RRC (Research Resource Circulation)

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Resource Info.		Reference Info.
Species	Resource name	Author	Title	Journal	Year published	Volume	Pages	Pubmed ID
Information	Rice-Oryzab...	Mochida K, Shinozaki K.	Genomics and bioinformatics resources for crop improvement.	Plant Cell Physiol.	2010	51(4)	497-523	20208064
Information	Rice-Oryzab...	Taner Z. Sen, Lisa C. Harper, Mary L. Schaeffer, Carson M. Andorf, Trent E. Seigfried, Darwin A. Campbell, and Carolyn J. Lawrence	Choosing a genome browser for a Model Organism Database: surveying the Maize community	Database	2010
Information	Rice-Oryzab...	Whipple CJ, Hall DH, DeBlasio S, Taguchi-Shiobara F, Schmidt RJ, Jackson DP.	A conserved mechanism of bract suppression in the grass family.	Plant Cell..	2010	22(3)	565-78	20305121
Information	NBRP-DB	Yamazaki Y, Akashi R, Banno Y, Endo T, Ezura H, Fukami-Kobayashi K, Inaba K, Isa T, Kamei K, Kasai F, Kobayashi M, Kurata N, Kusaba M, Matuzawa T, Mitani S, Nakamura T, Nakamura Y, Nakatsuji N, Naruse K, Niki H, Nitasaka E, Obata Y, Okamoto H, Okuma M, Sato K, Serikawa T, Shiroishi T, Sugawara H, Urushibara H, Yamamoto M, Yaoita Y, Yoshiki A, Kohara Y.	NBRP databases: databases of biological resources in Japan.	Nucleic Acids Res.	2010	38(Database issue)	D26-32	19934255
Information	C.elegans	Bialas NJ, Inglis PN, Li C, Robinson JF, Parker JD, Healey MP, Davis EE, Inglis CD, Toivonen T, Cottell DC, Blacque OE, Quarmby LM, Katsanis N, Leroux MR.	Functional interactions between the ciliopathy-associated Meckel syndrome 1 (MKS1) protein and two novel MKS1-related (MKSR) proteins.	J Cell Sci..	2009	122(Pt 5)	611-24	19208769
Information	Oryzabase	Childs KL	Genomic and genetic database resources for the grasses.	Plant Physiol.	2009	149(1)	132-6	19126704
Information	KOMUGI	Francois Marais, Ansie Marais, Brent McCallum, and Zacharias Pretorius	Transfer of Leaf Rust and Stripe Rust Resistance Genes Lr62 and Yr42 from Aegilops neglecta Req. ex Bertol. to Common Wheat	Crop Sci	2009	49	871-879
Information	Drosophila	Jiang H, Edgar BA.	EGFR signaling regulates the proliferation of Drosophila adult midgut progenitors.	Development.	2009	136(3)	483-93	19141677
Information	Rice-Oryzab...	Junjian Ni, Anuradha Pujar, Ken Youens-Clark, Immanuel Yap, Pankaj Jaiswal, Isaak Tecle, Chih-Wei Tung, Liya Ren, William Spooner, Xuehong Wei, Shuly Avraham, Doreen Ware, Lincoln Stein, and Susan McCouch	Gramene QTL database: development, content and applications	Database	2009			20157478
Information	LegumeBase	Kuromori T, Takahashi S, Kondou Y, Shinozaki K, Matsui M.	Phenome analysis in plant species using loss-of-function and gain-of-function mutants.	Plant Cell Physiol.	2009	50(7)	1215-31	19502383
Information	Rice-Oryzab...	Mano S, Miwa T, Nishikawa S, Mimura T, Nishimura M.	Seeing is believing: on the use of image databases for visually exploring plant organelle dynamics.	Plant Cell Physiol.	2009	50(12)	2000-14	19755394
Information	C.elegans	Marza E, Simonsen KT, Færgeman NJ, Lesa GM.	Expression of ceramide glucosyltransferases, which are essential for glycosphingolipid synthesis, is only required in a small subset of C. elegans cells.	J Cell Sci..	2009	122(Pt 6)	822-833	19240113
Information	silkworm	Meng Y, Katsuma S, Daimon T, Banno Y, Uchino K, Sezutsu H, Tamura T, Mita K, Shimada T.	The silkworm mutant lemon (lemon lethal) is a potential insect model for human sepiapterin reductase deficiency.	J Biol Chem.	2009	()		19246455
Information	silkworm	Meng Y, Katsuma S, Mita K, Shimada T.	Abnormal red body coloration of the silkworm, Bombyx mori, is caused by a mutation in a novel kynureninase.	Genes Cells..	2009	14(2)	129-40	19170761
Information	Barley	Mochida K, Yoshida T, Sakurai T, Ogihara Y, Shinozaki K.	TriFLDB: a database of clustered full-length coding sequences from Triticeae with applications to comparative grass genomics.	Plant Physiol.	2009	150(3)	1135-46	19448038
Information	zebrafish	Ohata S, Kinoshita S, Aoki R, Tanaka H, Wada H, Tsuruoka-Kinoshita S, Tsuboi T, Watabe S, Okamoto H.	Neuroepithelial cells require fucosylated glycans to guide the migration of vagus motor neuron progenitors in the developing zebrafish hindbrain.	Development.	2009	136(10)	1653-63	19369395
Information	LegumeBase	Perry J, Brachmann A, Welham T, Binder A, Charpentier M, Groth M, Haage K, Markmann K, Wang TL, Parniske M.	TILLING in Lotus japonicus identified large allelic series for symbiosis genes and revealed a bias in functionally defective ethyl methanesulfonate alleles toward glycine replacements.	Plant Physiol.	2009	151(3)	1281-91	19641028
Information	Oryzabase	Sachs MM	Cereal germplasm resources.	Plant Physiol.	2009	149(1)	148-51	19126707
Information	E. coli	Salem AM, Nakano T, Takuwa M, Matoba N, Tsuboi T, Terato H, Yamamoto K, Yamada M, Nohmi T, Ide H.	Genetic analysis of repair and damage tolerance mechanisms for DNA-protein cross-links in Escherichia coli.	J Bacteriol.	2009	191(18)	5657-68	19617358
Information	Barley	Sato K, Shin-I T, Seki M, Shinozaki K, Yoshida H, Takeda K, Yamazaki Y, Conte M, Kohara Y.	Development of 5006 full-length CDNAs in barley: a tool for accessing cereal genomics resources.	DNA Res..	2009	16(2)	81-9	19150987
Information	Barley	Schulte D, Close TJ, Graner A, Langridge P, Matsumoto T, Muehlbauer G, Sato K, Schulman AH, Waugh R, Wise RP, Stein N.	The international barley sequencing consortium--at the threshold of efficient access to the barley genome.	Plant Physiol.	2009	149(1)	142-7	19126706
Information	nigfly	Schulz JG, David G, Hassan BA.	A novel method for tissue-specific RNAi rescue in Drosophila.	Nucleic Acids Res.	2009	37(13)	e93	19483100
Information	nbrp	Shinozaki K, Sakakibara H.	Omics and bioinformatics: an essential toolbox for systems analyses of plant functions beyond 2010.	Plant Cell Physiol.	2009	50(7)	1177-80	19596708
Information	C. elegans	Shteingauz A, Cohen E, Biala Y, Treinin M.	The BTB-MATH protein BATH-42 interacts with RIC-3 to regulate maturation of nicotinic acetylcholine receptors.	J Cell Sci..	2009	122(Pt 6)	807-12	19223395
Information	C. elegans	Sumino Yanase, Akira Onodera, Patricia Tedesco, Thomas E. Johnson, and Naoaki Ishii	SOD-1 Deletions in Caenorhabditis elegans Alter the Localization of Intracellular Reactive Oxygen Species and Show Molecular Compensation	J. Gerontol A Biol Sci Med Sci	2009	64A	530-539
Information	KOMUGI	Wojciechowski T, Gooding MJ, Ramsay L, Gregory PJ.	The effects of dwarfing genes on seedling root growth of wheat.	J Exp Bot..	2009	60(9)	2565-73	19439763
Information	Rice	Avraham S, Tung CW, Ilic K, Jaiswal P, Kellogg EA, McCouch S, Pujar A, Reiser L, Rhee SY, Sachs MM, Schaeffer M, Stein L, Stevens P, Vincent L, Zapata F, Ware D.	The Plant Ontology Database: a community resource for plant structure and developmental stages controlled vocabulary and annotations.	Nucleic Acids Res.	2008	36(Database issue)	D449-54	18194960
Information	E. coli str...	Doan N, Gettins PG.	alpha-Macroglobulins are present in some gram-negative bacteria: characterization of the alpha2-macroglobulin from Escherichia coli.	J Biol Chem.	2008	283(42)	28747-56	18697741
Information	Oryzabase	Galperin MY	The Molecular Biology Database Collection: 2008 update.	Nucleic Acids Res.	2008	36(Database issue)	D2-4	18025043
Information	Oryzabase	Gu XY, Turnipseed EB, Foley ME.	The qSD12 locus controls offspring tissue-imposed seed dormancy in rice.	Genetics.	2008	179(4)	2263-73	18711220
Information	PEC	Inoue A, Murata Y, Takahashi H, Tsuji N, Fujisaki S, Kato J.	Involvement of an essential gene, mviN, in murein synthesis in Escherichia coli.	J Bacteriol.	2008	190(21)	7298-301	18708495
Information	Medaka	Kanda S, Akazome Y, Matsunaga T, Yamamoto N, Yamada S, Tsukamura H, Maeda K, Oka Y.	Identification of KiSS-1 product kisspeptin and steroid-sensitive sexually dimorphic kisspeptin neurons in medaka (oryzias latipes).	Endocrinology..	2008	149(5)	2467-76	18202129
Information	Medaka	Kobayashi D, Takeda H.	Medaka genome project.	Brief Funct Genomic Proteomic..	2008	7(6)	415-26	18836205
Information	Wheat	Kobayashi F, Maeta E, Terashima A, Kawaura K, Ogihara Y, Takumi S.	Development of abiotic stress tolerance via bZIP-type transcription factor LIP19 in common wheat.	J Exp Bot..	2008	59(4)	891-905	18326864
Information	C.elegans	Kulkarni G, Li H, Wadsworth WG.	CLEC-38, a transmembrane protein with C-type lectin-like domains, negatively regulates UNC-40-mediated axon outgrowth and promotes presynaptic development in Caenorhabditis elegans.	J Neurosci.	2008	28(17)	4541-50	18434533
Information	Rice	Larmande P, Gay C, Lorieux M, Périn C, Bouniol M, Droc G, Sallaud C, Perez P, Barnola I, Biderre-Petit C, Martin J, Morel JB, Johnson AA, Bourgis F, Ghesquière A, Ruiz M, Courtois B, Guiderdoni E.	Oryza Tag Line, a phenotypic mutant database for the Genoplante rice insertion line library.	Nucleic Acids Res.	2008	36(Database issue)	D1022-7	17947330
Information	NBRP	Liolios K, Mavromatis K, Tavernarakis N, Kyrpides NC.	The Genomes On Line Database (GOLD) in 2007: status of genomic and metagenomic projects and their associated metadata.	Nucleic Acids Res.	2008	36(Database issue)	D475-9	17981842
Information	Lotus	Liu B, Kanazawa A, Matsumura H, Takahashi R, Harada K, Abe J.	Genetic redundancy in soybean photoresponses associated with duplication of the phytochrome A gene.	Genetics.	2008	180(2)	995-1007	18780733
Information	Rice	Mano S, Miwa T, Nishikawa S, Mimura T, Nishimura M.	The plant organelles database (PODB): a collection of visualized plant organelles and protocols for plant organelle research.	Nucleic Acids Res.	2008	36(Database issue)	D929-37	17932059
Information	C.elegans, ...	Miyata S, Begun J, Troemel ER, Ausubel FM.	DAF-16-dependent suppression of immunity during reproduction in Caenorhabditis elegans.	Genetics.	2008	178(2)	903-18	18245330
Information	PEC	Mizoguchi H, Sawano Y, Kato J, Mori H.	Superpositioning of deletions promotes growth of Escherichia coli with a reduced genome.	DNA Res..	2008	15(5)	277-84	18753290
Information	C.elegans	Patel DS, Garza-Garcia A, Nanji M, McElwee JJ, Ackerman D, Driscoll PC, Gems D.	Clustering of Genetically Defined Allele Classes in the Caenorhabditis elegans DAF-2 Insulin/IGF-1 Receptor.	Genetics.	2008	178(2)	931-46	18245374
Information	Drosophila	Savla U, Benes J, Zhang J, Jones RS.	Recruitment of Drosophila Polycomb-group proteins by Polycomblike, a component of a novel protein complex in larvae.	Development.	2008	135(5)	813-7	18216170
Information	PEC	Shi Q, Parks AR, Potter BD, Safir IJ, Luo Y, Forster BM, Peters JE.	DNA damage differentially activates regional chromosomal loci for Tn7 transposition in Escherichia coli.	Genetics.	2008	179(3)	1237-50	18562643
Information	PEC	Shimoda Y, Mitsui H, Kamimatsuse H, Minamisawa K, Nishiyama E, Ohtsubo Y, Nagata Y, Tsuda M, Shinpo S, Watanabe A, Kohara M, Yamada M, Nakamura Y, Tabata S, Sato S.	Construction of signature-tagged mutant library in Mesorhizobium loti as a powerful tool for functional genomics.	DNA Res..	2008	15(5)	297-308	18658183
Information	Oryzabase	Shulaev V, Korban SS, Sosinski B, Abbott AG, Aldwinckle HS, Folta KM, Iezzoni A, Main D, Arús P, Dandekar AM, Lewers K, Brown SK, Davis TM, Gardiner SE, Potter D, Veilleux RE.	Multiple models for Rosaceae genomics.	Plant Physiol.	2008	147(3)	985-1003	18487361
Information	Mouse	Takada T, Mita A, Maeno A, Sakai T, Shitara H, Kikkawa Y, Moriwaki K, Yonekawa H, Shiroishi T.	Mouse inter-subspecific consomic strains for genetic dissection of quantitative complex traits.	Genome Res..	2008	18(3)	500-8	18256237
Information	PEC	Yamazaki Y, Niki H, Kato J.	Profiling of Escherichia coli Chromosome database.	Methods Mol Biol..	2008	416()	385-9	18392982
Information	Lotus	Yuksel B, Memon AR.	Comparative phylogenetic analysis of small GTP-binding genes of model legume plants and assessment of their roles in root nodules.	J Exp Bot..	2008	59(14)	3831-44	18849296
Information	C.elegans	Antoshechkin I, Sternberg PW.	The versatile worm: genetic and genomic resources for Caenorhabditis elegans research.	Nat Rev Genet..	2007	8(7)	518-32	17549065

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RRC is the database of papers related to the NBRP resources. Please feed back on your papers published.