Species determined by flow cytometric and chromosome analyses.	Breed. Sci.	2007	57	73-78
Rice	W1822,W0610...	Xu JH, Cheng C, Tsuchimoto S, Ohtsubo H, Ohtsubo E.	Phylogenetic analysis of Oryza rufipogon strains and their relations to Oryza sativa strains by insertion polymorphism of rice SINEs.	Genes Genet Syst..	2007	82(3)	217-29	17660692
Rice	W0106,W0008	Ammiraju, J. S. S., Luo, M., Goicoechea, J. L., Wang, W., Kudrna, D., Muller, C., Talag, J., Kim, H., Sisneros, N. B., Blackmon, B., Fang, E., Tomkins, J. B., Brar, D., MacKilp, D., McCouch, S., Kurata, N., Lambert, G., Galbraith, D. W., Arumuganathan, K., Rao, K., Walling, J. G., Gill, N., Yu, Y., SanMiguel, P., Soderlund, C., Jackson S., Wing, R. A.	The Oryza bacterial artificial chromosome library resource: Construction and analysis of 12 deep-coverage large-insert BAC libraries that represent the 10 genomes types of the genus Oryza.	Genome Res..	2006	16	140-147	16344555
Rice	W1962,T65	Fujita D, Doi K, Yoshimura A, Yasui H.	Molecular mapping of a novel gene, Grh5, conferring resistance to green rice leafhopper (Nephotettix cincticeps Uhler) in rice, Oryza sativa L.	Theor Appl Genet..	2006	113(4)	567-73	16835766
Rice	Induced Mut...	Kawakatsu T, Itoh J, Miyoshi K, Kurata N, Alvarez N, Veit B, Nagato Y.	PLASTOCHRON2 regulates leaf initiation and maturation in rice.	Plant Cell..	2006	18(3)	612-25	16461585
Rice	Database	Kurata, N.and Yamazaki, Y.	Oryzabase: an integrated biological and genome information database for rice.	Plant Physiol.	2006	140	12-17	16403737
Rice	Induced Mut...	Abe, M., Itoh, J-I., Nagato, Y.	wavy leaf 1 causes depressed growth of above- and under-ground organs in rice.	Rice Genet. Newslett.	2005	21	50-51
Rice	?	Ashikari M, Sakakibara H, Lin S, Yamamoto T, Takashi T, Nishimura A, Angeles ER, Qian Q, Kitano H, Matsuoka M.	Cytokinin oxidase regulates rice grain production.	Science.	2005	309(5735)	741-5	15976269
Rice	?	Hong Z, Ueguchi-Tanaka M, Fujioka S, Takatsuto S, Yoshida S, Hasegawa Y, Ashikari M, Kitano H, Matsuoka M.	The Rice brassinosteroid-deficient dwarf2 mutant, defective in the rice homolog of Arabidopsis DIMINUTO/DWARF1, is rescued by the endogenously accumulated alternative bioactive brassinosteroid, dolichosterone.	Plant Cell..	2005	17(8)	2243-54	15994910
Rice	Induced Mut...	Horigome, A., Ikeda, K., Ito, M., Yamaguchi, Y., Nagato, Y.	OPEN BEAK gene regulates floral morphogenesis in rice.	Rice Genet. Newslett.	2005	21	39-41
Rice	Induced Mut...	Ikeda K, Nagasawa N, Nagato Y.	ABERRANT PANICLE ORGANIZATION 1 temporally regulates meristem identity in rice.	Dev Biol.	2005	282(2)	349-60	15950602
Rice	Induced Mut...	Kawakatsu, T., Nagato, Y.	PLASTOCHRON3 gene regulates leaf initiation rate and termination of vegetative phase.	Rice Genet. Newslett.	2005	21	36-39
Rice	Induced Mut...	Kinae, T., Hong, S.-K., Nagato, Y.	APICAL DISPLACEMENT 1 gene regulates apical-basal pattern formation in rice embryo.	Plant Sci.	2005	168	1345-1351
Rice	O. glaberri...	Kurata, N., Miyoshi, K., Nonomura, K., Yamazaki, Y., Ito, Y.	Rice mutants and genes related to organ development, morphogenesis and physiological traits.	Plant Cell Physiol.	2005	46	48-62	15659430
Rice	Induced Mut...	Kuroshita, H., Itoh, J-I., Nagato, Y.	FLATTENED SHOOT MERISTEM is required for shoot meristem maintenance in rice.	Rice Genet. Newslett.	2005	21	52-53
Rice	W0120,W0157...	Nishikawa, T., Vaughan, D.A. Kadowaki, K.	Phylogenetic analysis of Oryza species, based on simple sequence repeats and their flanking nucleotide sequences from the mitochondrial and chloroplast genomes.	Theor Appl Genet..	2005	110	696-705	15650813
Rice	?	Sentoku, N., Kato, H., Kitano, H.,Imai R.	OsMADS22, an STMADS11-like MADS-box gene of rice, is expressed in non-vegetative tissues and its ectopic expression induces spikelet meristem indeterminancy.	Mol Genet Genomics..	2005	273	1-9	15682279
Rice	C5287	Taguchi-Shiobara, F., Kato, H.	Alleles in three rice panicle genes, Dn1, Ur1 and Cl, and the effects of genetic backgrounds.	Rice Genet. Newslett.	2005	22	34-35
Rice	TCM2410	Tanabe S, Ashikari M, Fujioka S, Takatsuto S, Yoshida S, Yano M, Yoshimura A, Kitano H, Matsuoka M, Fujisawa Y, Kato H, Iwasaki Y.	A novel cytochrome P450 is implicated in brassinosteroid biosynthesis via the characterization of a rice dwarf mutant, dwarf11, with reduced seed length.	Plant Cell..	2005	17(3)	776-90	15705958
Rice	?password	Tanaka N, Takahashi H, Kitano H, Matsuoka M, Akao S, Uchimiya H, Komatsu S.	Proteome approach to characterize the methylmalonate-semialdehyde dehydrogenase that is regulated by gibberellin.	J Proteome Res.	2005	4(5)	1575-82	16212409
Rice	Induced Mut...	Ueguchi-Tanaka M, Ashikari M, Nakajima M, Itoh H, Katoh E, Kobayashi M, Chow TY, Hsing YI, Kitano H, Yamaguchi I, Matsuoka M.	GIBBERELLIN INSENSITIVE DWARF1 encodes a soluble receptor for gibberellin.	Nature.	2005	437(7059)	693-8	16193045
Rice	W0106	Wing RA, Ammiraju JS, Luo M, Kim H, Yu Y, Kudrna D, Goicoechea JL, Wang W, Nelson W, Rao K, Brar D, Mackill DJ, Han B, Soderlund C, Stein L, SanMiguel P, Jackson S.	The oryza map alignment project: the golden path to unlocking the genetic potential of wild rice species.	Plant Mol Biol..	2005	59(1)	53-62	16217601
Rice	W0106, W063...	Xu, J-H., Kurata, N., Akimoto, M., Ohtsubo, H. and Ohtsubo, E.	Identification and characterization of Australian wild rice strains of Oryza meridionalis and Oryza rufipogon by SINE insertion polymorphism.	Genes Genet Syst..	2005	80	129-134	16172525
Rice	Induced Mut...	Yamaki S, Satoh H, Nagato Y.	Gypsy embryo specifies ovule curvature by regulating ovule/integument development in rice.	Planta..	2005	222(3)	408-17	16001259
Rice	W0012	You M, Nishiguchi T, Saito A, Isawa T, Mitsui H, Minamisawa K.	Expression of the nifH gene of a Herbaspirillum endophyte in wild rice species: daily rhythm during the light-dark cycle.	Appl Environ Microbiol.	2005	71(12)	8183-90	16332801
Rice	?	Crofts A. J., H. Washida, T. W. Okita, M. Ogawa, T. Kumamaru and H. Satoh.	Targeting of proteins to ER-derived compartments in plants: The importance of RNA localization.	Plant Physiol.	2004	136	3414-3419	15542494
Rice	Induced Mut...	Gomi, K., Sasaki, A., Itoh, H.,Ueguchi-Tanaka M, Ashikari M, Kitano H, Matsuoka M.	GID2, an F-box subunit of the SCF E3 complex, specifically interacts with phospholylated SLR1 protein and regulates the gibberellin-dependent degradation of SLR1 in rice.	Plant J.	2004	37	626-634	14756772
Rice	d35?,d18?,I...	Itoh, H., Tatsumi, T., Sakamoto, T., Otomo K, Toyomasu T, Kitano H, Ashikari M, Ichihara S, Matsuoka M.	A rice semi-dwarf gene, Tan-Ginbozu (D35), encodes the gibberellin biosynthesis enzyme, ent-kaurene oxidase.	Plant Mol Biol..	2004	54	533-547	15316288
Rice	Tanginbozu?	Jan A, Yang G, Nakamura H, Ichikawa H, Kitano H, Matsuoka M, Matsumoto H, Komatsu S.	Characterization of a xyloglucan endotransglucosylase gene that is up-regulated by gibberellin in rice.	Plant Physiol.	2004	136(3)	3670-81	15516498
Rice	Tanginbozu?	Konishi, H., Kitano, H. and Komatsu, S.	Identification of rice root proteins regulated by gibberellin using proteome analysis Plant.	Cell and Environment	2004	28	328-339
Rice	?	Minamisawa K, Nishioka K, Miyaki T, Ye B, Miyamoto T, You M, Saito A, Saito M, Barraquio WL, Teaumroong N, Sein T, Sato T.	Anaerobic nitrogen-fixing consortia consisting of clostridia isolated from gramineous plants.	Appl Environ Microbiol.	2004	70(5)	3096-102	15128572
Rice	W2002, W201...	Saitoh, K., Onishi, K., Mikami, I.,Thidar, K., Sano, Y.	Allelic diversification at the C (OsC1) locus of wild and cultivated rice: nucleotide changes associated with phenotypes.	Genetics.	2004	168	997-1007	15514070
Rice	?	Sakamoto, T., Miura, K., Itoh, H.,Tatsumi T, Ueguchi-Tanaka M, Ishiyama K, Kobayashi M, Agrawal GK, Takeda S, Abe K, Miyao A, Hirochika H, Kitano H, Ashikari M, Matsuoka M.	An overview of gibberellin metabolism enzyme genes and their related mutants in rice.	Plant Physiol.	2004	134	1642-1653	15075394
Rice	Local Varie...	Yamanaka S., Nakamura I., Watanabe K.N., Sato Y-I.	Identification of SNPs in the waxy gene among glutinous rice cultivars and their evolutionary significance during the domestication process of rice.	Theor Appl Genet..	2004	108	1200-1204	14740088
Rice	W108, W120,...	Yoshida, K., Miyashita, N.T. Ishii, T.	Nucleotide polymorphism in the Adh1 locus region of the wild rice Oryza rufipogon.	Theor Appl Genet..	2004	109	1406-1416	15480535
Rice		大越昌子・胡景杰・石川隆二・藤村達人	マイクロサテライトマーカーを用いた日本の在来イネの分類	育種学研究	2004	6	125-133
Rice	Wild rice	Cheng, C., Motohashi, R., Tsuchimoto, S., Fukuta, Y., Ohtsubo, H. Ohtsubo, E.	Polyphyletic Origin of Cultivated Rice: Based on the Interspersion Pattern of SINEs.	Mol Biol Evol..	2003	20	67-75	12519908
Rice	Induced Mut...	Hong, Z., Ueguchi-Tanaka, M., Umemura, K.,Uozu S, Fujioka S, Takatsuto S, Yoshida S, Ashikari M, Kitano H, Matsuoka M.	A rice brassinosteroid-deficient mutant, ebisu dwarf(d2), is caused by a loss of function of a new member of cytochrome P450.	Plant Cell..	2003	15	2900-2910	14615594
Rice	W1987, W012...	Kikuchi, K., Terauchi, K., Wada, M. Hirano, H.Y.	The plant MITE mPing is mobilized in anther culture.	Nature.	2003	421	167-170	12520303
Rice	Local Varie...	Kuroda Y., Urairong H., Sato Y-I.	Population genetic structure of wild rice (Oryza rufipogon) in mainland Southeast Asia as revealed by microsatellite polymorphisms.	Tropics	2003	12	159-170

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