RRC ID 34260
著者 Okazaki K, Iino T, Kuroda Y, Taguchi K, Takahashi H, Ohwada T, Tsurumaru H, Okubo T, Minamisawa K, Ikeda S.
タイトル An assessment of the diversity of culturable bacteria from main root of sugar beet.
ジャーナル Microbes Environ
Abstract The partial sequences of the 16S rRNA genes of 531 bacteria isolated from the main root of the sugar beet (Beta vulgaris L.) were determined and subsequently grouped into 155 operational taxonomic units by clustering analysis (≥99% identity). The most abundant phylum was Proteobacteria (72.5-77.2%), followed by Actinobacteria (9.8-16.6%) and Bacteroidetes (4.3-15.4%). Alphaproteobacteria (46.7-64.8%) was the most dominant class within Proteobacteria. Four strains belonging to Verrucomicrobia were also isolated. Phylogenetic analysis revealed that the Verrucomicrobia bacterial strains were closely related to Haloferula or Verrucomicrobium.
巻・号 29(2)
ページ 220-3
公開日 2014-1-1
DOI 10.1264/jsme2.me13182
PII DN/JST.JSTAGE/jsme2/ME13182
PMID 24789987
PMC PMC4103529
MeSH Actinobacteria / classification* Actinobacteria / genetics Actinobacteria / isolation & purification Alphaproteobacteria / classification Alphaproteobacteria / genetics Alphaproteobacteria / isolation & purification Bacteroidetes / classification* Bacteroidetes / genetics Bacteroidetes / isolation & purification Beta vulgaris / microbiology* Biodiversity Cluster Analysis DNA, Bacterial / chemistry DNA, Bacterial / genetics DNA, Ribosomal / chemistry DNA, Ribosomal / genetics Molecular Sequence Data Phylogeny Plant Roots / microbiology Proteobacteria / classification* Proteobacteria / genetics Proteobacteria / isolation & purification RNA, Ribosomal, 16S / genetics Sequence Analysis, DNA
IF 2.575
引用数 9
WOS 分野 BIOTECHNOLOGY & APPLIED MICROBIOLOGY MICROBIOLOGY
リソース情報
一般微生物 JCM 18780 JCM 18781 JCM 18782