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Species Resource name RRC ID Author Title Journal Published Volume Pages Pubmed ID DOI
Rice, Yeast   Full length cDNA of rice W303-1A (NBRP ID:BY20134...   48040   Yamaki T, Otani M, Ono K, Mimura T, Oda K, Minamii T, Matsumoto S, Matsuo Y, Kawamukai M, Akihiro T.   Isolation and characterization of rice cesium transporter genes from a rice-transporter-enriched yeast expression library.   Physiol Plant   2017 -4 -4       28369958   10.1111/ppl.12569  
Rice   W0630   47927   Ishikawa R, Watabe T, Nishioka R, Thanh PT, Ishii T.   Identification of Quantitative Trait Loci Controlling Floral Morphology of Rice Using a Backcross Population between Common Cultivated Rice, Oryza sativa and Asian Wild Rice, O. rufipogon   American Journal of Plant Sciences   2017 -3 -20   8   734-744     10.4236/ajps.2017.84051  
Rice   W0630   47928   Ishikawa R, Nishimura A, Htun TM, Nishioka R, Oka Y, Tsujimura Y, Inoue C, Ishii T.   Estimation of loci involved in non-shattering of seeds in early rice domestication   Genetica   2017 -2 -25   145   201-207     10.1007/s10709-017-9958-x  
Rice     47329   Furuta T, Uehara K, Angeles-Shim RB, Shim J, Nagai K, Ashikari M, Takashi T.   Development of chromosome segment substitution lines harboring Oryza nivara genomic segments in Koshihikari and evaluation of yield-related traits.   Breed. Sci.   2017 -2 -7   66(5)   845-850   28163601   10.1270/jsbbs.16131  
Rice   C0508, W0120, W1625, W2199, W1588, W1413...   45516   Shenton M, Iwamoto C, Kurata N, Ikeo K.   Effect of Wild and Cultivated Rice Genotypes on Rhizosphere Bacterial Community Composition.   Rice (N Y)   2016 -12   9(1)   42   27557607   10.1186/s12284-016-0111-8  
Rice   CSSL   47288   Win KT, Yamagata Y, Doi K, Uyama K, Nagai Y, Toda Y, Kani T, Ashikari M, Yasui H, Yoshimura A.   A single base change explains the independent origin of and selection for the nonshattering gene in African rice domestication.   New Phytol.   2016 -11 -20   213(4)   1925-1935   27861933   10.1111/nph.14290  
Rice   W0106, W1943   47925   Toyomasu T, Miyamoto K, Shenton MR, Sakai A, Sugawara C, Horie K, Kawaide H, Hasegawa M, Chuba M, Mitsuhashi W, Yamane H, Kurata N, Okada K.   Characterization and evolutionary analysis of ent-kaurene synthase like genes from the wild rice species Oryza rufipogon.   Biochem. Biophys. Res. Commun.   2016 -10 -30   480(3)   402-408   27771250   10.1016/j.bbrc.2016.10.062  
Rice   O. glaberrima introgression lines (G-ILs)   47085   Ohmori Y, Sotta N & Fujiwara T.   Identification of introgression lines of Oryza glaberrima Steud. with high mineral content in grains   Soil Science and Plant Nutrition   2016 -10 -18   62   456-464     10.1080/00380768.2016.1204896  
Rice   Induced mutation lines   47236   Fukuda M, Kawagoe Y, Murakami T, Washida H, Sugino A, Nagamine A, Okita TW, Ogawa M, Kumamaru T.   The Dual Roles of the Golgi Transport 1 (GOT1B): RNA Localization to the Cortical Endoplasmic Reticulum and the Export of Proglutelin and α-Globulin from the Cortical ER to the Golgi.   Plant Cell Physiol.   2016 -8 -28   57(11)   2380-2391   27565205   10.1093/pcp/pcw154  
Rice   種子不稔系統(STER-NIG0009)   46724   Liu H, Nonomura KI.   A wide reprogramming of histone H3 modifications during male meiosis I in rice is dependent on the Argonaute protein MEL1.   J. Cell. Sci.   2016 -8 -16   129(19)   3553-3561   27521428   10.1242/jcs.184937  
Rice   GIL and O. glaberrima lines.   40099   Uehara K B, Wang D R, Furuta T, Minami A, Nagai K, Gamuyao R, Asano K, Shim R B A, Shimizu Y, Ayano M, Komeda N, Doi K, Miura K, Toda Y, Kinoshita T, Osuda S, Higashiyama T, Nomoto M, Tada Y, Shinohara H, Matsubayashi Y, Greenberg A, Wu J Z, Yasui H, Yoshimura A, Mori H, McCouch S R, Ashikari M.   Loss of function at RAE2, a previously unidentified EPFL, is required for awnlessness in cultivated Asian rice   Proc. Natl. Acad. Sci. U.S.A.   2016 -8 -9   vol.113・no.32   8969–8974   27466405   10.1073/pnas.1604849113  
Rice   W1943, W0106, W1588, W167, W1514, W2112...   36798   Miyamoto K, Fujita M, Shenton MR, Akashi S, Sugawara C, Sakai A, Horie K, Hasegawa M, Kawaide H, Mitsuhashi W, Nojiri H, Yamane H, Kurata N, Okada K, Toyomasu T.   Evolutionary trajectory of phytoalexin biosynthetic gene clusters in rice.   Plant J.   2016 -5 -1       27133567   10.1111/tpj.13200  
Rice   Oryzabase   36990   Xiao S, Shao M, Wang D, Li W, Liu F.   Identification and Evolution of FYVE Domain-Containing Proteins and Their Expression Patterns in Response to Abiotic Stresses in Rice   Plant Mol Biol Rep   2016 -4 -25         10.1007/s11105-016-0988-9  
Rice   W0630   47926   Ikemoto M, Ohyagi T, Thanh PT, Ishikawa R, Ishii T.   Evaluation of shooting and rooting ability from nodes and ratooning ability using backcross recombinant inbred lines between Oryza rufipogon and O. sativa   The Society of Crop Science and Breeding in Kinki, Japan   2016 -4 -21   61号   13-17      
Rice   AIS86, IAS6, IAS27   36735   Kubo T, Yoshimura A, Kurata N.   Pollen Killer Gene S35 Function Requires Interaction with an Activator That Maps Close to S24, Another Pollen Killer Gene in Rice.   G3 (Bethesda)   2016   6(5)   1459-68   27172610   10.1534/g3.116.027573  
Rice   T65   35965   Kurokawa Y, Noda T, Yamagata Y, Angeles-Shim R, Sunohara H, Uehara K, Furuta T, Nagai K, Jena KK, Yasui H, Yoshimura A, Ashikari M, Doi K.   Construction of a versatile SNP array for pyramiding useful genes of rice   Plant Science   2016 -1   242   131-139     10.1016  
Rice, Information   Oryzabase   36322   Ohyanagi H, Ebata T, Huang X, Gong H, Fujita M, Mochizuki T, Toyoda A, Fujiyama A, Kaminuma E, Nakamura Y, Feng Q, Wang ZX, Han B, Kurata N.   OryzaGenome: Genome Diversity Database of Wild Oryza Species.   Plant Cell Physiol.   2016 -1   57(1)   e1   26578696   10.1093/pcp/pcv171  
Rice   Oryzabase   36807   Ohyanagi H, Obayashi T, Yano K.   Editorial: Plant and Cell Physiology's 2016 Online Database Issue.   Plant Cell Physiol.   2016 -1   57(1)   1-3   26801748   10.1093/pcp/pcv205  
Rice   O. rufipogon (W0593, W1236, W1294, W1954)   35981   Kobayashi H.   A study of the relationship between wild rice (Oryza rufipogon) and japonica rice varieties (Oryza sativa L.)   The Bulletin of Okayama University of Science   2015 -12 -28   51A   53-56      
Rice   W1169W1171W1183W1185W1187W1189...   36025   Yin H, Akimoto M, Kaewcheenchai R, Sotowa M, Ishii T, Ishikawa R.   Inconsistent diversities between nuclear and plastid genomes of AA genome species in the genus Oryza.   Genes Genet. Syst.   2015 -12 -18       26687860   10.1266/ggs.14-00063  
Rice   W0054, W0106   35786   Furuta T, Komeda N, Asano K, Uehara K, Gamuyao R, Angeles-Shim RB, Nagai K, Doi K, Wang DR, Yasui H, Yoshimura A, Wu J, McCouch SR, Ashikari M.   Convergent Loss of Awn in Two Cultivated Rice Species Oryza sativa and Oryza glaberrima Is Caused by Mutations in Different Loci.   G3 (Bethesda)   2015 -11   5(11)   2267-74   26338659   10.1534/g3.115.020834  
Rice   W1724 W1945 W1236 W0120 W2103 W1230...   35124   Kubo T, Takashi T, Ashikari M, Yoshimura A, Kurata N.   Two tightly linked genes at the hsa1 locus cause both F1 and F2 hybrid sterility in rice.   Mol Plant   2015 -10 -5   9   221-232   26455463   10.1016/j.molp.2015.09.014  
Rice     35122   Miyazaki S, Sato Y, Asano T, Nagamura Y, Nonomura K.   Rice MEL2, the RNA recognition motif (RRM) protein, binds in vitro to meiosis-expressed genes containing U-rich RNA consensus sequences in the 3'-UTR.   Plant Mol. Biol.   2015 -10   89(3)   293-307   26319516   10.1007/s11103-015-0369-z  
Rice   野生イネ Rank1   34810   Taguchi-Shiobara F, Ota T, Ebana K, Ookawa T, Yamasaki M, Tanabata T, Yamanouchi U, Wu J, Ono N, Nonoue Y, Nagata K, Fukuoka S, Hirabayashi H, Yamamoto T, Yano M.   Natural Variation in the Flag Leaf Morphology of Rice Due to a Mutation of the NARROW LEAF 1 Gene in Oryza sativa L.   Genetics   2015 -10   201(2)   795-808   26275424   10.1534/genetics.115.181040  
Rice   Induced mutation lines   47234   Wen L, Fukuda M, Sunada M, Ishino S, Ishino Y, Okita TW, Ogawa M, Ueda T, Kumamaru T.   Guanine nucleotide exchange factor 2 for Rab5 proteins coordinated with GLUP6/GEF regulates the intracellular transport of the proglutelin from the Golgi apparatus to the protein storage vacuole in rice endosperm.   J. Exp. Bot.   2015 -10   66(20)   6137-47   26136263   10.1093/jxb/erv325  
Rice   W0106, W0120, W0137, W1551, W1681,W0049...   35120   Niihama M, Mochizuki M, Kurata N, Nonomura K.   PCR-based INDEL markers co-dominant between Oryza sativa, japonica cultivars and closely-related wild Oryza species.   Breed Sci.   2015 -9   65(4)   357-61   26366120   10.1270/jsbbs.65.357  
Rice, Information   Oryzabase   34827   Katsunori Tanaka, Nobuhiko Kamijo, Hiroaki Tabuchi, Kuniko Hanamori, Ryuji Matsuda, Junko Suginomori, Yo-Ichiro Sato, Tetsuro Udatsu, Ryuji Ishikawa   Morphological and molecular genetics of ancient remains and modern rice (Oryza sativa) confirm diversity in ancient Japan   Genetic Resources and Crop Evolution   2015 -7 -11     1-18     10.1007/s10722-015-0262-2  
Rice   Fn278, FL495, Fn123, Fn270   35783   松下景、飯田修一、春原嘉弘、出田収、前田英郎、笹原英樹、長岡一朗、高橋能彦、渡邊肇   葉色が淡くβ-カロテン含量が低いイネの突然変異系統の作出   日本作物学会紀事   2015 -7 -5   84(3)   279-284     10.1626/jcs.84.279  
Rice   野生イネ:Core Rank1&Rank2   35702   Fujino K, Obara M, Ikegaya T, Tamura K.   Genetic shift in local rice populations during rice breeding programs in the northern limit of rice cultivation in the world   Theor. Appl. Genet.   2015 -5 -29   128   1739-1746     10.1007/s00122-015-2543-8  
Rice   Induced Mutation Lines   33532   Yan J, Aboshi T, Teraishi M, Stricklerb SR, Spindel JE, Tung C-W, Takata R, Matsumoto F, Maesaka Y, McCouch SR, Okumoto Y, Mori N, Jandera G.   The Tyrosine Aminomutase TAM1 Is Required for β-Tyrosine Biosynthesis in Rice.   Plant Cell.   2015 -4 -21   27・4   1265-78     10.1105/tpc.15.00058  
Rice   W0106, W1921, W1943   33101   Shenton MR, Ohyanagi H, Wang ZX, Toyoda A, Fujiyama A, Nagata T, Feng Q, Han B, Kurata N.   Rapid turnover of antimicrobial-type cysteine-rich protein genes in closely related Oryza genomes.   Mol. Genet. Genomics   2015 -4 -5       25842177   10.1007/s00438-015-1028-4  
Rice   Induced mutation lines   47235   Tanaka W, Ohmori Y, Ushijima T, Matsusaka H, Matsushita T, Kumamaru T, Kawano S, Hirano HY.   Axillary Meristem Formation in Rice Requires the WUSCHEL Ortholog TILLERS ABSENT1.   Plant Cell   2015 -4   27(4)   1173-84   25841039   10.1105/tpc.15.00074  
Rice     35123   Copetti D, Zhang J, El Baidouri M, Gao D, Wang J, Barghini E, Cossu RM, Angelova A, Maldonado L CE, Roffler S, Ohyanagi H, Wicker T, Fan C, Zuccolo A, Chen M, Costa de Oliveira A, Han B, Henry R, Hsing YI, Kurata N, Wang W, Jackson SA, Panaud O, Wing RA.   RiTE database: a resource database for genus-wide rice genomics and evolutionary biology.   BMC Genomics   2015   16   538   26194356   10.1186/s12864-015-1762-3  
Rice   W0630   36059   Inoue C, Htun TM, Inoue K, Ikeda K, Ishii T, Ishikawa R.   Inhibition of abscission layer formation by an interaction of two seed-shattering loci, sh4 and qSH3, in rice.   Genes Genet. Syst.   2015   90(1)   1-9   26119661   10.1266/ggs.90.1  
Rice, Information   Oryzabase   34826   Yu Sugiyama, Hiroyasu Michiyama, Tatsuya Hirano   Involvement of α-Amylase Genes in Starch Degradation in Rice Leaf Sheaths at the Post-Heading Stage   Plant Production Science   2015   18-3   277-283     doi.org/10.1626/pps.18.277  
Rice, Information   Oryzabase   34825   Zhang F, Huang LY, Zhang F, Ali J, Cruz CV, Zhuo DL, Du ZL, Li ZK, Zhou YL.   Comparative transcriptome profiling of a rice line carrying Xa39 and its parents triggered by Xanthomonas oryzae pv. oryzae provides novel insights into the broad-spectrum hypersensitive response.   BMC Genomics   2015   16   111   25765449   10.1186/s12864-015-1329-3  
Rice   野生イネ(O.rufipogon)30 Acc.   31823   Chen S, Liu R, Koyanagi KO, Kishima Y.   Rice genomes recorded ancient pararetrovirus activities: Virus genealogy and multiple origins of endogenization during rice speciation.   Virology   2014 -12   471-473   141-52   25461539   10.1016/j.virol.2014.09.014  
Rice   Glu-IL   47297   Sakata M, Yamagata Y, Doi K, Yoshimura A.   Two linked genes on rice chromosome 2 for F1 pollen sterility in a hybrid between Oryza sativa and O. glumaepatula.   Breed. Sci.   2014 -12   64(4)   309-20   25914585   10.1270/jsbbs.64.309  
Rice   C9285   30813   Ayano M, Kani T, Kojima M, Sakakibara H, Kitaoka T, Kuroha T, Angeles-Shim RB, Kitano H, Nagai K, Ashikari M.   Gibberellin biosynthesis and signal transduction is essential for internode elongation in deepwater rice.   Plant Cell Environ.   2014 -10   37(10)   2313-24   24891164   10.1111/pce.12377  
Rice   W0630   31824   Htun TM, Inoue C, Chhourn O, Ishii T, Ishikawa R.   Effect of quantitative trait loci for seed shattering on abscission layer formation in Asian wild rice Oryza rufipogon.   Breed Sci.   2014 -9   64(3)   199-205   25320554   10.1270/jsbbs.64.199  
Rice   Induced mutation lines   36153   Tsuda K, Kurata N, Ohyanagi H, Hake S.   Genome-wide study of KNOX regulatory network reveals brassinosteroid catabolic genes important for shoot meristem function in rice.   Plant Cell   2014 -9   26(9)   3488-500   25194027   10.1105/tpc.114.129122  
Rice   W0630, W0720, W1169, W1627, W0008, W1514   31826   Mitani-Ueno N, Ogai H, Yamaji N, Ma JF.   Physiological and molecular characterization of Si uptake in wild rice species.   Physiol Plant   2014 -7   151(3)   200-7   24320720   10.1111/ppl.12125  
Rice     35121   Komiya R, Ohyanagi H, Niihama M, Watanabe T, Nakano M, Kurata N, Nonomura K.   Rice germline-specific Argonaute MEL1 protein binds to phasiRNAs generated from more than 700 lincRNAs.   Plant J.   2014 -5   78(3)   385-97   24635777   10.1111/tpj.12483  
Rice   C9285   30812   Nagai K, Kondo Y, Kitaoka T, Noda T, Kuroha T, Angeles-Shim RB, Yasui H, Yoshimura A, Ashikari M.   QTL analysis of internode elongation in response to gibberellin in deepwater rice.   AoB Plants   2014   6     24946943   10.1093/aobpla/plu028  
Rice   Fn188   36069   Fujita D, Trijatmiko KR, Tagle AG, Sapasap MV, Koide Y, Sasaki K, Tsakirpaloglou N, Gannaban RB, Nishimura T, Yanagihara S, Fukuta Y, Koshiba T, Slamet-Loedin IH, Ishimaru T, Kobayashi N.   NAL1 allele from a rice landrace greatly increases yield in modern indica cultivars.   Proc. Natl. Acad. Sci. U.S.A.   2013 -12 -17   110(51)   20431-6   24297875   10.1073/pnas.1310790110  
Rice   AIS, IAS   35785   Kubo T.   Genetic mechanisms of postzygotic reproductive isolation: An epistatic network in rice.   Breed Sci.   2013 -12   63(4)   359-66   24399907   10.1270/jsbbs.63.359  
Rice   W1057,W1577,W1263,W0008   27764   Yi C, Zhang W, Dai X, Li X, Gong Z, Zhou Y, Liang G, Gu M.   Identification and diversity of functional centromere satellites in the wild rice species Oryza brachyantha.   Chromosome Res.   2013 -12   21(8)   725-37   24077888   10.1007/s10577-013-9374-8  
Rice   W0001 W0002 W0003 W0005 W0008 W0016...   28137   Yamaki S, Ohyanagi H, Yamasaki M, Eiguchi M, Miyabayashi T, Kubo T, Kurata N, Nonomura K.   Development of INDEL markers to discriminate all genome types rapidly in the genus Oryza.   Breed Sci.   2013 -9   63(3)   246-54   24273419   10.1270/jsbbs.63.246  
Rice   W1514,W1024,W1213,W1331   28168   Nosaka M, Ishiwata A, Shimizu-Sato S, Ono A, Ishimoto K, Noda Y, Sato Y.   The copy number of rice CACTA DNA transposons carrying MIR820 does not correlate with MIR820 expression.   Plant Signal Behav   2013 -8   8(8)     23733074   10.4161/psb.25169  
Rice   W0106 W0120 W1294 W1866 W1921 W2003...   28169   Ishimaru K, Hirotsu N, Madoka Y, Murakami N, Hara N, Onodera H, Kashiwagi T, Ujiie K, Shimizu B, Onishi A, Miyagawa H, Katoh E.   Loss of function of the IAA-glucose hydrolase gene TGW6 enhances rice grain weight and increases yield.   Nat. Genet.   2013 -6   45(6)   707-11   23583977   10.1038/ng.2612  
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Species Resource Name Application No Publication No Title of the invention Inventor's name Applicant External collaborator Filing Date Publication Date
Rice  W1109, W1125  PCT/JP2013/066528  WO2014027502 A1  イネrt型細胞質雄性不稔性原因遺伝子およびその利用  鳥山欽哉、風間智彦、本村恵二、五十嵐圭介  国立大学法人東北大学、国立大学法人琉球大学    2013-06-10  2014-02-20 
Rice  Induced Mutation lines  特願2008-290180  特開2010-115141  プロラミンの集積に関与する遺伝子及びその利用  熊丸敏博、 牛島智一、 佐藤光、 川越靖  国立大学法人九州大学、独立行政法人農業生物資源研究所    2008-11-12  2010-5-27 
Rice  Induced Mutation lines  特願2008-058057  特開2009-213370  パン類の製造に適した米粉組成物およびその利用  川越 靖、恩田 弥生、高星 千恵美、熊丸 敏博、佐藤 光  独立行政法人農業生物資源研究所、国立大学法人九州大学    2008-03-07  2009-09-24 
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