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Species Resource name RRC ID Author Title Journal Published Volume Pages Pubmed ID DOI
Tomato   TOMJPF00001   47770   Ueta R, Abe C, Watanabe T, Sugano SS, Ishihara R, Ezura H, Osakabe Y, Osakabe K.   Rapid breeding of parthenocarpic tomato plants using CRISPR/Cas9.   Sci Rep   2017 -3 -30   7(1)   507   28360425   10.1038/s41598-017-00501-4  
Tomato   TOMJPF00001   47769   Shimatani Z, Kashojiya S, Takayama M, Terada R, Arazoe T, Ishii H, Teramura H, Yamamoto T, Komatsu H, Miura K, Ezura H, Nishida K, Ariizumi T, Kondo A.   Targeted base editing in rice and tomato using a CRISPR-Cas9 cytidine deaminase fusion.   Nat. Biotechnol.   2017 -3 -27       28346401   10.1038/nbt.3833  
Tomato   TOMJPF00001   47759   Kudo T, Kobayashi M, Terashima S, Katayama M, Ozaki S, Kanno M, Saito M, Yokoyama K, Ohyanagi H, Aoki K, Kubo Y, Yano K.   TOMATOMICS: A Web Database for Integrated Omics Information in Tomato.   Plant Cell Physiol.   2017 -1 -22       28111364   10.1093/pcp/pcw207  
Tomato   TOMJPF00001, TOMJPF00004   47758   Hao S, Ariizumi T, Ezura H.   SEXUAL STERILITY is Essential for Both Male and Female Gametogenesis in Tomato.   Plant Cell Physiol.   2017 -1 -12       28082517   10.1093/pcp/pcw214  
Tomato   TOMJPF00001   47757   Garcia V, Bres C, Just D, Fernandez L, Tai FW, Mauxion JP, Le Paslier MC, Bérard A, Brunel D, Aoki K, Alseekh S, Fernie AR, Fraser PD, Rothan C.   Rapid identification of causal mutations in tomato EMS populations via mapping-by-sequencing.   Nat Protoc   2016 -12   11(12)   2401-2418   27809315   10.1038/nprot.2016.143  
Tomato   TOMJPF00001   47763   Sasaki T, Tsuchiya Y, Ariyoshi M, Nakano R, Ushijima K, Kubo Y, Mori IC, Higashiizumi E, Galis I, Yamamoto Y.   Two Members of the Aluminum-Activated Malate Transporter Family, SlALMT4 and SlALMT5, are Expressed during Fruit Development, and the Overexpression of SlALMT5 Alters Organic Acid Contents in Seeds in Tomato (Solanum lycopersicum).   Plant Cell Physiol.   2016 -11   57(11)   2367-2379   27615796   10.1093/pcp/pcw157  
Tomato   TOMJPF00001   47761   Wang N, Duhita N, Ariizumi T, Ezura H.   Involvement of vacuolar processing enzyme SlVPE5 in post-transcriptional process of invertase in sucrose accumulation in tomato.   Plant Physiol. Biochem.   2016 -11   108   71-78   27423072   10.1016/j.plaphy.2016.06.037  
Tomato   TOMJPF00001   47767   Kudo T, Sasaki Y, Terashima S, Matsuda-Imai N, Takano T, Saito M, Kanno M, Ozaki S, Suwabe K, Suzuki G, Watanabe M, Matsuoka M, Takayama S, Yano K.   Identification of reference genes for quantitative expression analysis using large-scale RNA-seq data of Arabidopsis thaliana and model crop plants.   Genes Genet. Syst.   2016 -10 -13   91(2)   111-125   27040147   10.1266/ggs.15-00065  
Tomato   TOMJPF00001, TOMJPG4497-1, TOMJPG5663-1   47768   Fernandez-Moreno JP, Tzfadia O, Forment J, Presa S, Rogachev I, Meir S, Orzaez D, Aharoni A, Granell A.   Characterization of a New Pink-Fruited Tomato Mutant Results in the Identification of a Null Allele of the SlMYB12 Transcription Factor.   Plant Physiol.   2016 -7   171(3)   1821-36   27208285   10.1104/pp.16.00282  
Tomato   TOMJPF00001   47762   Kunishima M, Yamauchi Y, Mizutani M, Kuse M, Takikawa H, Sugimoto Y.   Identification of (Z)-3:(E)-2-Hexenal Isomerases Essential to the Production of the Leaf Aldehyde in Plants.   J. Biol. Chem.   2016 -7 -01   291(27)   14023-33   27129773   10.1074/jbc.M116.726687  
Tomato   TOMJPF00001   47764   Lu Y, Yasuda S, Li X, Fukao Y, Tohge T, Fernie AR, Matsukura C, Ezura H, Sato T, Yamaguchi J.   Characterization of ubiquitin ligase SlATL31 and proteomic analysis of 14-3-3 targets in tomato fruit tissue (Solanum lycopersicum L.).   J Proteomics   2016 -6 -30   143   254-64   27113132   10.1016/j.jprot.2016.04.016  
Tomato   TOMJPF00005, TOMJPF00013-49   47766   Ikeda H, Shibuya T, Imanishi S, Aso H, Nishiyama M, Kanayama Y.   Dynamic Metabolic Regulation by a Chromosome Segment from a Wild Relative During Fruit Development in a Tomato Introgression Line, IL8-3.   Plant Cell Physiol.   2016 -6   57(6)   1257-70   27076398   10.1093/pcp/pcw075  
Tomato   TOMJPF00001   47765   Thagun C, Imanishi S, Kudo T, Nakabayashi R, Ohyama K, Mori T, Kawamoto K, Nakamura Y, Katayama M, Nonaka S, Matsukura C, Yano K, Ezura H, Saito K, Hashimoto T, Shoji T.   Jasmonate-Responsive ERF Transcription Factors Regulate Steroidal Glycoalkaloid Biosynthesis in Tomato.   Plant Cell Physiol.   2016 -5   57(5)   961-75   27084593   10.1093/pcp/pcw067  
Tomato   TOMJPF00001   47760   Müller F, Xu J, Kristensen L, Wolters-Arts M, de Groot PF, Jansma SY, Mariani C, Park S, Rieu I.   High-Temperature-Induced Defects in Tomato (Solanum lycopersicum) Anther and Pollen Development Are Associated with Reduced Expression of B-Class Floral Patterning Genes.   PLoS ONE   2016   11(12)   e0167614   27936079   10.1371/journal.pone.0167614  
Tomato   TOMJPF00001   35164   Shikata M, Ezura H.   Micro-Tom Tomato as an Alternative Plant Model System: Mutant Collection and Efficient Transformation.   Methods Mol. Biol.   2016   1363   47-55   26577780   10.1007/978-1-4939-3115-6_5  
Tomato   TOMJPF00001(Micro-Tom)   35711   Shikata M, Hoshikawa K, Ariizumi T, Fukuda N, Yamazaki Y, Ezura H.   TOMATOMA Update: Phenotypic and Metabolite Information in the Micro-Tom Mutant Resource.   Plant Cell Physiol.   2015 -12 -30       26719120   10.1093/pcp/pcv194  
Tomato   TOMJPF00001   35163   Huang YX, Yin YG, Sanuki A, Fukuda N, Ezura H, Matsukura C.   Phosphoenolpyruvate carboxykinase (PEPCK) deficiency affects the germination, growth and fruit sugar content in tomato (Solanum lycopersicum L.).   Plant Physiol. Biochem.   2015 -11   96   417-25   26381194   10.1016/j.plaphy.2015.08.021  
Tomato   S. lycopersicum cv. Micro-Tom   36204   Nagata M, Yamamoto N, Shigeyama T, Terasawa Y, Anai T, Sakai T, Inada S, Arima S, Hashiguchi M, Akashi R, Nakayama H, Ueno D, Hirsch AM, Suzuki A.   Red/Far Red Light Controls Arbuscular Mycorrhizal Colonization via Jasmonic Acid and Strigolactone Signaling.   Plant Cell Physiol.   2015 -11   56(11)   2100-9   26412782   10.1093/pcp/pcv135  
Tomato     34532   Mubarok S, Okabe Y, Fukuda N, Ariizumi T, Ezura H.   Potential Use of a Weak Ethylene Receptor Mutant, Sletr1-2, as Breeding Material To Extend Fruit Shelf Life of Tomato.   J. Agric. Food Chem.   2015 -9 -1       26208257   10.1021/acs.jafc.5b02742  
Tomato     34531   Takayama M, Ezura H.   How and why does tomato accumulate a large amount of GABA in the fruit?   Front Plant Sci   2015 -9 -1   6   612   26322056   10.3389/fpls.2015.00612  
Tomato   TOMJPF00001(Micro-Tom)   33523   Takayama M, Koike S, Kusano M, Matsukura C, Saito K, Ariizumi T, Ezura H.   Tomato Glutamate Decarboxylase Genes SlGAD2 and SlGAD3 Play Key Roles in Regulating γ-Aminobutyric Acid Levels in Tomato (Solanum lycopersicum).   Plant Cell Physiol.   2015 -8   56(8)   1533-45   26009591   10.1093/pcp/pcv075  
Tomato   TOMJPF00001(Micro-Tom), TOMJPE2811-1(iaa9-3), TOMJPE5803-1...   33522   Shinozaki Y, Hao S, Kojima M, Sakakibara H, Ozeki-Iida Y, Zheng Y, Fei Z, Zhong S, Giovannoni JJ, Rose JK, Okabe Y, Heta Y, Ezura H, Ariizumi T.   Ethylene suppresses tomato (Solanum lycopersicum) fruit set through modification of gibberellin metabolism.   Plant J.   2015 -7   83(2)   237-51   25996898   10.1111/tpj.12882  
Tomato   TOMJPF00001 (Micro-Tom)   33293   Tsuchiya M, Satoh S, Iwai H.   Distribution of XTH, expansin, and secondary-wall-related CesA in floral and fruit abscission zones during fruit development in tomato (Solanum lycopersicum).   Front Plant Sci   2015 -6 -2   6   323   26029225   10.3389/fpls.2015.00323  
Tomato   TOMJPF00001 (Micro-Tom)   33160   Iwase A, Mita K, Nonaka S, Ikeuchi M, Koizuka C, Ohnuma M, Ezura H, Imamura J, Sugimoto K.   WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.   J. Plant Res.   2015 -5   128(3)   389-97   25810222   10.1007/s10265-015-0714-y  
Tomato   TOMJPG1269-1, TOMJPG1679-1, TOMJPG2893-1, TOMJPE6018-1...   32672   Shirasawa K, Hirakawa H, Nunome T, Tabata S, Isobe S.   Genome-wide survey of artificial mutations induced by ethyl methanesulfonate and gamma rays in tomato.   Plant Biotechnol. J.   2015 -2 -16       25689669   10.1111/pbi.12348  
Tomato   TOMJPF00001 (Micro-Tom)   32737   Yamazaki H, Suzui N, Yin YG, Kawachi N, Ishii S, Shimada H, Fujimaki S   Live-imaging evaluation of the efficacy of elevated CO 2 concentration in a closed cultivation system for the improvement of bioproduction in tomato fruits   Plant Biotechnology.   2015 -2 -6         10.5511/plantbiotechnology.14.1210a  
Tomato   TOMJPF00001 (Micro-Tom)   32172   Sawai S, Ohyama K, Yasumoto S, Seki H, Sakuma T, Yamamoto T, Takebayashi Y, Kojima M, Sakakibara H, Aoki T, Muranaka T, Saito K, Umemoto N.   Sterol side chain reductase 2 is a key enzyme in the biosynthesis of cholesterol, the common precursor of toxic steroidal glycoalkaloids in potato.   Plant Cell   2014 -9   26(9)   3763-74   25217510   10.1105/tpc.114.130096  
Tomato   TOMJPF00001(Micro-Tom)   30626   Ariizumi T, Kishimoto S, Kakami R, Maoka T, Hirakawa H, Suzuki Y, Ozeki Y, Shirasawa K, Bernillon S, Okabe Y, Moing A, Asamizu E, Rothan C, Ohmiya A, Ezura H.   Identification of the carotenoid modifying gene PALE YELLOW PETAL 1 as an essential factor in xanthophyll esterification and yellow flower pigmentation in tomato (Solanum lycopersicum).   Plant J.   2014 -8   79(3)   453-65   24888879   10.1111/tpj.12570  
Tomato   TOMJPF00001 (Micro-Tom)   32170   Ohyama K, Okawa A, Fujimoto Y.   Biosynthesis of steroidal alkaloids in Solanaceae plants: incorporation of 3β-hydroxycholest-5-en-26-al into tomatine with tomato seedlings.   Bioorg. Med. Chem. Lett.   2014 -8 -1   24(15)   3556-8   24909078   10.1016/j.bmcl.2014.05.048  
Tomato   TOMJPF00001(Micro-Tom), TOMJPE0206-1   29185   Chusreeaeom K, Ariizumi T, Asamizu E, Okabe Y, Shirasawa K, Ezura H.   A novel tomato mutant, Solanum lycopersicum elongated fruit1 (Slelf1), exhibits an elongated fruit shape caused by increased cell layers in the proximal region of the ovary.   Mol. Genet. Genomics   2014 -6   289(3)   399-409   24519535   10.1007/s00438-014-0822-8  
Tomato     30958   Reuscher S, Akiyama M, Yasuda T, Makino H, Aoki K, Shibata D, Shiratake K.   The sugar transporter inventory of tomato: genome-wide identification and expression analysis.   Plant Cell Physiol.   2014 -6   55(6)   1123-41   24833026   10.1093/pcp/pcu052  
Tomato     30491   Chusreeaeom K, Ariizumi T, Asamizu E, Okabe T, Shirasawa K, Ezura H.   Regulatory change in cell division activity and genetic mapping of a tomato (Solanum lycopersicum L.) elongated-fruit mutant.   Plant Biotechnology.   2014 -5 -28   31   149-158     10.5511/plantbiotechnology.14.0204a  
Tomato   TOMJPF00001(Micro-Tom)   28463   Kobayashi M, Nagasaki H, Garcia V, Just D, Bres C, Mauxion JP, Le Paslier MC, Brunel D, Suda K, Minakuchi Y, Toyoda A, Fujiyama A, Toyoshima H, Suzuki T, Igarashi K, Rothan C, Kaminuma E, Nakamura Y, Yano K, Aoki K.   Genome-wide analysis of intraspecific DNA polymorphism in 'Micro-Tom', a model cultivar of tomato (Solanum lycopersicum).   Plant Cell Physiol.   2014 -2   55(2)   445-54   24319074   10.1093/pcp/pct181  
Tomato     32241   Fukami-Kobayashi K, Nakamura Y, Tamura T, Kobayashi M.   SABRE2: a database connecting plant EST/full-length cDNA clones with Arabidopsis information.   Plant Cell Physiol.   2014 -1   55(1)   e5   24323624   10.1093/pcp/pct177  
Tomato   TOMJPF00001(Micro-Tom)   30250   Takizawa A, Hyodo H, Wada K, Ishii T, Satoh S, Iwai H.   Regulatory specialization of xyloglucan (XG) and glucuronoarabinoxylan (GAX) in pericarp cell walls during fruit ripening in tomato (Solanum lycopersicum).   PLoS ONE   2014   9(2)   e89871   24587088   10.1371/journal.pone.0089871  
Tomato   TOMJPF00001(Micro-Tom)   30670   Uraguchi S, Kato Y, Hanaoka H, Miwa K, Fujiwara T.   Generation of boron-deficiency-tolerant tomato by overexpressing an Arabidopsis thaliana borate transporter AtBOR1.   Front Plant Sci   2014   5   125   24744768   10.3389/fpls.2014.00125  
Tomato   TOMJPF00001 (Micro-Tom)   31349   Wada T, Kunihiro A, Tominaga-Wada R.   Arabidopsis CAPRICE (MYB) and GLABRA3 (bHLH) control tomato (Solanum lycopersicum) anthocyanin biosynthesis.   PLoS ONE   2014   9(9)   e109093   25268379   10.1371/journal.pone.0109093  
Tomato   TOMJPF00001(Micro-Tom), TOMJPF00008(Solanum pen...   27304   Shirasawa K, Fukuoka H, Matsunaga H, Kobayashi Y, Kobayashi I, Hirakawa H, Isobe S, Tabata S.   Genome-wide association studies using single nucleotide polymorphism markers developed by re-sequencing of the genomes of cultivated tomato.   DNA Res.   2013 -12   20(6)   593-603   23903436   10.1093/dnares/dst033  
Tomato   TOMJPF00002(Moneymaker)   27873   Someya T, Nonaka S, Nakamura K, Ezura H.   Increased 1-aminocyclopropane-1-carboxylate deaminase activity enhances Agrobacterium tumefaciens-mediated gene delivery into plant cells.   Microbiologyopen   2013 -10   2(5)   873-80   24000136   10.1002/mbo3.123  
Tomato     27908   Baldet P, Bres C, Okabe Y, Mauxion JP, Just D, Bournonville C, Ferrand C, Mori M, Ezura H, Rothan C   Investigating the role of vitamin C in tomato through TILLING identification of ascorbate-deficient tomato mutants.   Plant Biotechnology.   2013 -9 -11   30   309-314     10.5511/plantbiotechnology.13.0622b  
Tomato     27907   Just D, Garcia V, Ferrand C, Bres C, Mauxion JP, Petit J, Jorly J, Assali J, Boumonville, Ferrand C, Baldet P, Lemaire-Chamley M, Mori K, Okabe Y, Ariizumi T, Asamizu E, Ezura H, Rothan C   Micro-Tom mutants for functional analysis of target genes and discovery of new alleles in tomato.   Plant Biotechnology.   2013 -9 -11   30   225-231     10.5511/plantbiotechnology.13.0622a  
Tomato   TOMJPF00013-04   27872   Kimbara J, Yoshida M, Ito H, Kitagawa M, Takada W, Hayashi K, Shibutani Y, Kusano M, Okazaki Y, Nakabayashi R, Mori T, Saito K, Ariizumi T, Ezura H.   Inhibition of CUTIN DEFICIENT 2 Causes Defects in Cuticle Function and Structure and Metabolite Changes in Tomato Fruit.   Plant Cell Physiol.   2013 -9   54(9)   1535-48   23912028   10.1093/pcp/pct100  
Tomato   TOMJPF00001(Micro-Tom)   27331   Terao A, Hyodo H, Satoh S, Iwai H.   Changes in the distribution of cell wall polysaccharides in early fruit pericarp and ovule, from fruit set to early fruit development, in tomato (Solanum lycopersicum).   J. Plant Res.   2013 -9   126(5)   719-28   23455617   10.1007/s10265-013-0555-5  
Tomato     27870   Mori K, Lemaire-Chamley M, Nonaka S, Asamizu E, Mizoguchi T, Ezura H, Rothan C.   Comparative analysis of common genes involved in early fruit development of tomato and grape.   Plant Biotechnology.   2013 -8 -10   30   295-300     10.5511/plantbiotechnology.13.0321a  
Tomato     27871   Goto Y, Nonaka S, Yin Y, Koiwa T, Asamizu E, Ezura H, Matsukura C.   Isolation and characterization of the ADP-glucose pyrophsphorylase small subunit gene (AgpS1) promoter in tomato (Solanum lycopersicum L.).   Plant Biotechnology.   2013 -8 -7   30   279-286     10.5511/plantbiotechnology.13.0603a  
Tomato     27767   Yan R, Yokotani N, Yamaoka T, Ushijima K, Nakano R, Yano K, Aoki K, Kubo Y   Characterization of ripening-associated genes using a tomato DNA macroarray, 1-methylcyclopropene, and ripening-impaired mutants.   Postharvest Biol Technol.   2013 -7 -21   86   159-170     10.1016/j.postharvbio.2013.06.028  
Tomato     27337   Nukumizu Y, Wada T, Tominaga-Wada R.   Tomato (Solanum lycopersicum) homologs of TRIPTYCHON (SlTRY) and GLABRA3 (SlGL3) are involved in anthocyanin accumulation.   Plant Signal Behav   2013 -7   8(7)   e24575   23603939   10.4161/psb.24575  
Tomato   TOMJPF00001, TOMJPF00008, TOMJPF00009-1, TOMJPF00010-1...   30505   Hirakawa H, Shirasawa K, Ohyama A, Fukuoka H, Aoki K, Rothan C, Sato S, Isobe S, Tabata S.   Genome-wide SNP genotyping to infer the effects on gene functions in tomato.   DNA Res.   2013 -6   20(3)   221-33   23482505   10.1093/dnares/dst005  
Tomato     27335   Narusaka M, Kubo Y, Hatakeyama K, Imamura J, Ezura H, Nanasato Y, Tabei Y, Takano Y, Shirasu K, Narusaka Y.   Breaking restricted taxonomic functionality by dual resistance genes.   Plant Signal Behav   2013 -6   8(6)   e24244   23518587   10.4161/psb.24244  
Tomato     27332   Iwai H, Terao A, Satoh S.   Changes in distribution of cell wall polysaccharides in floral and fruit abscission zones during fruit development in tomato (Solanum lycopersicum).   J. Plant Res.   2013 -5   126(3)   427-37   23124772   10.1007/s10265-012-0536-0  
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Species Resource Name Application No Publication No Title of the invention Inventor's name Applicant External collaborator Filing Date Publication Date
Tomato    特願2013-231495  特開2015-089368  変異型植物  江面 浩 有泉 亨 篠崎 良仁 金原 淳司 草野 都 福島 敦史 斉藤 和季  国立大学法人 筑波大学 カゴメ株式会社 国立研究開発法人理化学研究所    2013-11-7  2015-5-11 
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