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Species Resource name RRC ID Author Title Journal Published Volume Pages Pubmed ID DOI
Barley   Barley seed samples, full length cDNA   36132   Sato K, Tanaka T, Shigenobu S, Motoi Y, Wu J, Itoh T.   Improvement of barley genome annotations by deciphering the Haruna Nijo genome.   DNA Res.   2016 -2   23(1)   21-8   26622062   10.1093/dnares/dsv033  
General Microbes   JCM15124, JCM 13650, JCM 14110, JCM 15639...   48224   Naito M, Ogura Y, Itoh T, Shoji M, Okamoto M, Hayashi T, Nakayama K   The complete genome sequencing of Prevotella intermedia strain OMA14 and a subsequent fine-scale, intra-species genomic comparison reveal an unusual amplification of conjugative and mobile transposons and identify a novel Prevotella-lineage-specific repeat.   DNA Res.   2016   23   11-19   26645327   10.1093/dnares/dsv032  
Algae   NIES-2104   37131   Shimura Y, Hirose Y, Misawa N, Osana Y, Katoh H, Yamaguchi H, Kawachi M.   Comparison of the terrestrial cyanobacterium Leptolyngbya sp. NIES-2104 and the freshwater Leptolyngbya boryana PCC 6306 genomes.   DNA Res.   2015 -12   22(6)   403-12   26494835   10.1093/dnares/dsv022  
Wheat   LPGKU2269   33229   Tanaka T, Kobayashi F, Joshi GP, Onuki R, Sakai H, Kanamori H, Wu J, Simkova H, Nasuda S, Endo TR, Hayakawa K, Doležel J, Ogihara Y, Itoh T, Matsumoto T, Handa H.   Next-generation survey sequencing and the molecular organization of wheat chromosome 6B.   DNA Res.   2014 -9 -16   21(2)   103-14   24086083   10.1093/dnares/dst041  
Mice   M. spretus(RBRC00208)   28690   Kono H, Tamura M, Osada N, Suzuki H, Abe K, Moriwaki K, Ohta K, Shiroishi T.   Prdm9 polymorphism unveils mouse evolutionary tracks.   DNA Res.   2014 -6   21(3)   315-26   24449848   10.1093/dnares/dst059  
Mice   MSM/Ms(RBRC00209), TgN(deGFP)18Imeg(RBRC00821),...   27769   Ikeda R, Shiura H, Numata K, Sugimoto M, Kondo M, Mise N, Suzuki M, Greally JM, Abe K.   Large, male germ cell-specific hypomethylated DNA domains with unique genomic and epigenomic features on the mouse X chromosome.   DNA Res.   2013 -12   20(6)   549-65   23861320   10.1093/dnares/dst030  
Tomato   TOMJPF00001(Micro-Tom), TOMJPF00008(Solanum pennellii),...   27304   Shirasawa K, Fukuoka H, Matsunaga H, Kobayashi Y, Kobayashi I, Hirakawa H, Isobe S, Tabata S.   Genome-wide association studies using single nucleotide polymorphism markers developed by re-sequencing of the genomes of cultivated tomato.   DNA Res.   2013 -12   20(6)   593-603   23903436   10.1093/dnares/dst033  
DNA material   pPyCAG-BstXI-IP (RDB07099)   36030   Hung SS, Wong RC, Sharov AA, Nakatake Y, Yu H, Ko MS.   Repression of global protein synthesis by Eif1a-like genes that are expressed specifically in the two-cell embryos and the transient Zscan4-positive state of embryonic stem cells.   DNA Res.   2013 -8   20(4)   391-402   23649898   10.1093/dnares/dst018  
Tomato   TOMJPF00001, TOMJPF00008, TOMJPF00009-1, ...   30505   Hirakawa H, Shirasawa K, Ohyama A, Fukuoka H, Aoki K, Rothan C, Sato S, Isobe S, Tabata S.   Genome-wide SNP genotyping to infer the effects on gene functions in tomato.   DNA Res.   2013 -6   20(3)   221-33   23482505   10.1093/dnares/dst005  
DNA material   Common marmoset cDNA library   28617   Tatsumoto S, Adati N, Tohtoki Y, Sakaki Y, Boroviak T, Habu S, Okano H, Suemizu H, Sasaki E, Satake M.   Development and characterization of cDNA resources for the common marmoset: one of the experimental primate models.   DNA Res.   2013 -6   20(3)   255-62   23543116   10.1093/dnares/dst007  
Wheat     25669   Iehisa JC, Shimizu A, Sato K, Nasuda S, Takumi S.   Discovery of high-confidence single nucleotide polymorphisms from large-scale de novo analysis of leaf transcripts of Aegilops tauschii, a wild wheat progenitor.   DNA Res.   2012 -12   19(6)   487-97   23125207   10.1093/dnares/dss028  
Algae   NIES-3377   30396   Kanesaki Y, Imamura S, Minoda A, Tanaka K.   External light conditions and internal cell cycle phases coordinate accumulation of chloroplast and mitochondrial transcripts in the red alga Cyanidioschyzon merolae.   DNA Res.   2012 -6   19(3)   289-303   22518007   10.1093/dnares/dss013  
Wheat   DNA clones   36109   Manickavelu A, Kawaura K, Oishi K, Shin-I T, Kohara Y, Yahiaoui N, Keller B, Abe R, Suzuki A, Nagayama T, Yano K, Ogihara Y.   Comprehensive functional analyses of expressed sequence tags in common wheat (Triticum aestivum).   DNA Res.   2012 -4   19(2)   165-77   22334568   10.1093/dnares/dss001  
Tomato   EST, TOMJPF00004(Ailsa Craig), TOMJPF00003(A...   7183   Shirasawa K, Isobe S, Hirakawa H, Asamizu E, Fukuoka H, Just D, Rothan C, Sasamoto S, Fujishiro T, Kishida Y, Kohara M, Tsuruoka H, Wada T, Nakamura Y, Sato S, Tabata S.   SNP discovery and linkage map construction in cultivated tomato.   DNA Res.   2010 -12   17(6)   381-91   21044984   10.1093/dnares/dsq024  
Wheat   CJ272808-CJ919993   6459   Manickavelu A, Kawaura K, Oishi K, Shin-I T, Kohara Y, Yahiaoui N, Keller B, Suzuki A, Yano K, Ogihara Y.   Comparative gene expression analysis of susceptible and resistant near-isogenic lines in common wheat infected by Puccinia triticina.   DNA Res.   2010 -8   17(4)   211-22   20360266   10.1093/dnares/dsq009  
Algae   NIES-39   20866   Fujisawa T, Narikawa R, Okamoto S, Ehira S, Yoshimura H, Suzuki I, Masuda T, Mochimaru M, Takaichi S, Awai K, Sekine M, Horikawa H, Yashiro I, Omata S, Takarada H, Katano Y, Kosugi H, Tanikawa S, Ohmori K, Sato N, Ikeuchi M, Fujita N, Ohmori M.   Genomic structure of an economically important cyanobacterium, Arthrospira (Spirulina) platensis NIES-39.   DNA Res.   2010 -4   17(2)   85-103   20203057   10.1093/dnares/dsq004  
Tomato   TOMJPF00001(Micro-Tom), LEFL2003DB10   6079   Ozaki S, Ogata Y, Suda K, Kurabayashi A, Suzuki T, Yamamoto N, Iijima Y, Tsugane T, Fujii T, Konishi C, Inai S, Bunsupa S, Yamazaki M, Shibata D, Aoki K.   Coexpression analysis of tomato genes and experimental verification of coordinated expression of genes found in a functionally enriched coexpression module.   DNA Res.   2010 -4   17(2)   105-16   20130013   10.1093/dnares/dsq002  
Lotus / Glycine   Lotus japonicus   4682   Ishida K, Niwa Y, Yamashino T, Mizuno T.   A genome-wide compilation of the two-component systems in Lotus japonicus.   DNA Res.   2009 -8   16(4)   237-47   19675111   10.1093/dnares/dsp012  
Barley   FLcDNAs, database   4634   Sato K, Shin-I T, Seki M, Shinozaki K, Yoshida H, Takeda K, Yamazaki Y, Conte M, Kohara Y.   Development of 5006 full-length CDNAs in barley: a tool for accessing cereal genomics resources.   DNA Res.   2009 -4   16(2)   81-9   19150987   10.1093/dnares/dsn034  
Algae   NIES-3377   30373   Fujiwara T, Misumi O, Tashiro K, Yoshida Y, Nishida K, Yagisawa F, Imamura S, Yoshida M, Mori T, Tanaka K, Kuroiwa H, Kuroiwa T.   Periodic gene expression patterns during the highly synchronized cell nucleus and organelle division cycles in the unicellular red alga Cyanidioschyzon merolae.   DNA Res.   2009 -2   16(1)   59-72   19147531   10.1093/dnares/dsn032  
Barley   FLcDNAs   11994   Kazuhiro Sato, Tadasu Shin-I, Motoaki Seki, Kazuo Shinozaki, Hideya Yoshida, Kazuyoshi Takeda, Yukiko Yamazaki, Matthieu Conte, Yuji Kohara   Development of 5006 Full-Length CDNAs in Barley: A Tool for Accessing Cereal Genomics Resources.   DNA Res.   2009   16(2)   81-89      
Lotus / Glycine     4388   Umezawa T, Sakurai T, Totoki Y, Toyoda A, Seki M, Ishiwata A, Akiyama K, Kurotani A, Yoshida T, Mochida K, Kasuga M, Todaka D, Maruyama K, Nakashima K, Enju A, Mizukado S, Ahmed S, Yoshiwara K, Harada K, Tsubokura Y, Hayashi M, Sato S, Anai T, Ishimoto M, Funatsuki H, Teraishi M, Osaki M, Shinano T, Akashi R, Sakaki Y, Yamaguchi-Shinozaki K, Shinozaki K.   Sequencing and analysis of approximately 40,000 soybean cDNA clones from a full-length-enriched cDNA library.   DNA Res.   2008 -12   15(6)   333-46   18927222   10.1093/dnares/dsn024  
Rice   W1934   3840   Lu T, Yu S, Fan D, Mu J, Shangguan Y, Wang Z, Minobe Y, Lin Z, Han B.   Collection and comparative analysis of 1888 full-length cDNAs from wild rice Oryza rufipogon Griff. W1943.   DNA Res.   2008 -10   15(5)   285-95   18687674   10.1093/dnares/dsn018  
Prokaryotes E. coli   KHK Collection   35769   Mizoguchi H, Sawano Y, Kato J, Mori H.   Superpositioning of deletions promotes growth of Escherichia coli with a reduced genome.   DNA Res.   2008 -10   15(5)   277-84   18753290   10.1093/dnares/dsn019  
Information   PEC   3772   Mizoguchi H, Sawano Y, Kato J, Mori H.   Superpositioning of deletions promotes growth of Escherichia coli with a reduced genome.   DNA Res.   2008 -10   15(5)   277-84   18753290   10.1093/dnares/dsn019  
Information   PEC   3766   Shimoda Y, Mitsui H, Kamimatsuse H, Minamisawa K, Nishiyama E, Ohtsubo Y, Nagata Y, Tsuda M, Shinpo S, Watanabe A, Kohara M, Yamada M, Nakamura Y, Tabata S, Sato S.   Construction of signature-tagged mutant library in Mesorhizobium loti as a powerful tool for functional genomics.   DNA Res.   2008 -10   15(5)   297-308   18658183   10.1093/dnares/dsn017  
Lotus / Glycine   Gifu B-129, Miyakojima MG-20   4678   Wang X, Sato S, Tabata S, Kawasaki S.   A high-density linkage map of Lotus japonicus based on AFLP and SSR markers.   DNA Res.   2008 -10   15(5)   323-32   18794159   10.1093/dnares/dsn022  
Lotus / Glycine   Lotus japonicus   4675   Sato S, Nakamura Y, Kaneko T, Asamizu E, Kato T, Nakao M, Sasamoto S, Watanabe A, Ono A, Kawashima K, Fujishiro T, Katoh M, Kohara M, Kishida Y, Minami C, Nakayama S, Nakazaki N, Shimizu Y, Shinpo S, Takahashi C, Wada T, Yamada M, Ohmido N, Hayashi M, Fukui K, Baba T, Nakamichi T, Mori H, Tabata S.   Genome structure of the legume, Lotus japonicus.   DNA Res.   2008 -8   15(4)   227-39   18511435   10.1093/dnares/dsn008  
General Microbes   JCM 1112   15633   Morita H, Toh H, Fukuda S, Horikawa H, Oshima K, Suzuki T, Murakami M, Hisamatsu S, Kato Y, Takizawa T, Fukuoka H, Yoshimura T, Itoh K, O'Sullivan DJ, McKay LL, Ohno H, Kikuchi J, Masaoka T, Hattori M.   Comparative genome analysis of Lactobacillus reuteri and Lactobacillus fermentum reveal a genomic island for reuterin and cobalamin production.   DNA Res.   2008 -6 -30   15(3)   151-61   18487258   10.1093/dnares/dsn009  
Prokaryotes B. subtilis   TMO310, TMO311, NED0100, NED0202, NED0802...   33710   Morimoto T, Kadoya R, Endo K, Tohata M, Sawada K, Liu S, Ozawa T, Kodama T, Kakeshita H, Kageyama Y, Manabe K, Kanaya S, Ara K, Ozaki K, Ogasawara N.   Enhanced recombinant protein productivity by genome reduction in Bacillus subtilis.   DNA Res.   2008 -4 -30   15(2)   73-81   18334513   10.1093/dnares/dsn002  
Wheat   IR130 ?, TACBOW0239(rye 6R addition )   3893   Tomita M, Shinohara K, Morimoto M.   Revolver is a new class of transposon-like gene composing the triticeae genome.   DNA Res.   2008 -2 -29   15(1)   49-62   18303044   10.1093/dnares/dsm029  
Lotus / Glycine   Misuzudaizu,Moshidou Gong 503   4677   Hisano H, Sato S, Isobe S, Sasamoto S, Wada T, Matsuno A, Fujishiro T, Yamada M, Nakayama S, Nakamura Y, Watanabe S, Harada K, Tabata S.   Characterization of the soybean genome using EST-derived microsatellite markers.   DNA Res.   2007 -12 -31   14(6)   271-81   18192281   10.1093/dnares/dsm025  
Algae   NIES-843   20779   Kaneko T, Nakajima N, Okamoto S, Suzuki I, Tanabe Y, Tamaoki M, Nakamura Y, Kasai F, Watanabe A, Kawashima K, Kishida Y, Ono A, Shimizu Y, Takahashi C, Minami C, Fujishiro T, Kohara M, Katoh M, Nakazaki N, Nakayama S, Yamada M, Tabata S, Watanabe MM.   Complete genomic structure of the bloom-forming toxic cyanobacterium Microcystis aeruginosa NIES-843.   DNA Res.   2007 -12 -31   14(6)   247-56   18192279   10.1093/dnares/dsm026  
Prokaryotes E. coli   ME9062 (BW25113), Keio collection, ASKA clones   35196   Niba ET, Naka Y, Nagase M, Mori H, Kitakawa M.   A genome-wide approach to identify the genes involved in biofilm formation in E. coli.   DNA Res.   2007 -12 -31   14(6)   237-46   18180259   10.1093/dnares/dsm024  
Lotus / Glycine   Misuzudaizu,Moshidou Gong 503   4665   Xia Z, Tsubokura Y, Hoshi M, Hanawa M, Yano C, Okamura K, Ahmed TA, Anai T, Watanabe S, Hayashi M, Kawai T, Hossain KG, Masaki H, Asai K, Yamanaka N, Kubo N, Kadowaki K, Nagamura Y, Yano M, Sasaki T, Harada K.   An integrated high-density linkage map of soybean with RFLP, SSR, STS, and AFLP markers using A single F2 population.   DNA Res.   2007 -12 -31   14(6)   257-69   18192280   10.1093/dnares/dsm027  
Human and Animal Cells   OLF-136 (RCB0184)   10779   Su F, Osada Y, Ekker M, Chevrette M, Shimizu A, Asakawa S, Shiohama A, Sasaki T, Shimizu N, Yamanaka T, Sasado T, Mitani H, Geisler R, Kondoh H, Furutani-Seiki M.   Radiation hybrid maps of Medaka chromosomes LG 12, 17, and 22.   DNA Res.   2007 -6 -30   14(3)   135-40   17591665   10.1093/dnares/dsm012  
Lotus / Glycine   MG-20   4666   Shimada N, Sato S, Akashi T, Nakamura Y, Tabata S, Ayabe S, Aoki T.   Genome-wide analyses of the structural gene families involved in the legume-specific 5-deoxyisoflavonoid biosynthesis of Lotus japonicus.   DNA Res.   2007 -2 -28   14(1)   25-36   17452423   10.1093/dnares/dsm004  
Lotus / Glycine   L: MG-20   2378   Sugiyama A, Shitan N, Sato S, Nakamura Y, Tabata S, Yazaki K.   Genome-wide analysis of ATP-binding cassette (ABC) proteins in a model legume plant, Lotus japonicus: comparison with Arabidopsis ABC protein family.   DNA Res.   2006 -10 -31   13(5)   205-28   17164256   10.1093/dnares/dsl013  
Prokaryotes E. coli   Mobile plasmid Collection   35770   Saka K, Tadenuma M, Nakade S, Tanaka N, Sugawara H, Nishikawa K, Ichiyoshi N, Kitagawa M, Mori H, Ogasawara N, Nishimura A.   A complete set of Escherichia coli open reading frames in mobile plasmids facilitating genetic studies.   DNA Res.   2005 -2 -28   12(1)   63-8   16106753    
Information   E.coli   1723   Saka K, Tadenuma M, Nakade S, Tanaka N, Sugawara H, Nishikawa K, Ichiyoshi N, Kitagawa M, Mori H, Ogasawara N, Nishimura A.   A complete set of Escherichia coli open reading frames in mobile plasmids facilitating genetic studies.   DNA Res.   2005 -2 -28   12(1)   63-8   16106753    
Information   Rice   1741   Jiang SY, Jasmin PX, Ting YY, Ramachandran S.   Genome-wide identification and molecular characterization of Ole_e_I, Allerg_1 and Allerg_2 domain-containing pollen-allergen-like genes in Oryza sativa.   DNA Res.   2005   12(3)   167-79   16303748   10.1093/dnares/dsi005  
Information     12280   Jiang SY, Jasmin PX, Ting YY, Ramachandran S.   Genome-wide identification and molecular characterization of Ole_e_I, Allerg_1 and Allerg_2 domain-containing pollen-allergen-like genes in Oryza sativa.   DNA Res.   2005   12(3)   167-79   16303748   10.1093/dnares/dsi005  
Rice   Oryzabase   36801   Jiang SY, Jasmin PX, Ting YY, Ramachandran S.   Genome-wide identification and molecular characterization of Ole_e_I, Allerg_1 and Allerg_2 domain-containing pollen-allergen-like genes in Oryza sativa.   DNA Res.   2005   12(3)   167-79   16303748   10.1093/dnares/dsi005  
Prokaryotes E. coli   ASKA Clone   33728   Kitagawa M, Ara T, Arifuzzaman M, Ioka-Nakamichi T, Inamoto E, Toyonaga H, Mori H.   Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research.   DNA Res.   2005   12(5)   291-9   16769691   10.1093/dnares/dsi012  
Human and Animal Cells     42670   Maeda K, Horikoshi T, Nakashima E, Miyamoto Y, Mabuchi A, Ikegawa S.   MATN and LAPTM are parts of larger transcription units produced by intergenic splicing: intergenic splicing may be a common phenomenon.   DNA Res.   2005   12(5)   365-72   16769693   10.1093/dnares/dsi017  
Silkworms   EST database, p50T   516   Mita K, Kasahara M, Sasaki S, Nagayasu Y, Yamada T, Kanamori H, Namiki N, Kitagawa M, Yamashita H, Yasukochi Y, Kadono-Okuda K, Yamamoto K, Ajimura M, Ravikumar G, Shimomura M, Nagamura Y, Shin-I T, Abe H, Shimada T, Morishita S, Sasaki T.   The genome sequence of silkworm, Bombyx mori.   DNA Res.   2004 -5 -15   11(1)   27-35   15141943    
Algae   NIES-3377   29674   Maruyama S, Misumi O, Ishii Y, Asakawa S, Shimizu A, Sasaki T, Matsuzaki M, Shin-i T, Nozaki H, Kohara Y, Shimizu N, Kuroiwa T.   The minimal eukaryotic ribosomal DNA units in the primitive red alga Cyanidioschyzon merolae.   DNA Res.   2004 -4 -30   11(2)   83-91   15449541    
Lotus / Glycine   L: 64 TAC Clones   848   Kato T, Sato S, Nakamura Y, Kaneko T, Asamizu E, Tabata S.   Structural analysis of a Lotus japonicus genome. V. Sequence features and mapping of sixty-four TAC clones which cover the 6.4 mb regions of the genome.   DNA Res.   2003 -12 -31   10(6)   277-85   15029958    
Algae   NIES-67,NIES-68   20282   Sekimoto H, Tanabe Y, Takizawa M, Ito N, Fukumoto RH, Ito M.   Expressed sequence tags from the Closterium peracerosum-strigosum-littorale complex, a unicellular charophycean alga, in the sexual reproduction process.   DNA Res.   2003 -8 -31   10(4)   147-53   14621293    
Lotus / Glycine   L: 73 TAC Clones   847   Asamizu E, Kato T, Sato S, Nakamura Y, Kaneko T, Tabata S.   Structural analysis of a Lotus japonicus genome. IV. Sequence features and mapping of seventy-three TAC clones which cover the 7.5 mb regions of the genome.   DNA Res.   2003 -6 -30   10(3)   115-22   12886953    
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