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Species Resource name RRC ID Author Title Journal Published Volume Pages Pubmed ID DOI
C.intestinalis / (O.japonicus)   Wild C. int Tg[MiCiZipCiFkhK]1 Tg[MiCiPC2K]3...   50313   Sasakura Y, Hozumi A.   Formation of adult organs through metamorphosis in ascidians.   Wiley Interdiscip Rev Dev Biol   2017 -11 -7   7(2)     29105358   10.1002/wdev.304  
C.intestinalis / (O.japonicus)   Wild C. int   49542   Hu H, Uesaka M, Guo S, Shimai K, Lu TM, Li F, Fujimoto S, Ishikawa M, Liu S, Sasagawa Y, Zhang G, Kuratani S, Yu JK, Kusakabe TG, Khaitovich P, Irie N, EXPANDE Consortium.   Constrained vertebrate evolution by pleiotropic genes.   Nat Ecol Evol   2017 -10 -1   1(11)   1722-1730   28963548   10.1038/s41559-017-0318-0  
C.intestinalis / (O.japonicus)   Wild C. int   50312   Sasakura Y, Yoshida K, Treen N.   Genome Editing of the Ascidian Ciona intestinalis with TALE Nuclease.   Methods Mol. Biol.   2017 -6 -24   1630   235-245   28643263   10.1007/978-1-4939-7128-2_19  
C.intestinalis / (O.japonicus)   Wild C. int   49322   Tokuhiro SI, Tokuoka M, Kobayashi K, Kubo A, Oda-Ishii I, Satou Y.   Differential gene expression along the animal-vegetal axis in the ascidian embryo is maintained by a dual functional protein Foxd.   PLoS Genet.   2017 -5 -19   13(5)   e1006741   28520732   10.1371/journal.pgen.1006741  
C.intestinalis / (O.japonicus)   Wild C. int, EJ[MiTSAdTPOG]124   50311   Yoshida K, Nakahata A, Treen N, Sakuma T, Yamamoto T, Sasakura Y.   Hox-mediated endodermal identity patterns pharyngeal muscle formation in the chordate pharynx.   Development   2017 -3 -16   144(9)   1629-1634   28289133   10.1242/dev.144436  
C.intestinalis / (O.japonicus)   Tg[MiCiTnIG]2, Tg[MiCiTnIG]3, Tg[MiCiNutG]3...   47714   Yoshida K, Hozumi A, Treen N, Sakuma T, Yamamoto T, Shirae-Kurabayashi M, Sasakura Y.   Germ cell regeneration-mediated, enhanced mutagenesis in the ascidian Ciona intestinalis reveals flexible germ cell formation from different somatic cells.   Dev. Biol.   2017 -2 -6   423(2)   111-125   28161521   10.1016/j.ydbio.2017.01.022  
C.intestinalis / (O.japonicus)   Wild C. int   47282   Ikeda T, Satou Y.   Differential temporal control of Foxa.a and Zic-r.b specifies brain versus notochord fate in the ascidian embryo.   Development   2016 -11 -27   144(1)   38-43   27888196   10.1242/dev.142174  
C.intestinalis / (O.japonicus)   Wild C. int   47281   Imai KS, Hikawa H, Kobayashi K, Satou Y.   Tfap2 and Sox1/2/3 cooperatively specify ectodermal fates in ascidian embryos.   Development   2016 -11 -27   144(1)   33-37   27888190   10.1242/dev.142109  
C.intestinalis / (O.japonicus)   Wild C. int   47280   Imai KS, Hudson C, Oda-Ishii I, Yasuo H, Satou Y.   Antagonism between β-catenin and Gata.a sequentially segregates the germ layers of ascidian embryos.   Development   2016 -11 -2   143(22)   4167-4172   27707797   10.1242/dev.141481  
C.intestinalis / (O.japonicus)     47644   植木龍也、山口信雄、紙野圭   海産動物の接着機構の研究−接着物質の探索と応用展開−   オレオサイエンス   2016 -11 -1   16 (11)   511-518      
C.intestinalis / (O.japonicus)   Wild C. int   47658   Oonuma K, Tanaka M, Nishitsuji K, Kato Y, Shimai K, Kusakabe TG.   Revised lineage of larval photoreceptor cells in Ciona reveals archetypal collaboration between neural tube and neural crest in sensory organ formation.   Dev. Biol.   2016 -10 -30   420(1)   178-185   27789227   10.1016/j.ydbio.2016.10.014  
C.intestinalis / (O.japonicus)   Wild C. int   46997   Negishi T, Miyazaki N, Murata K, Yasuo H, Ueno N.   Physical association between a novel plasma-membrane structure and centrosome orients cell division.   Elife   2016 -8 -10   5     27502556   10.7554/eLife.16550  
C.intestinalis / (O.japonicus)   Wild C. int   47279   Oda-Ishii I, Kubo A, Kari W, Suzuki N, Rothbächer U, Satou Y.   A Maternal System Initiating the Zygotic Developmental Program through Combinatorial Repression in the Ascidian Embryo.   PLoS Genet.   2016 -5 -7   12(5)   e1006045   27152625   10.1371/journal.pgen.1006045  
C.intestinalis / (O.japonicus)   Wild C. int   47713   Ogura Y, Sasakura Y.   Developmental Control of Cell-Cycle Compensation Provides a Switch for Patterned Mitosis at the Onset of Chordate Neurulation.   Dev. Cell   2016 -4 -20   37(2)   148-61   27093084   10.1016/j.devcel.2016.03.013  
C.intestinalis / (O.japonicus)   Wild C. int   35946   Ohta N, Waki K, Mochizuki A, Satou Y.   A Boolean Function for Neural Induction Reveals a Critical Role of Direct Intercellular Interactions in Patterning the Ectoderm of the Ascidian Embryo.   PLoS Comput. Biol.   2015 -12 -30   11(12)   e1004687   26714026   10.1371/journal.pcbi.1004687  
C.intestinalis / (O.japonicus)   Wild C. int   47660   Yokomori R, Shimai K, Nishitsuji K, Suzuki Y, Kusakabe TG, Nakai K.   Genome-wide identification and characterization of transcription start sites and promoters in the tunicate Ciona intestinalis.   Genome Res.   2015 -12 -17   26(1)   140-50   26668163   10.1101/gr.184648.114  
C.intestinalis / (O.japonicus)   Wild C. int   35148   Waki K, Imai KS, Satou Y.   Genetic pathways for differentiation of the peripheral nervous system in ascidians.   Nat Commun   2015 -10 -31   6   8719   26515371   10.1038/ncomms9719  
C.intestinalis / (O.japonicus)   Wild C. int   47661   Abitua PB, Gainous TB, Kaczmarczyk AN, Winchell CJ, Hudson C, Kamata K, Nakagawa M, Tsuda M, Kusakabe TG, Levine M.   The pre-vertebrate origins of neurogenic placodes.   Nature   2015 -8 -11   524(7566)   462-5   26258298   10.1038/nature14657  
C.intestinalis / (O.japonicus)   Tg[MiCiVACHTK]5 , Tg[MiCiβ2TBK]2 , Tg[MiCiVGATK]1...   47715   Hozumi A, Horie T, Sasakura Y.   Neuronal map reveals the highly regionalized pattern of the juvenile central nervous system of the ascidian Ciona intestinalis.   Dev. Dyn.   2015 -8 -8   244(11)   1375-93   26250096   10.1002/dvdy.24317  
C.intestinalis / (O.japonicus)   Wild C. int   47086   Nakazawa S, Shirae-Kurabayashi M, Otsuka K, Sawada H.   Proteomics of ionomycin-induced ascidian sperm reaction: Released and exposed sperm proteins in the ascidian Ciona intestinalis.   Proteomics   2015 -8 -1   15(23-24)   4064-79   26223815   10.1002/pmic.201500162  
C.intestinalis / (O.japonicus)   Wild C. int   35117   Matsunobu S, Sasakura Y.   Time course for tail regression during metamorphosis of the ascidian Ciona intestinalis.   Dev. Biol.   2015 -6 -24   405(1)   71-81   26102482   10.1016/j.ydbio.2015.06.016  
C.intestinalis / (O.japonicus)   Tg[MiCiZipCifkhK]1, EJ[MiTSAdTPOG]107, Wild C. int   47716   Kawai N, Ogura Y, Ikuta T, Saiga H, Hamada M, Sakuma T, Yamamoto T, Satoh N, Sasakura Y.   Hox10-regulated endodermal cell migration is essential for development of the ascidian intestine.   Dev. Biol.   2015 -4 -19   403(1)   43-56   25888074   10.1016/j.ydbio.2015.03.018  
C.intestinalis / (O.japonicus)   Wild C. int   32217   Nakamura J, Tetsukawa A, Fujiwara S.   Chondroitin 4-O-sulfotransferases are required for cell adhesion and morphogenesis in the Ciona intestinalis embryo.   Dev. Growth Differ.   2014 -12 -17   57(1)   58-67   25495122   10.1111/dgd.12188  
C.intestinalis / (O.japonicus)   Wild C. int   31700   Kawaguchi A, Utsumi N, Morita M, Ohya A, Wada S.   Application of the cis-regulatory region of a heat-shock protein 70 gene to heat-inducible gene expression in the ascidian Ciona intestinalis.   Genesis   2014 -11 -5   53(1)   170-82   25366274   10.1002/dvg.22834  
C.intestinalis / (O.japonicus)   Wild C. int   32216   Nakamura J, Yoshida K, Sasakura Y, Fujiwara S.   Chondroitin 6-O-sulfotransferases are required for morphogenesis of the notochord in the ascidian embryo.   Dev. Dyn.   2014 -10 -10   243(12)   1637-45   25298188   10.1002/dvdy.24213  
C.intestinalis / (O.japonicus)   swimming juvenile (Tg[MiTFr3dTPOG]45) tail regression failed...   33103   Karaiskou A, Swalla BJ, Sasakura Y, Chambon JP.   Metamorphosis in solitary ascidians.   Genesis   2014 -9 -25   53(1)   34-47   25250532   10.1002/dvg.22824  
C.intestinalis / (O.japonicus)   Wild C. int   31334   Satou Y, Hirayama K, Mita K, Fujie M, Chiba S, Yoshida R, Endo T, Sasakura Y, Inaba K, Satoh N.   Sustained heterozygosity across a self-incompatibility locus in an inbred ascidian.   Mol. Biol. Evol.   2014 -9 -23   32(1)   81-90   25234703   10.1093/molbev/msu268  
C.intestinalis / (O.japonicus)     47643   Tatsuya Ueki, Nobuo Yamaguchi, Romaidi, Yoshiaki Isago, Hisashi Tanahashi   Vanadium accumulation in ascidians: A system overview   Coordination Chemistry Reviews   2014 -9 -22   301-302   300-308     10.1016/j.ccr.2014.09.007  
C.intestinalis / (O.japonicus)     33104   Stolfi A, Sasakura Y, Chalopin D, Satou Y, Christiaen L, Dantec C, Endo T, Naville M, Nishida H, Swalla BJ, Volff JN, Voskoboynik A, Dauga D, Lemaire P.   Guidelines for the nomenclature of genetic elements in tunicate genomes.   Genesis   2014 -9 -16   53(1)   1-14   25220678   10.1002/dvg.22822  
C.intestinalis / (O.japonicus)   Wild C. int   31337   Sasaki H, Yoshida K, Hozumi A, Sasakura Y.   CRISPR/Cas9-mediated gene knockout in the ascidian Ciona intestinalis.   Dev. Growth Differ.   2014 -9 -13   56(7)   499-510   25212715   10.1111/dgd.12149  
C.intestinalis / (O.japonicus)   Wild C. int   31335   Sakamaki K, Shimizu K, Iwata H, Imai K, Satou Y, Funayama N, Nozaki M, Yajima M, Nishimura O, Higuchi M, Chiba K, Yoshimoto M, Kimura H, Gracey AY, Shimizu T, Tomii K, Gotoh O, Akasaka K, Sawasaki T, Miller DJ.   The apoptotic initiator caspase-8: its functional ubiquity and genetic diversity during animal evolution.   Mol. Biol. Evol.   2014 -9 -11   31(12)   3282-301   25205508   10.1093/molbev/msu260  
C.intestinalis / (O.japonicus)   Wild C. int   32267   Oonuma K, Hirose D, Takatori N, Saiga H.   Analysis of the Transcription Regulatory Mechanism of Otx During the Development of the Sensory Vesicle in Ciona intestinalis.   Zool. Sci.   2014 -9 -5   31(9)   565-72   25186927   10.2108/zs140060  
C.intestinalis / (O.japonicus)   Wild C. int, Ciinte.Tg[pMi-Ciinte.EF1a>hCdt1(1/100)::mKO2;Ciinte.EF1a>CFP]1,...   31336   Kamiya C, Ohta N, Ogura Y, Yoshida K, Horie T, Kusakabe TG, Satake H, Sasakura Y.   Nonreproductive role of gonadotropin-releasing hormone in the control of ascidian metamorphosis.   Dev. Dyn.   2014 -8 -19   243(12)   1524-35   25130398   10.1002/dvdy.24176  
DNA material, C.intestinalis / (O.japonicus)   Ciona intestinalis EST Clones cibd016c12, ciad062k07,...   31030   Gospodaryov DV, Lushchak OV, Rovenko BM, Perkhulyn NV, Gerards M, Tuomela T, Jacobs HT.   Ciona intestinalis NADH dehydrogenase NDX confers stress-resistance and extended lifespan on Drosophila.   Biochim. Biophys. Acta   2014 -8 -16   1837(11)   1861-1869   25124484   10.1016/j.bbabio.2014.08.001  
C.intestinalis / (O.japonicus)   Wild C. int, Tg[MiCiβ2TBK]2, Tg[MiCiPC2K]2,...   31346   Yokoyama TD, Hotta K, Oka K.   Comprehensive morphological analysis of individual peripheral neuron dendritic arbors in ascidian larvae using the photoconvertible protein Kaede.   Dev. Dyn.   2014 -7 -31   243(10)   1362-73   25073890   10.1002/dvdy.24169  
C.intestinalis / (O.japonicus)   Wild C. int   32215   Shiba K, Inaba K.   Distinct roles of soluble and transmembrane adenylyl cyclases in the regulation of flagellar motility in Ciona sperm.   Int J Mol Sci   2014 -7 -30   15(8)   13192-208   25073090   10.3390/ijms150813192  
C.intestinalis / (O.japonicus)   Wild C. int, Tg[MiCiTnIGCimTG]1, Tg[MiCiTnIGCipemG]2...   30587   Iitsuka T, Mita K, Hozumi A, Hamada M, Satoh N, Sasakura Y.   Transposon-mediated targeted and specific knockdown of maternally expressed transcripts in the ascidian Ciona intestinalis.   Sci Rep   2014 -5 -24   4   5050   24854849   10.1038/srep05050  
C.intestinalis / (O.japonicus)   Wild C. int   30588   Yoshida K, Treen N, Hozumi A, Sakuma T, Yamamoto T, Sasakura Y.   Germ cell mutations of the ascidian Ciona intestinalis with TALE nucleases.   Genesis   2014 -3 -13   52(5)   431-9   24619765   10.1002/dvg.22770  
C.intestinalis / (O.japonicus)   Wild C. int   30507   Ishii H, Shirai T, Makino C, Nishikata T.   Mitochondrial inhibitor sodium azide inhibits the reorganization of mitochondria-rich cytoplasm and the establishment of the anteroposterior axis in ascidian embryo.   Dev. Growth Differ.   2014 -1 -15   56(2)   175-88   24417477   10.1111/dgd.12117  
C.intestinalis / (O.japonicus)   Wild C. int   29210   Treen N, Yoshida K, Sakuma T, Sasaki H, Kawai N, Yamamoto T, Sasakura Y.   Tissue-specific and ubiquitous gene knockouts by TALEN electroporation provide new approaches to investigating gene function in Ciona.   Development   2013 -12 -20   141(2)   481-7   24353063   10.1242/dev.099572  
C.intestinalis / (O.japonicus)   Wild C. int   28424   Suzuki MM, Yoshinari A, Obara M, Takuno S, Shigenobu S, Sasakura Y, Kerr AR, Webb S, Bird A, Nakayama A.   Identical sets of methylated and nonmethylated genes in Ciona intestinalis sperm and muscle cells.   Epigenetics Chromatin   2013 -11 -28   6(1)   38   24279449   10.1186/1756-8935-6-38  
C.intestinalis / (O.japonicus)   Wild C. int   28126   Ikeda T, Matsuoka T, Satou Y.   A time delay gene circuit is required for palp formation in the ascidian embryo.   Development   2013 -11 -21   140(23)   4703-8   24255097   10.1242/dev.100339  
DNA material, C.intestinalis / (O.japonicus)   Wild C. int, Ephrin1648Z (RDB13055); Tgfna2940Z (...   29186   Horikawa Y, Matsumoto H, Yamaguchi F, Ishida S, Fujiwara S.   Transcriptional regulation in the early ectodermal lineage of ascidian embryos.   Dev. Growth Differ.   2013 -11 -7   55(9)   776-85   24192291   10.1111/dgd.12100  
C.intestinalis / (O.japonicus)   Wild C. int   29187   Kawamura K, Shiohara M, Kanda M, Fujiwara S.   Retinoid X receptor-mediated transdifferentiation cascade in budding tunicates.   Dev. Biol.   2013 -10 -15   384(2)   343-55   24120377   10.1016/j.ydbio.2013.10.004  
C.intestinalis / (O.japonicus)   Wild C. int   27875   Matsuoka T, Ikeda T, Fujimaki K, Satou Y.   Transcriptome dynamics in early embryos of the ascidian, Ciona intestinalis.   Dev. Biol.   2013 -10 -15   384(2)   375-85   24120375   10.1016/j.ydbio.2013.10.003  
C.intestinalis / (O.japonicus)   Wild C. int   27876   Ohta N, Satou Y.   Multiple signaling pathways coordinate to induce a threshold response in a chordate embryo.   PLoS Genet.   2013 -10 -8   9(10)   e1003818   24098142   10.1371/journal.pgen.1003818  
C.intestinalis / (O.japonicus)   Wild C. int   31347   Nakamura MJ, Hotta K, Oka K.   Raman spectroscopic imaging of the whole Ciona intestinalis embryo during development.   PLoS ONE   2013 -8 -27   8(8)   e71739   23977129   10.1371/journal.pone.0071739  
C.intestinalis / (O.japonicus)   Wild C. int   32510   Nakazawa K, Yamazawa T, Moriyama Y, Ogura Y, Kawai N, Sasakura Y, Saiga H.   Formation of the digestive tract in Ciona intestinalis includes two distinct morphogenic processes between its anterior and posterior parts.   Dev. Dyn.   2013 -7 -3   242(10)   1172-83   23813578   10.1002/dvdy.24009  
C.intestinalis / (O.japonicus)   Wild C. int   21798   Katsumoto S, Hatta K, Nakagawa M.   Brief hypo-osmotic shock causes test cell death, prevents neurula rotation, and disrupts left-right asymmetry in Ciona intestinalis.   Zool. Sci.   2013 -5 -8   30(5)   352-9   23646939   10.2108/zsj.30.352  
C.intestinalis / (O.japonicus)   Wild C. int   21153   Chenevert J, Pruliere G, Ishii H, Sardet C, Nishikata T.   Purification of mitochondrial proteins HSP60 and ATP synthase from ascidian eggs: implications for antibody specificity.   PLoS ONE   2013 -1 -18   8(1)   e52996   23326373   10.1371/journal.pone.0052996  
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