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Species Resource name RRC ID Author Title Journal Published Volume Pages Pubmed ID DOI
Prokaryotes E. coli   ME9796, ME9797, ME9798, ME9799, ME9800...   48547   Kawazura T, Matsumoto K, Kojima K, Kato F, Kanai T, Niki H, Shiomi D.   Exclusion of assembled MreB by anionic phospholipids at cell poles confers cell polarity for bidirectional growth.   Mol. Microbiol.   2017 -2 -7   104(3)   472-486   28164388   10.1111/mmi.13639  
Prokaryotes E. coli   ME9780   36734   Ishihama A, Shimada T, Yamazaki Y.   Transcription profile of Escherichia coli: genomic SELEX search for regulatory targets of transcription factors.   Nucleic Acids Res.   2016 -2 -5   44(5)   2058-74   26843427   10.1093/nar/gkw051  
Prokaryotes E. coli   ME9062(BW25113), JW0145-KC(mrcB), JW3359-KC...   34745   Vischer NO, Verheul J, Postma M, van den Berg van Saparoea B, Galli E, Natale P, Gerdes K, Luirink J, Vollmer W, Vicente M, den Blaauwen T.   Cell age dependent concentration of Escherichia coli divisome proteins analyzed with ImageJ and ObjectJ.   Front Microbiol   2015 -7 -1   6   586   26124755   10.3389/fmicb.2015.00586  
Prokaryotes E. coli   ASKAクローン(+)、Keioコレクション   32840   Adachi S, Murakawa Y, Hiraga S.   Dynamic nature of SecA and its associated proteins in Escherichia coli.   Front Microbiol   2015 -2 -26   6   75   25713567   10.3389/fmicb.2015.00075  
Prokaryotes E. coli   ME7986(MG1655), ME9062(BW25113), JW1908-KC,...   35668   Mizuno K, Furukawa S, Usui Y, Ishiba M, Ogihara H, Morinaga Y.   Fimbriae and lipopolysaccharides are necessary for co-aggregation between Lactobacilli and Escherichia coli.   Biosci. Biotechnol. Biochem.   2014 -9 -12   78(9)   1626-8   25209514   10.1080/09168451.2014.921562  
Prokaryotes E. coli   K-12, W3110   35667   Takahashi Y, Shintani M, Takase N, Kazo Y, Kawamura F, Hara H, Nishida H, Okada K, Yamane H, Nojiri H.   Modulation of primary cell function of host Pseudomonas bacteria by the conjugative plasmid pCAR1.   Environ. Microbiol.   2014 -6 -4   17(1)   134-55   24889869   10.1111/1462-2920.12515  
Prokaryotes E. coli   pRS415   35666   Feeney M, Murphy K, Lopilato J.   Designing PCR primers painlessly.   J Microbiol Biol Educ   2014 -5 -20   15(1)   28-9   24839513   10.1128/jmbe.v15i1.634  
Prokaryotes E. coli   gpt::kan(JW0228)?   35643   Itsko M, Schaaper RM.   dGTP starvation in Escherichia coli provides new insights into the thymineless-death phenomenon.   PLoS Genet.   2014 -5 -9   10(5)   e1004310   24810600   10.1371/journal.pgen.1004310  
Prokaryotes E. coli   NA   35649   Nguyen MH, Ojima Y, Sakka M, Sakka K, Taya M.   Probing of exopolysaccharides with green fluorescence protein-labeled carbohydrate-binding module in Escherichia coli biofilms and flocs induced by bcsB overexpression.   J. Biosci. Bioeng.   2014 -4 -22   118(4)   400-5   24746734   10.1016/j.jbiosc.2014.03.005  
Prokaryotes E. coli   ASKA library   35634   Aoki W, Saito M, Manabe R, Mori H, Yamaguchi Y, Tamiya E.   Integrating reductive and synthetic approaches in biology using man-made cell-like compartments.   Sci Rep   2014 -4 -18   4   4722   24740007   10.1038/srep04722  
Prokaryotes E. coli   JW0120-KC, JW1666-KC, JW1839-KC, JW1840-K...   35655   Waligora EA, Fisher CR, Hanovice NJ, Rodou A, Wyckoff EE, Payne SM.   Role of intracellular carbon metabolism pathways in Shigella flexneri virulence.   Infect. Immun.   2014 -4 -16   82(7)   2746-55   24733092   10.1128/IAI.01575-13  
Prokaryotes E. coli   JE6886(G1), JE6887(G2), JE5544(G3), JE597...   35657   Winkler JD, Garcia C, Olson M, Callaway E, Kao KC.   Evolved osmotolerant Escherichia coli mutants frequently exhibit defective N-acetylglucosamine catabolism and point mutations in cell shape-regulating protein MreB.   Appl. Environ. Microbiol.   2014 -4 -15   80(12)   3729-40   24727267   10.1128/AEM.00499-14  
Prokaryotes E. coli   JW3596-KC, JW0175-KC   35644   Klein G, Kobylak N, Lindner B, Stupak A, Raina S.   Assembly of lipopolysaccharide in Escherichia coli requires the essential LapB heat shock protein.   J. Biol. Chem.   2014 -4 -12   289(21)   14829-53   24722986   10.1074/jbc.M113.539494  
Prokaryotes E. coli   ME9062(BW25113), Keio   35662   Paul S, Alegre KO, Holdsworth SR, Rice M, Brown JA, McVeigh P, Kelly SM, Law CJ.   A single-component multidrug transporter of the major facilitator superfamily is part of a network that protects Escherichia coli from bile salt stress.   Mol. Microbiol.   2014 -4 -2   92(4)   872-84   24684269   10.1111/mmi.12597  
Prokaryotes E. coli   ME9062(BW25113)?, ME9042(BL21(DE3))?, ME5303...   35664   Arenas FA, Leal CA, Pinto CA, Arenas-Salinas MA, Morales WA, Cornejo FA, Díaz-Vásquez WA, Vásquez CC.   On the mechanism underlying tellurite reduction by Aeromonas caviae ST dihydrolipoamide dehydrogenase.   Biochimie   2014 -4 -1   102   174-82   24680738   10.1016/j.biochi.2014.03.008  
Prokaryotes E. coli   ME9062(BW25113), JW0531-KC, JW0731-KC, JW...   35635   Beketskaia MS, Bay DC, Turner RJ.   Outer membrane protein OmpW participates with small multidrug resistance protein member EmrE in quaternary cationic compound efflux.   J. Bacteriol.   2014 -3 -19   196(10)   1908-14   24633876   10.1128/JB.01483-14  
Prokaryotes E. coli   ASKA clones?   35651   Silva I, Real LJ, Ward MS, Xu HH.   A disk-diffusion-based target identification platform for antibacterials (TIPA): an inducible assay for profiling MOAs of antibacterial compounds.   Appl. Microbiol. Biotechnol.   2014 -3 -14   98(12)   5551-66   24622888   10.1007/s00253-014-5623-9  
Prokaryotes E. coli   ME9062(BW25113), Keio, ASKA   35661   Tran KT, Maeda T, Wood TK.   Metabolic engineering of Escherichia coli to enhance hydrogen production from glycerol.   Appl. Microbiol. Biotechnol.   2014 -3 -13   98(10)   4757-70   24615384   10.1007/s00253-014-5600-3  
Prokaryotes E. coli   KT7600?, JD25278   35632   Aiso T, Kamiya S, Yonezawa H, Gamou S.   Overexpression of an antisense RNA, ArrS, increases the acid resistance of Escherichia coli.   Microbiology (Reading, Engl.)   2014 -3 -7   160(Pt 5)   954-61   24600026   10.1099/mic.0.075994-0  
Prokaryotes E. coli   JW3201-KC   35647   Marteyn BS, Karimova G, Fenton AK, Gazi AD, West N, Touqui L, Prevost MC, Betton JM, Poyraz O, Ladant D, Gerdes K, Sansonetti PJ, Tang CM.   ZapE is a novel cell division protein interacting with FtsZ and modulating the Z-ring dynamics.   MBio   2014 -3 -7   5(2)   e00022-14   24595368   10.1128/mBio.00022-14  
Prokaryotes E. coli   NA   35652   Soma Y, Tsuruno K, Wada M, Yokota A, Hanai T.   Metabolic flux redirection from a central metabolic pathway toward a synthetic pathway using a metabolic toggle switch.   Metab. Eng.   2014 -3 -1   23   175-84   24576819   10.1016/j.ymben.2014.02.008  
Prokaryotes E. coli   ME7986(MG1655 (F−, λ−, ilvG-, rfb-50, rph-1;...   35660   ShibataY., Ugumori,C., Takahashi,A., Sekoguchi,A., Maeda,S.   Survey of lysogenic phages in the 72 strains of Escherichia coli collection of reference (ECOR) and identification of a phage derived from the ECOR52 strain.   American Journal of Bioscience   2014 -2 -28   2(2)   32-37     10.11648/j.ajbio.20140202.12  
Prokaryotes E. coli   NA   35637   Watanabe R, Doukyu N.   Improvement of organic solvent tolerance by disruption of the lon gene in Escherichia coli.   J. Biosci. Bioeng.   2014 -2 -28   118(2)   139-44   24571965   10.1016/j.jbiosc.2014.01.011  
Prokaryotes E. coli   NA   35638   Fung AW, Ebhardt HA, Krishnakumar KS, Moore J, Xu Z, Strazewski P, Fahlman RP.   Probing the leucyl/phenylalanyl tRNA protein transferase active site with tRNA substrate analogues.   Protein Pept. Lett.   2014 -2 -14   21(7)   603-14   24521222    
Prokaryotes E. coli   ME9062(BW25113), JW2279-KC, JW1095-KC   35665   Díaz-Vásquez WA, Abarca-Lagunas MJ, Arenas FA, Pinto CA, Cornejo FA, Wansapura PT, Appuhamillage GA, Chasteen TG, Vásquez CC.   Tellurite reduction by Escherichia coli NDH-II dehydrogenase results in superoxide production in membranes of toxicant-exposed cells.   Biometals   2014 -2 -1   27(2)   237-46   24481550   10.1007/s10534-013-9701-8  
Prokaryotes E. coli   JW3794-KC   35636   Carpenter CD, Cooley BJ, Needham BD, Fisher CR, Trent MS, Gordon V, Payne SM.   The Vps/VacJ ABC transporter is required for intercellular spread of Shigella flexneri.   Infect. Immun.   2014 -1 -31   82(2)   660-9   24478081   10.1128/IAI.01057-13  
Prokaryotes E. coli   Keio   35650   Rasmussen JA, Post DM, Gibson BW, Lindemann SR, Apicella MA, Meyerholz DK, Jones BD.   Francisella tularensis Schu S4 lipopolysaccharide core sugar and O-antigen mutants are attenuated in a mouse model of tularemia.   Infect. Immun.   2014 -1 -24   82(4)   1523-39   24452684   10.1128/IAI.01640-13  
Prokaryotes E. coli   ME9062(BW25113), Keio   35641   Hidese R, Mihara H, Kurihara T, Esaki N.   Global identification of genes affecting iron-sulfur cluster biogenesis and iron homeostasis.   J. Bacteriol.   2014 -1 -15   196(6)   1238-49   24415728   10.1128/JB.01160-13  
Prokaryotes E. coli   ME9062(BW25113), JW0157-KC, JW0052-KC   35640   Ge X, Wang R, Ma J, Liu Y, Ezemaduka AN, Chen PR, Fu X, Chang Z.   DegP primarily functions as a protease for the biogenesis of β-barrel outer membrane proteins in the Gram-negative bacterium Escherichia coli.   FEBS J.   2014 -1 -1   281(4)   1226-40   24373465   10.1111/febs.12701  
Prokaryotes E. coli   ?   35645   Lee,P., Raj,SM., Zhou,S., Ashok,S., Edwardraja,S., Park,S.   3-Hydroxyisobutyrate Dehydrogenase-I from Pseudomonas denitrificans ATCC 13867 Degrades 3-Hydroxypropionic Acid.   Biotechnology and Bioprocess Engineering   2014   19(1)   1-7     10.1007/s12257-013-0487-x  
Prokaryotes E. coli   ?   35653   Tripathi A, Dewan PC, Siddique SA, Varadarajan R.   MazF-induced growth inhibition and persister generation in Escherichia coli.   J. Biol. Chem.   2014 -1 -1   289(7)   4191-205   24375411   10.1074/jbc.M113.510511  
Prokaryotes E. coli   ME9062(BW25113)?   35631   Reinoso CA, Appanna VD, Vásquez CC.   α -Ketoglutarate accumulation is not dependent on isocitrate dehydrogenase activity during tellurite detoxification in Escherichia coli.   Biomed Res Int   2013 -12 -29   2013   784190   24371831   10.1155/2013/784190  
Prokaryotes E. coli   JW1375 (ASKA)?   35659   Moynihan MM, Murkin AS.   Cysteine is the general base that serves in catalysis by isocitrate lyase and in mechanism-based inhibition by 3-nitropropionate.   Biochemistry   2013 -12 -21   53(1)   178-87   24354272   10.1021/bi401432t  
DNA material, Prokaryotes E. coli   JW0187, GNP Clone, IRAK027I21 (HGX011013)   28464   Kogure H, Handa Y, Nagata M, Kanai N, Güntert P, Kubota K, Nameki N.   Identification of residues required for stalled-ribosome rescue in the codon-independent release factor YaeJ.   Nucleic Acids Res.   2013 -12 -11   42(5)   3152-63   24322300   10.1093/nar/gkt1280  
Prokaryotes E. coli   ME8927(CAG18570)   35627   Ito K, Hamasaki K, Kayamori A, Nguyen PA, Amagai K, Wachi M.   A secondary structure in the 5' untranslated region of adhE mRNA required for RNase G-dependent regulation.   Biosci. Biotechnol. Biochem.   2013 -12 -10   77(12)   2473-9   24317071   10.1271/bbb.130618  
Prokaryotes E. coli   ME5479(MH1), JW0204-KC, JW0178-KC, JW2669...   35648   Naka K, Koga M, Yonesaki T, Otsuka Y.   RNase HI stimulates the activity of RnlA toxin in Escherichia coli.   Mol. Microbiol.   2013 -12 -7   91(3)   596-605   24308852   10.1111/mmi.12479  
Prokaryotes E. coli   JW0715, ASKA   35624   Patel H, Shim DJ, Farinas ET, Jordan F.   Investigation of the donor and acceptor range for chiral carboligation catalyzed by the E1 component of the 2-oxoglutarate dehydrogenase complex.   J. Mol. Catal., B Enzym.   2013 -11 -28   98     24277992   10.1016/j.molcatb.2013.09.010  
Prokaryotes E. coli   ME9062(BW25113), JW0052-KC, JW3309-KC   35639   Ge X, Lyu ZX, Liu Y, Wang R, Zhao XS, Fu X, Chang Z.   Identification of FkpA as a key quality control factor for the biogenesis of outer membrane proteins under heat shock conditions.   J. Bacteriol.   2013 -11 -26   196(3)   672-80   24272780   10.1128/JB.01069-13  
Prokaryotes E. coli   ME9062(BW25113), JW1272-KC, JW0175(ASKA-fa...   35646   Mahalakshmi S, Sunayana MR, SaiSree L, Reddy M.   yciM is an essential gene required for regulation of lipopolysaccharide synthesis in Escherichia coli.   Mol. Microbiol.   2013 -11 -26   91(1)   145-57   24266962   10.1111/mmi.12452  
Prokaryotes E. coli   pJP5608, pWM91   35658   Yamamoto S, Mitobe J, Ishikawa T, Wai SN, Ohnishi M, Watanabe H, Izumiya H.   Regulation of natural competence by the orphan two-component system sensor kinase ChiS involves a non-canonical transmembrane regulator in Vibrio cholerae.   Mol. Microbiol.   2013 -11 -19   91(2)   326-47   24236404   10.1111/mmi.12462  
Prokaryotes E. coli   ME5305(AG1), ASKA library   35654   Wagner A, Zarecki R, Reshef L, Gochev C, Sorek R, Gophna U, Ruppin E.   Computational evaluation of cellular metabolic costs successfully predicts genes whose expression is deleterious.   Proc. Natl. Acad. Sci. U.S.A.   2013 -11 -8   110(47)   19166-71   24198337   10.1073/pnas.1312361110  
Prokaryotes E. coli   ME9062(BW25113), JW5248-KC, JW0119-KC, JW...   35663   Hao Z, Lou H, Zhu R, Zhu J, Zhang D, Zhao BS, Zeng S, Chen X, Chan J, He C, Chen PR.   The multiple antibiotic resistance regulator MarR is a copper sensor in Escherichia coli.   Nat. Chem. Biol.   2013 -11 -5   10(1)   21-8   24185215   10.1038/nchembio.1380  
Prokaryotes E. coli   JW4025-KC, JW5636-KC, JW5467-KC   35626   Kozmin SG, Stepchenkova EI, Chow SC, Schaaper RM.   A critical role for the putative NCS2 nucleobase permease YjcD in the sensitivity of Escherichia coli to cytotoxic and mutagenic purine analogs.   MBio   2013 -10 -31   4(6)   e00661-13   24169576   10.1128/mBio.00661-13  
Prokaryotes E. coli   ?   35601   Wei Y, Gao ZQ, Otsuka Y, Naka K, Yonesaki T, Zhang H, Dong YH.   Structure-function studies of Escherichia coli RnlA reveal a novel toxin structure involved in bacteriophage resistance.   Mol. Microbiol.   2013 -10 -12   90(5)   956-65   24112600   10.1111/mmi.12409  
Prokaryotes E. coli   JW1806-KC, JW2154-KC, JW1375-KC, JW3580-K...   35602   Pieper R, Fisher CR, Suh MJ, Huang ST, Parmar P, Payne SM.   Analysis of the proteome of intracellular Shigella flexneri reveals pathways important for intracellular growth.   Infect. Immun.   2013 -10 -9   81(12)   4635-48   24101689   10.1128/IAI.00975-13  
Prokaryotes E. coli   JW1670-KC   35622   Gisselberg JE, Dellibovi-Ragheb TA, Matthews KA, Bosch G, Prigge ST.   The suf iron-sulfur cluster synthesis pathway is required for apicoplast maintenance in malaria parasites.   PLoS Pathog.   2013 -10 -3   9(9)   e1003655   24086138   10.1371/journal.ppat.1003655  
Prokaryotes E. coli   ASKA library   35628   Fujii S, Matsuura T, Sunami T, Kazuta Y, Yomo T.   In vitro evolution of α-hemolysin using a liposome display.   Proc. Natl. Acad. Sci. U.S.A.   2013 -10 -2   110(42)   16796-801   24082135   10.1073/pnas.1314585110  
Prokaryotes E. coli, Yeast   ME8568(HB101), CV-63(SY327(Lambdapir)), BYP7574...   35597   Moriguchi K, Yamamoto S, Tanaka K, Kurata N, Suzuki K.   Trans-kingdom horizontal DNA transfer from bacteria to yeast is highly plastic due to natural polymorphisms in auxiliary nonessential recipient genes.   PLoS ONE   2013 -9 -24   8(9)   e74590   24058593   10.1371/journal.pone.0074590  
Prokaryotes E. coli   NA   35621   Hiroe A, Hyakutake M, Thomson NM, Sivaniah E, Tsuge T.   Endogenous ethanol affects biopolyester molecular weight in recombinant Escherichia coli.   ACS Chem. Biol.   2013 -9 -18   8(11)   2568-76   24041146   10.1021/cb400465p  
Prokaryotes E. coli   ME9062(BW25113(Keio, ASKA)), JW1559(Keio, ASKA),...   35606   Mohd Yusoff MZ, Hashiguchi Y, Maeda T, Wood TK.   Four products from Escherichia coli pseudogenes increase hydrogen production.   Biochem. Biophys. Res. Commun.   2013 -9 -13   439(4)   576-9   24025676   10.1016/j.bbrc.2013.09.016  
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