論文 - 詳細
RRC ID | 34260 |
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著者 | Okazaki K, Iino T, Kuroda Y, Taguchi K, Takahashi H, Ohwada T, Tsurumaru H, Okubo T, Minamisawa K, Ikeda S. |
タイトル | An assessment of the diversity of culturable bacteria from main root of sugar beet. |
ジャーナル | Microbes Environ |
Abstract |
The partial sequences of the 16S rRNA genes of 531 bacteria isolated from the main root of the sugar beet (Beta vulgaris L.) were determined and subsequently grouped into 155 operational taxonomic units by clustering analysis (≥99% identity). The most abundant phylum was Proteobacteria (72.5-77.2%), followed by Actinobacteria (9.8-16.6%) and Bacteroidetes (4.3-15.4%). Alphaproteobacteria (46.7-64.8%) was the most dominant class within Proteobacteria. Four strains belonging to Verrucomicrobia were also isolated. Phylogenetic analysis revealed that the Verrucomicrobia bacterial strains were closely related to Haloferula or Verrucomicrobium. |
巻・号 | 29(2) |
ページ | 220-3 |
公開日 | 2014-1-1 |
DOI | 10.1264/jsme2.me13182 |
PII | DN/JST.JSTAGE/jsme2/ME13182 |
PMID | 24789987 |
PMC | PMC4103529 |
MeSH | Actinobacteria / classification* Actinobacteria / genetics Actinobacteria / isolation & purification Alphaproteobacteria / classification Alphaproteobacteria / genetics Alphaproteobacteria / isolation & purification Bacteroidetes / classification* Bacteroidetes / genetics Bacteroidetes / isolation & purification Beta vulgaris / microbiology* Biodiversity Cluster Analysis DNA, Bacterial / chemistry DNA, Bacterial / genetics DNA, Ribosomal / chemistry DNA, Ribosomal / genetics Molecular Sequence Data Phylogeny Plant Roots / microbiology Proteobacteria / classification* Proteobacteria / genetics Proteobacteria / isolation & purification RNA, Ribosomal, 16S / genetics Sequence Analysis, DNA |
IF | 2.575 |
引用数 | 9 |
WOS 分野 | BIOTECHNOLOGY & APPLIED MICROBIOLOGY MICROBIOLOGY |
リソース情報 | |
一般微生物 | JCM 18780 JCM 18781 JCM 18782 |