RRC ID 34368
著者 Iiyama K, Otao M, Mori K, Mon H, Lee JM, Kusakabe T, Tashiro K, Asano S, Yasunaga-Aoki C.
タイトル Phylogenetic relationship of Paenibacillus species based on putative replication origin regions and analysis of an yheCD-like sequence found in this region.
ジャーナル Biosci Biotechnol Biochem
Abstract To determine the phylogenetic relationship among Paenibacillus species, putative replication origin regions were compared. In the rsmG-gyrA region, gene arrangements in Paenibacillus species were identical to those of Bacillus species, with the exception of an open reading frame (orf14) positioned between gyrB and gyrA, which was observed only in Paenibacillus species. The orf14 product was homologous to the endospore-associated proteins YheC and YheD of Bacillus subtilis. Phylogenetic analysis based on the YheCD proteins suggested that Orf14 could be categorized into the YheC group. In the Paenibacillus genome, DnaA box clusters were found in rpmH-dnaA and dnaA-dnaN intergenic regions, known as box regions C and R, respectively; this localization was similar to that observed in B. halodurans. A phylogenetic tree based on the nucleotide sequences of the whole replication origin regions suggested that P. popilliae, P. thiaminolyticus, and P. dendritiformis are closely related species.
巻・号 78(5)
ページ 891-7
公開日 2014-1-1
DOI 10.1080/09168451.2014.905188
PMID 25035995
MeSH Amino Acid Sequence Bacterial Proteins / chemistry Bacterial Proteins / genetics* DNA Replication* Gene Order Genomics Molecular Sequence Data Paenibacillus / classification Paenibacillus / genetics* Phylogeny* Protein Structure, Secondary Sequence Analysis*
IF 1.516
WOS 分野 BIOCHEMISTRY & MOLECULAR BIOLOGY BIOTECHNOLOGY & APPLIED MICROBIOLOGY CHEMISTRY, APPLIED FOOD SCIENCE & TECHNOLOGY
リソース情報
一般微生物 JCM 8360