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Species Resource name RRC ID Author Title Journal Published Volume Pages Pubmed ID DOI
Tropical clawed frog   ネッタイツメガエル   49306   Saka M, Tada N, Kamata Y.   Chronic toxicity of 1,3,5-triazine herbicides in the postembryonic development of the western clawed frog Silurana tropicalis.   Ecotoxicol. Environ. Saf.   2017 -9 -5   147   373-381   28869887   10.1016/j.ecoenv.2017.08.063  
Tropical clawed frog   X. tropicalis   47751   Suzuki KT, Suzuki M, Shigeta M, Fortriede JD, Takahashi S, Mawaribuchi S, Yamamoto T, Taira M, Fukui A.   Clustered Xenopus keratin genes: A genomic, transcriptomic, and proteomic analysis.   Dev. Biol.   2016 -11 -16   426(2)   384-392   27842699   10.1016/j.ydbio.2016.10.018  
Tropical clawed frog   X. tropicalis   47753   Haramoto Y, Saijyo T, Tanaka T, Furuno N, Suzuki A, Ito Y, Kondo M, Taira M, Takahashi S.   Identification and comparative analyses of Siamois cluster genes in Xenopus laevis and tropicalis.   Dev. Biol.   2016 -10 -19   426(2)   374-383   27522305   10.1016/j.ydbio.2016.07.015  
Tropical clawed frog   X. tropicalis   47742   Matsui S, Ito-Harashima S, Sugimoto Y, Takada E, Shiizaki K, Kawanishi M, Yagi T.   Development of yeast reporter assays for the enhanced detection of environmental ligands of thyroid hormone receptors α and β from Xenopus tropicalis.   Toxicol In Vitro   2016 -10 -19   37   15-24   27544454   10.1016/j.tiv.2016.08.008  
Tropical clawed frog   X. tropicalis   47743   Suzuki A, Uno Y, Takahashi S, Grimwood J, Schmutz J, Mawaribuchi S, Yoshida H, Takebayashi-Suzuki K, Ito M, Matsuda Y, Rokhsar D, Taira M.   Genome organization of the vg1 and nodal3 gene clusters in the allotetraploid frog Xenopus laevis.   Dev. Biol.   2016 -10 -11   426(2)   236-244   27720224   10.1016/j.ydbio.2016.04.014  
Tropical clawed frog   X. tropicalis   47744   Suzuki A, Yoshida H, van Heeringen SJ, Takebayashi-Suzuki K, Veenstra GJC, Taira M.   Genomic organization and modulation of gene expression of the TGF-β and FGF pathways in the allotetraploid frog Xenopus laevis.   Dev. Biol.   2016 -10 -4   426(2)   336-359   27692744   10.1016/j.ydbio.2016.09.016  
Tropical clawed frog   X. tropicalis   47752   Nakayama T, Nakajima K, Cox A, Fisher M, Howell M, Fish MB, Yaoita Y, Grainger RM.   no privacy, a Xenopus tropicalis mutant, is a model of human Hermansky-Pudlak Syndrome and allows visualization of internal organogenesis during tadpole development.   Dev. Biol.   2016 -9 -7   426(2)   472-486   27595926   10.1016/j.ydbio.2016.08.020  
Tropical clawed frog   X. tropicalis   47745   Goto-Inoue N, Kashiwagi A, Kashiwagi K, Mori T.   Metabolomic approach for identifying and visualizing molecular tissue markers in tadpoles of Xenopus tropicalis by mass spectrometry imaging.   Biol Open   2016 -7 -17   5(9)   1252-9   27422901   10.1242/bio.019646  
Tropical clawed frog   X. tropicalis   47754   Tanaka T, Ochi H, Takahashi S, Ueno N, Taira M.   Genes coding for cyclin-dependent kinase inhibitors are fragile in Xenopus.   Dev. Biol.   2016 -7 -10   426(2)   291-300   27393661   10.1016/j.ydbio.2016.06.019  
Tropical clawed frog   X. tropicalis   47748   Yoshida H, Okada M, Takebayashi-Suzuki K, Ueno N, Suzuki A.   Involvement of JunB Proto-Oncogene in Tail Formation During Early Xenopus Embryogenesis.   Zool. Sci.   2016 -6 -9   33(3)   282-9   27268982   10.2108/zs150136  
Tropical clawed frog   X. tropicalis   47747   Shigeta M, Sakane Y, Iida M, Suzuki M, Kashiwagi K, Kashiwagi A, Fujii S, Yamamoto T, Suzuki KT.   Rapid and efficient analysis of gene function using CRISPR-Cas9 in Xenopus tropicalis founders.   Genes Cells   2016 -5 -25   21(7)   755-71   27219625   10.1111/gtc.12379  
Tropical clawed frog   X. tropicalis   47749   Saito S, Ohkita M, Saito CT, Takahashi K, Tominaga M, Ohta T.   Evolution of Heat Sensors Drove Shifts in Thermosensation between Xenopus Species Adapted to Different Thermal Niches.   J. Biol. Chem.   2016 -3 -30   291(21)   11446-59   27022021   10.1074/jbc.M115.702498  
Tropical clawed frog   IS-pXeX (plasmid)   47924   Suzuki M, Takagi C, Miura S, Sakane Y, Suzuki M, Sakuma T, Sakamoto N, Endo T, Kamei Y, Sato Y, Kimura H, Yamamoto T, Ueno N, Suzuki KT.   In vivo tracking of histone H3 lysine 9 acetylation in Xenopus laevis during tail regeneration.   Genes Cells   2016 -2 -26   21(4)   358-69   26914410   10.1111/gtc.12349  
Tropical clawed frog   X. tropicalis   47750   Nakai Y, Nakajima K, Robert J, Yaoita Y.   Ouro proteins are not essential to tail regression during Xenopus tropicalis metamorphosis.   Genes Cells   2016 -2 -6   21(3)   275-86   26847415   10.1111/gtc.12337  
Tropical clawed frog   Nigerian A line, Ivory Coast line   36057   Hayashi S, Kobayashi T, Yano T, Kamiyama N, Egawa S, Seki R, Takizawa K, Okabe M, Yokoyama H, Tamura K.   Evidence for an amphibian sixth digit.   Zoological Lett   2015 -11 -26   1   17   26605062   10.1186/s40851-015-0019-y  
Tropical clawed frog   X. tropicalis   47755   Hayashi S, Kawaguchi A, Uchiyama I, Kawasumi-Kita A, Kobayashi T, Nishide H, Tsutsumi R, Tsuru K, Inoue T, Ogino H, Agata K, Tamura K, Yokoyama H.   Epigenetic modification maintains intrinsic limb-cell identity in Xenopus limb bud regeneration.   Dev. Biol.   2015 -8 -19   406(2)   271-82   26282893   10.1016/j.ydbio.2015.08.013  
Tropical clawed frog   Ivory Coast, Nigerian, Golden   34824   Igawa T, Watanabe A, Suzuki A, Kashiwagi A, Kashiwagi K, Noble A, Guille M, Simpson DE, Horb ME, Fujii T, Sumida M.   Inbreeding Ratio and Genetic Relationships among Strains of the Western Clawed Frog, Xenopus tropicalis.   PLoS ONE   2015 -7 -30   10(7)   e0133963   26222540   10.1371/journal.pone.0133963  
Tropical clawed frog   X. tropicalis   47756   Hikosaka A, Uno Y, Matsuda Y.   Distribution of the T2-MITE Family Transposons in the Xenopus (Silurana) tropicalis Genome.   Cytogenet. Genome Res.   2015 -6 -6   145(3-4)   230-42   26044280   10.1159/000430764  
Tropical clawed frog   X. tropicalis   47746   Haramoto Y, Oshima T, Takahashi S, Asashima M, Ito Y, Kurabayashi A.   Complete mitochondrial genome of "Xenopus tropicalis" Asashima line (Anura: Pipidae), a possible undescribed species.   Mitochondrial DNA A DNA Mapp Seq Anal   2015 -2 -26   27(5)   3341-3   25714145   10.3109/19401736.2015.1018213  
DNA material, Tropical clawed frog   RDB6727 X. laevis whole embryo(stage 10.5) EST cl...   32637   Epting D, Slanchev K, Boehlke C, Hoff S, Loges NT, Yasunaga T, Indorf L, Nestel S, Lienkamp SS, Omran H, Kuehn EW, Ronneberger O, Walz G, Kramer-Zucker A.   The Rac1 regulator ELMO controls basal body migration and docking in multiciliated cells through interaction with Ezrin.   Development   2014 -12 -18   142(1)   174-84   25516973   10.1242/dev.112250  
Tropical clawed frog   X. tropicalis   30831   Yasuoka Y, Suzuki Y, Takahashi S, Someya H, Sudou N, Haramoto Y, Cho KW, Asashima M, Sugano S, Taira M.   Occupancy of tissue-specific cis-regulatory modules by Otx2 and TLE/Groucho for embryonic head specification.   Nat Commun   2014 -7 -10   5   4322   25005894   10.1038/ncomms5322  
Tropical clawed frog   Ivory Coast line   31795   Yajima H, Suzuki M, Ochi H, Ikeda K, Sato S, Yamamura K, Ogino H, Ueno N, Kawakami K.   Six1 is a key regulator of the developmental and evolutionary architecture of sensory neurons in craniates.   BMC Biol.   2014 -6 -3   12   40   24885223   10.1186/1741-7007-12-40  
Tropical clawed frog   Nigerian H line   31794   Kobayashi Y, Hamamoto A, Hirayama T, Saito Y.   Molecular cloning, expression, and signaling pathway of four melanin-concentrating hormone receptors from Xenopus tropicalis.   Gen. Comp. Endocrinol.   2014 -3 -26   212   114-23   24662390   10.1016/j.ygcen.2014.03.005  
Tropical clawed frog   Nigerian H line   31791   Takeuchi T, Kubo Y, Okano K, Okano T.   Identification and characterization of cryptochrome4 in the ovary of western clawed frog Xenopus tropicalis.   Zool. Sci.   2014 -3 -8   31(3)   152-9   24601777   10.2108/zsj.31.152  
Tropical clawed frog   Nigerian H line   31792   Miyake A, Araki M.   Retinal stem/progenitor cells in the ciliary marginal zone complete retinal regeneration: a study of retinal regeneration in a novel animal model.   Dev Neurobiol   2014 -2 -4   74(7)   739-56   24488715   10.1002/dneu.22169  
Tropical clawed frog   Ivory Coast line   31793   Yamashita T, Ono K, Ohuchi H, Yumoto A, Gotoh H, Tomonari S, Sakai K, Fujita H, Imamoto Y, Noji S, Nakamura K, Shichida Y.   Evolution of mammalian Opn5 as a specialized UV-absorbing pigment by a single amino acid mutation.   J. Biol. Chem.   2014 -1 -10   289(7)   3991-4000   24403072   10.1074/jbc.M113.514075  
Tropical clawed frog   Ivory Coast line   31810   Araki M.   A model for retinal regeneration in Xenopus.   Xenopus Development (ed. M Kloc, J Z Kubiak)   2014          
Tropical clawed frog   Golden line   31814   Hanada H, K Kashiwagi, K Suzuki, I Tazawa, T Yamamoto, A Kashiwagi.   Minireview: Suppression of anuran metamorphosis by synthetic chemical compounds.   In Frogs: Genetic Diversity, Neural Development and Environmental influences   2014          
Tropical clawed frog   Nigerian H line   31802   Kurabayashi A, R Kakehashi, I Tazawa, Y Haramoto,T Oshima, Y Ito, M Sumida.   Improved transport of the model amphibian Xenopus tropicalis, and its viable temperature for transport.   Curr Herpetol.   2014   33   75-87      
Tropical clawed frog   Ivory Coast line   31805   Ochi H, A Kawaguchi, H Ogino.   Differential use of paralogous genes via evolution of cis-regulatory elements for divergent expression specificities.   In New Principles in Depvelopmental Processes (ed. Kondoh H, Kuroiwa A.)   2014   chapter11        
Tropical clawed frog   Ivory Coast line   31784   Nakajima K, Yaoita Y.   Comparison of TALEN scaffolds in Xenopus tropicalis.   Biol Open   2013 -11 -29   2(12)   1364-70   24285709   10.1242/bio.20136676  
Human and Animal Cells, Tropical clawed frog   Nigerian H line   31788   Nejigane S, Takahashi S, Haramoto Y, Michiue T, Asashima M.   Hippo signaling components, Mst1 and Mst2, act as a switch between self-renewal and differentiation in Xenopus hematopoietic and endothelial progenitors.   Int. J. Dev. Biol.   2013 -7 -23   57(5)   407-14   23873372   10.1387/ijdb.130010st  
Tropical clawed frog   Ivory Coast line   31785   Nakajima K, Nakai Y, Okada M, Yaoita Y.   Targeted gene disruption in the Xenopus tropicalis genome using designed TALE nucleases.   Zool. Sci.   2013 -6 -1   30(6)   455-60   23721469   10.2108/zsj.30.455  
Tropical clawed frog   Golden line   31787   Saka M, Tada N, Kamata Y.   Application of an amphibian (Silurana tropicalis) metamorphosis assay to the testing of the chronic toxicity of three rice paddy herbicides: simetryn, mefenacet, and thiobencarb.   Ecotoxicol. Environ. Saf.   2013 -4 -20   92   135-43   23597675   10.1016/j.ecoenv.2013.03.023  
Tropical clawed frog   Ivory Coast line   31786   Okada M, Tazawa I, Nakajima K, Yaoita Y.   Expression of the amelogenin gene in the skin of Xenopus tropicalis.   Zool. Sci.   2013 -3 -14   30(3)   154-9   23480373   10.2108/zsj.30.154  
Tropical clawed frog   Golden line   31789   Takagi C, Sakamaki K, Morita H, Hara Y, Suzuki M, Kinoshita N, Ueno N.   Transgenic Xenopus laevis for live imaging in cell and developmental biology.   Dev. Growth Differ.   2013 -3 -14   55(4)   422-33   23480392   10.1111/dgd.12042  
Tropical clawed frog   Nigerian H line   31790   Oka T, Mitsui-Watanabe N, Tatarazako N, Onishi Y, Katsu Y, Miyagawa S, Ogino Y, Yatsu R, Kohno S, Takase M, Kawashima Y, Ohta Y, Aoki Y, Guillette LJ Jr, Iguchi T.   Establishment of transactivation assay systems using fish, amphibian, reptilian and human thyroid hormone receptors.   J Appl Toxicol   2012 -11 -1   33(9)   991-1000   23112079   10.1002/jat.2825  
Tropical clawed frog   Ivory Coast line   31779   Nakajima K, Nakajima T, Takase M, Yaoita Y.   Generation of albino Xenopus tropicalis using zinc-finger nucleases.   Dev. Growth Differ.   2012 -10 -31   54(9)   777-84   23106502   10.1111/dgd.12006  
Tropical clawed frog   Nigerian H line   31778   Saka M, Tada N, Kamata Y.   Examination of an amphibian metamorphosis assay under an individual-separated exposure system using Silurana tropicalis tadpoles.   Ecotoxicol. Environ. Saf.   2012 -10 -17   86   86-92   23067544   10.1016/j.ecoenv.2012.08.034  
Tropical clawed frog   Nigerian H line   31777   Ogino H, Ochi H, Uchiyama C, Louie S, Grainger RM.   Comparative genomics-based identification and analysis of cis-regulatory elements.   Methods Mol. Biol.   2012 -9 -8   917   245-63   22956093   10.1007/978-1-61779-992-1_15  
Tropical clawed frog   Nigerian H line   31783   Saito S, Nakatsuka K, Takahashi K, Fukuta N, Imagawa T, Ohta T, Tominaga M.   Analysis of transient receptor potential ankyrin 1 (TRPA1) in frogs and lizards illuminates both nociceptive heat and chemical sensitivities and coexpression with TRP vanilloid 1 (TRPV1) in ancestral vertebrates.   J. Biol. Chem.   2012 -7 -14   287(36)   30743-54   22791718   10.1074/jbc.M112.362194  
Tropical clawed frog   Ivory Coast line   31780   Nakajima K, Fujimoto K, Yaoita Y.   Regulation of thyroid hormone sensitivity by differential expression of the thyroid hormone receptor during Xenopus metamorphosis.   Genes Cells   2012 -6 -13   17(8)   645-59   22686326   10.1111/j.1365-2443.2012.01614.x  
Tropical clawed frog   Ivory Coast line   31800   Ochi H, Tamai T, Nagano H, Kawaguchi A, Sudou N, Ogino H.   Evolution of a tissue-specific silencer underlies divergence in the expression of pax2 and pax8 paralogues.   Nat Commun   2012 -5 -24   3   848   22617288   10.1038/ncomms1851  
Tropical clawed frog   Ivory Coast line   31776   Sudou N, Yamamoto S, Ogino H, Taira M.   Dynamic in vivo binding of transcription factors to cis-regulatory modules of cer and gsc in the stepwise formation of the Spemann-Mangold organizer.   Development   2012 -4 -12   139(9)   1651-61   22492356   10.1242/dev.068395  
Tropical clawed frog   Nigerian H line, Ivory Coast line   31781   Okada M, Nakajima K, Yaoita Y.   Translational regulation by the 5'-UTR of thyroid hormone receptor α mRNA.   J. Biochem.   2012 -3 -13   151(5)   519-31   22406405   10.1093/jb/mvs026  
Tropical clawed frog   Nigerian H line   31782   Sakai K, Imamoto Y, Su CY, Tsukamoto H, Yamashita T, Terakita A, Yau KW, Shichida Y.   Photochemical nature of parietopsin.   Biochemistry   2012 -2 -7   51(9)   1933-41   22303823   10.1021/bi2018283  
Tropical clawed frog   X. tropicalis   12690   Sato K, Yamashita T, Ohuchi H, Shichida Y.   Vertebrate ancient-long opsin has molecular properties intermediate between those of vertebrate and invertebrate visual pigments.   Biochemistry   2011 -11 -10   50(48)   10484-90   22066464   10.1021/bi201212z  
Tropical clawed frog     11950   Saito S, Fukuta N, Shingai R, Tominaga M.   Evolution of vertebrate transient receptor potential vanilloid 3 channels: opposite temperature sensitivity between mammals and western clawed frogs.   PLoS Genet.   2011 -4 -15   7(4)   e1002041   21490957   10.1371/journal.pgen.1002041  
Tropical clawed frog     11951   Hikosaka A, Nishimura K, Hikosaka-Katayama T, Kawahara A.   Recent transposition activity of Xenopus T2 family miniature inverted-repeat transposable elements.   Mol. Genet. Genomics   2011 -1 -15   285(3)   219-24   21234602   10.1007/s00438-010-0599-3  
Tropical clawed frog     11952   Nejigane S, Haramoto Y, Okuno M, Takahashi S, Asashima M.   The transcriptional coactivators Yap and TAZ are expressed during early Xenopus development.   Int. J. Dev. Biol.   2010 -10 -28   55(1)   121-6   20979024   10.1387/ijdb.103130sn  
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