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Species Resource name Author Title Journal Year published Volume Pages Pubmed ID
Lotus / Glycine  Super Root  Bo Jian, Wensheng Hou, Cunxiang Wu, Bin Liu, Wei Liu, Shikui Song, Yurong Bi and Tianfu Han  Agrobacterium rhizogenes-mediated transformation of Superroot-derived Lotus corniculatus plants: a valuable tool for functional genomics  BMC Plant Biology  2009  9-78     
Lotus / Glycine  L. japonicu...  Hakoyama T, Watanabe H, Tomita J, Yamamoto A, Sato S, Mori Y, Kouchi H, Suganuma N.  Nicotianamine synthase specifically expressed in root nodules of Lotus japonicus.  Planta..  2009  230(2)  309-17  19455352  
Lotus / Glycine  Lotus japon...  Hanyu M, Fujimoto H, Tejima K, Saeki K.  Functional differences of two distinct catalases in Mesorhizobium loti MAFF303099 under free-living and symbiotic conditions.  J Bacteriol.  2009  191(5)  1463-71  19074374  
Lotus / Glycine  MG-20  Hiraoka Y, Ueda H, Sugimoto Y.  Molecular responses of Lotus japonicus to parasitism by the compatible species Orobanche aegyptiaca and the incompatible species Striga hermonthica.  J Exp Bot..  2009  60(2)  641-50  19088337  
Lotus / Glycine  L. japonicu...  Ichida H, Yoneyama K, Koba T, Abe T.  Epigenetic modification of rhizobial genome is essential for efficient nodulation.  Biochem Biophys Res Commun.  2009  389(2)  301-4  19720053  
Lotus / Glycine  Lotus japon...  Ishida K, Niwa Y, Yamashino T, Mizuno T.  A genome-wide compilation of the two-component systems in Lotus japonicus.  DNA Res..  2009  16(4)  237-47  19675111  
Lotus / Glycine    Kubo M, Ueda H, Park P, Kawaguchi M, Sugimoto Y.  Reactions of Lotus japonicus ecotypes and mutants to root parasitic plants.  J Plant Physiol..  2009  166(4)  353-62  18760498  
Lotus / Glycine  Gifu B-129,...  Maekawa-Yoshikawa M, Müller J, Takeda N, Maekawa T, Sato S, Tabata S, Perry J, Wang TL, Groth M, Brachmann A, Parniske M.  The temperature-sensitive brush mutant of the legume Lotus japonicus reveals a link between root development and nodule infection by rhizobia.  Plant Physiol.  2009  149(4)  1785-96  19176723  
Lotus / Glycine  L. japonicu...  Masahiro Okada, Sungwook Park, Takahiro Koshizawa and Minoru Ueda.  (R)-Eucomic acid, a leaf-opening factor of the model organism, Lotus japonicus.  Tetrahedron  2009  65  2136-2141   
Lotus / Glycine  Lotus japon...  Perry J, Brachmann A, Welham T, Binder A, Charpentier M, Groth M, Haage K, Markmann K, Wang TL, Parniske M.  TILLING in Lotus japonicus identified large allelic series for symbiosis genes and revealed a bias in functionally defective EMS alleles towards glycine replacements.  Plant Physiol.  2009  ()    19641028  
Lotus / Glycine  Gifu B-129,...  S. Okazaki, S. Okabe, M. Higashi, Y. Shimoda, S. Sato, S. Tabata, M. Hashiguchi, R. Akashi and K. Saeki.  Identification and functional analysis of type III effector proteins in Mesorhizobium loti.  Molecular Plant-Microbe Interaction  2009       
Lotus / Glycine  L: MG20  Shimoda Y, Shimoda-Sasakura F, Kucho K, Kanamori N, Nagata M, Suzuki A, Abe M, Higashi S, Uchiumi T.  Overexpression of class 1 plant hemoglobin genes enhances symbiotic nitrogen fixation activity between Mesorhizobium loti and Lotus japonicus.  Plant J.  2009  57(2)  254-63  18801013  
Lotus / Glycine  L: MG20  Tominaga A, Nagata M, Futsuki K, Abe H, Uchiumi T, Abe M, Kucho KI, Hashiguchi M, Akashi R, Hirsch AM, Arima S, Suzuki A.  Enhanced nodulation and nitrogen fixation in the ABA low-sensitive mutant enf1 (enhanced nitrogen fixation 1) of Lotus japonicus.  Plant Physiol.  2009  ()    19776164  
Lotus / Glycine  G.max  Yoichi Kita, Moemen S. Hanafy, Michihito Deguchi, Hisakazu Hasegawa, Teruhiko Terakawa, Keisuke Kitamura and Masao Ishimoto.  Generation and characterization of herbicide-resistant soybean plants expressing novel phosphinothricin N-acetyltransferase genes.  Breeding Science.  2009  59(3)  245-251   
Lotus / Glycine  Lotus japon...  Yokota K, Fukai E, Madsen LH, Jurkiewicz A, Rueda P, Radutoiu S, Held M, Hossain MS, Szczyglowski K, Morieri G, Oldroyd GE, Downie JA, Nielsen MW, Rusek AM, Sato S, Tabata S, James EK, Oyaizu H, Sandal N, Stougaard J.  Rearrangement of actin cytoskeleton mediates invasion of Lotus japonicus roots by Mesorhizobium loti.  Plant Cell..  2009  21(1)  267-84  19136645  
Lotus / Glycine  Miyakojima ...  Akihiro Suzuki, Hisatoshi Hara, Tomoyo Kinoue, Mikiko Abe, Toshiki Uchiumi, Ken-ichi Kucho, Shiro Higashi, Ann M. Hirsch and Susumu Arima  Split-root study of autoregulation of nodulation in the model legume Lotus japonicus  Journal of Plant Research  2008  121 (2)     
Lotus / Glycine  Gifu B-129 ...  Asamizu E, Shimoda Y, Kouchi H, Tabata S, Sato S.  A positive regulatory role for LjERF1 in the nodulation process is revealed by systematic analysis of nodule-associated transcription factors of Lotus japonicus.  Plant Physiol.  2008  147(4)  2030-40  18567832  
Lotus / Glycine  Lotus japon...  Charpentier M, Bredemeier R, Wanner G, Takeda N, Schleiff E, Parniske M.  Lotus japonicus CASTOR and POLLUX are ion channels essential for perinuclear calcium spiking in legume root endosymbiosis.  Plant Cell..  2008  20(12)  3467-79  19106374  
Lotus / Glycine  L. japonicu...  Fukai E, Dobrowolska AD, Madsen LH, Madsen EB, Umehara Y, Kouchi H, Hirochika H, Stougaard J.  Transposition of a 600 thousand-year-old LTR retrotransposon in the model legume Lotus japonicus.  Plant Mol Biol..  2008  68(6)  653-63  18802778  
Lotus / Glycine    Hamwieh A, Xu D.  Conserved salt tolerance quantitative trait locus (QTL) in wild and cultivated soybeans.  Breeding Science.  2008  58(4)  355-359   
Lotus / Glycine  Lotus japon...  Hougaard BK, Madsen LH, Sandal N, de Carvalho Moretzsohn M, Fredslund J, Schauser L, Nielsen AM, Rohde T, Sato S, Tabata S, Bertioli DJ, Stougaard J.  Legume anchor markers link syntenic regions between Phaseolus vulgaris, Lotus japonicus, Medicago truncatula and Arachis.  Genetics.  2008  179(4)  2299-312  18689902  
Lotus / Glycine  Lotus japon...  Keita Suwabe, Kentaro Yano.  Omics databases in plant science: key to systems biology.  Plant Biotechnology.  2008  25  413-422   
Lotus / Glycine    Koutaro SUZUKI, Hiroko OGURO, Takeo YAMAKAWA, Akihiro YAMAMOTO , Shoichiro AKAO and Yuichi SAEKI.  Diversity and distribution of indigenous soybean-nodulating rhizobia in the Okinawa islands, Japan.  Soil Science & Plant Nutrition  2008  54(2)  237-246   
Lotus / Glycine  G: wild soy...  Kyohei Kanamaru, Shaodong Wang, Tetsuya Yamada, Jun Abe and Keisuke Kitamura.  Genetic analysis and biochemical characterization of the high lutein trait of wild soybean (Glycine soja Sieb. et Zucc.).  Breeding Science.  2008  58(4)  393-400   
Lotus / Glycine    Liolios K, Mavromatis K, Tavernarakis N, Kyrpides NC.  The Genomes On Line Database (GOLD) in 2007: status of genomic and metagenomic projects and their associated metadata.  Nucleic Acids Res.  2008  36(Database issue)  D475-9  17981842  
Lotus / Glycine  MG-20  Maekawa T, Kusakabe M, Shimoda Y, Sato S, Tabata S, Murooka Y, Hayashi M.  Polyubiquitin promoter-based binary vectors for overexpression and gene silencing in Lotus japonicus.  Mol Plant Microbe Interact..  2008  21(4)  375-82  18321183  
Lotus / Glycine  G.max  Masayuki Shibata, Kiyohiko Takayama, Aya Ujiie, Tetsuya Yamada, Jun Abe and Keisuke Kitamura.  Genetic relationship between lipid content and linolenic acid concentration in soybean seeds.  Breeding Science.  2008  58(4)  361-366   
Lotus / Glycine  Gifu B-129  Mishima E, Hosokawa A, Imaizumi-Anraku H, Saito K, Kawaguchi M, Saeki K.  Requirement for Mesorhizobium loti ornithine transcarbamoylase for successful symbiosis with Lotus japonicus as revealed by an unexpected long-range genome deletion.  Plant Cell Physiol.  2008  49(3)  301-13  18184692  
Lotus / Glycine  L:MG20  Nagata M, Murakami E, Shimoda Y, Shimoda-Sasakura F, Kucho K, Suzuki A, Abe M, Higashi S, Uchiumi T.  Expression of a class 1 hemoglobin gene and production of nitric oxide in response to symbiotic and pathogenic bacteria in Lotus japonicus.  Mol Plant Microbe Interact..  2008  21(9)  1175-83  18700822  
Lotus / Glycine  Lotus japon...  Sato S, Nakamura Y, Kaneko T, Asamizu E, Kato T, Nakao M, Sasamoto S, Watanabe A, Ono A, Kawashima K, Fujishiro T, Katoh M, Kohara M, Kishida Y, Minami C, Nakayama S, Nakazaki N, Shimizu Y, Shinpo S, Takahashi C, Wada T, Yamada M, Ohmido N, Hayashi M, Fukui K, Baba T, Nakamichi T, Mori H, Tabata S.  Genome structure of the legume, Lotus japonicus.  DNA Res..  2008  15(4)  227-39  18511435  
Lotus / Glycine    Suzuki A, Yamashita K, Ishihara M, Nakahara K, Abe M, Kucho K, Uchiumi T, Higashi S, Arima S.  Enhanced symbiotic nitrogen fixation by Lotus japonicus containing an antisense b -1,3-glucanase gene.  Plant Biotechnology.  2008  25  357-360   
Lotus / Glycine  G.max mutan...  T. Anai, T. Yamada, R. Hideshima, T. Kinoshita, S. M. Rhaman and Y. Takagi.  Two high-oleic-acid soybean mutants, M23 and KK21, have disrupted microsomal omega-6 fatty acid desaturase, encoded by GmFAD2-1a.  Breeding Science.  2008  58(4)  447-452   
Lotus / Glycine    Tanaka H, Toyama J, Hashiguchi M, Kutsuna Y, Tsuruta S, Akashi R, Hoffmann F.  Transgenic superroots of Lotus corniculatus can be regenerated from superroot-derived leaves following Agrobacterium-mediated transformation.  J Plant Physiol..  2008  165(12)  1313-6  18471930  
Lotus / Glycine    Umezawa T, Sakurai T, Totoki Y, Toyoda A, Seki M, Ishiwata A, Akiyama K, Kurotani A, Yoshida T, Mochida K, Kasuga M, Todaka D, Maruyama K, Nakashima K, Enju A, Mizukado S, Ahmed S, Yoshiwara K, Harada K, Tsubokura Y, Hayashi M, Sato S, Anai T, Ishimoto M, Funatsuki H, Teraishi M, Osaki M, Shinano T, Akashi R, Sakaki Y, Yamaguchi-Shinozaki K, Shinozaki K.  Sequencing and analysis of approximately 40,000 soybean cDNA clones from a full-length-enriched cDNA library.  DNA Res..  2008  15(6)  333-46  18927222  
Lotus / Glycine  Gifu B-129,...  Wang X, Sato S, Tabata S, Kawasaki S.  A high-density linkage map of Lotus japonicus based on AFLP and SSR markers.  DNA Res..  2008  15(5)  323-32  18794159  
Lotus / Glycine  L. japonicu...  Yano K, Yoshida S, Müller J, Singh S, Banba M, Vickers K, Markmann K, White C, Schuller B, Sato S, Asamizu E, Tabata S, Murooka Y, Perry J, Wang TL, Kawaguchi M, Imaizumi-Anraku H, Hayashi M, Parniske M.  CYCLOPS, a mediator of symbiotic intracellular accommodation.  Proc Natl Acad Sci U S A.  2008  105(51)  20540-5  19074278  
Lotus / Glycine  Lotus japon...  Gondo T, Sato S, Okumura K, Tabata S, Akashi R, Isobe S.  Quantitative trait locus analysis of multiple agronomic traits in the model legume Lotus japonicus.  Genome..  2007  50(7)  627-37  17893740  
Lotus / Glycine  Gifu B-129  Günther C, Schlereth A, Udvardi M, Ott T.  Metabolism of reactive oxygen species is attenuated in leghemoglobin-deficient nodules of Lotus japonicus.  Mol Plant Microbe Interact..  2007  20(12)  1596-603  17990967  
Lotus / Glycine  Misuzudaizu...  Hisano H, Sato S, Isobe S, Sasamoto S, Wada T, Matsuno A, Fujishiro T, Yamada M, Nakayama S, Nakamura Y, Watanabe S, Harada K, Tabata S.  Characterization of the soybean genome using EST-derived microsatellite markers.  DNA Res..  2007  14(6)  271-81  18192281  
Lotus / Glycine  L: MG-20  Ichida H, Matsuyama T, Abe T, Koba T.  DNA adenine methylation changes dramatically during establishment of symbiosis.  FEBS J..  2007  274(4)  951-62  17250744  
Lotus / Glycine  Gifu B-129  Kai K, Wakasa K, Miyagawa H.  Metabolism of indole-3-acetic acid in rice: identification and characterization of N-beta-D-glucopyranosyl indole-3-acetic acid and its conjugates.  Phytochemistry.  2007  68(20)  2512-22  17628621  
Lotus / Glycine  L. japonicu...  Küster H, Becker A, Firnhaber C, Hohnjec N, Manthey K, Perlick AM, Bekel T, Dondrup M, Henckel K, Goesmann A, Meyer F, Wipf D, Requena N, Hildebrandt U, Hampp R, Nehls U, Krajinski F, Franken P, Pühler A.  Development of bioinformatic tools to support EST-sequencing, in silico- and microarray-based transcriptome profiling in mycorrhizal symbioses.  Phytochemistry.  2007  68(1)  19-32  17081576  
Lotus / Glycine  G.max  Maria Stefanie Dwiyanti, Aya Ujiie, Le Thi Bich Thuy, Tetsuya Yamada and Keisuke Kitamura.  Genetic Analysis of High α-tocopherol Content in Soybean Seeds.  Breeding Science.  2007  57(1)  23-28   
Lotus / Glycine    Matsui A, Yin Y, Yamanaka K, Iwasaki M, Ashihara H.  Metabolic fate of nicotinamide in higher plants.  Physiol Plant..  2007  131(2)  191-200  18251891  
Lotus / Glycine  Gifu B-129  Okazaki S, Hattori Y, Saeki K.  The Mesorhizobium loti purB gene is involved in infection thread formation and nodule development in Lotus japonicus.  J Bacteriol.  2007  189(22)  8347-52  17827288  
Lotus / Glycine    Poch HL, López RH, Clark SJ.  Ecotypes of the model legume Lotus japonicus vary in their interaction phenotypes with the root-knot nematode Meloidogyne incognita.  Ann Bot..  2007  99(6)  1223-9  17475628  
Lotus / Glycine  L. japonicu...  Sato S, Nakamura Y, Asamizu E, Isobe S, Tabata S.  Genome sequencing and genome resources in model legumes.  Plant Physiol.  2007  144(2)  588-93  17556522  
Lotus / Glycine    Schumpp O, Ramel ME, Gugerli P, Broughton WJ, Deakin WJ.  Identification of a Lotus viral pathogen.  J Plant Res..  2007  120(5)  651-4  17680177  
Lotus / Glycine  G.max  Shaodong Wang, Kyohei Kanamaru, Wenbin Li, Jun Abe, Tetsuya Yamada and Keisuke Kitamura.  Simultaneous Accumulation of High Contents of α-Tocopherol and Lutein is Possible in Seeds of Soybean (Glycine max (L.) Merr.)  Breeding Science.  2007  57(4)  297-304   
Lotus / Glycine  MG-20  Shimada N, Sato S, Akashi T, Nakamura Y, Tabata S, Ayabe S, Aoki T.  Genome-wide analyses of the structural gene families involved in the legume-specific 5-deoxyisoflavonoid biosynthesis of Lotus japonicus.  DNA Res..  2007  14(1)  25-36  17452423