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Species Resource name RRC ID Author Title Journal Published Volume Pages Pubmed ID DOI
General Microbes   JCM 17850   48498   Ishii S, Joikai K, Otsuka S, Senoo K, Okabe S.   Denitrification and Nitrate-Dependent Fe(II) Oxidation in Various Pseudogulbenkiania Strains.   Microbes Environ.   2016 -7 -20   31(3)   293-8   27431373   10.1264/jsme2.ME16001  
General Microbes   JCM 2831   48497   Minami T, Anda M, Mitsui H, Sugawara M, Kaneko T, Sato S, Ikeda S, Okubo T, Tsurumaru H, Minamisawa K.   Metagenomic Analysis Revealed Methylamine and Ureide Utilization of Soybean-Associated Methylobacterium.   Microbes Environ.   2016 -7 -20   31(3)   268-78   27431374   10.1264/jsme2.ME16035  
DNA material, General Microbes   Genomic DNA of Syntrophomonas wolfei subsp. methylb...   47264   Narihiro T, Nobu MK, Tamaki H, Kamagata Y, Sekiguchi Y, Liu WT.   Comparative Genomics of Syntrophic Branched-Chain Fatty Acid Degrading Bacteria.   Microbes Environ.   2016 -7 -20   31(3)   288-92   27431485   10.1264/jsme2.ME16057  
General Microbes   JCM 7812, JCM 18981   48496   Ueoka N, Kouzuma A, Watanabe K.   Missing Iron-Oxidizing Acidophiles Highly Sensitive to Organic Compounds.   Microbes Environ.   2016 -7 -1   31(3)   244-8   27356527   10.1264/jsme2.ME16086  
General Microbes   JCM 7812   48499   Mitsunobu S, Zhu M, Takeichi Y, Ohigashi T, Suga H, Jinno M, Makita H, Sakata M, Ono K, Mase K, Takahashi Y.   Direct Detection of Fe(II) in Extracellular Polymeric Substances (EPS) at the Mineral-Microbe Interface in Bacterial Pyrite Leaching.   Microbes Environ.   2016 -3 -8   31(1)   63-9   26947441   10.1264/jsme2.ME15137  
General Microbes   JCM 3805   41261   Hirakata Y, Oshiki M, Kuroda K, Hatamoto M, Kubota K, Yamaguchi T, Harada H, Araki N.   Identification and Detection of Prokaryotic Symbionts in the Ciliate Metopus from Anaerobic Granular Sludge.   Microbes Environ.   2015 -12 -8   30(4)   335-8   26639580   10.1264/jsme2.ME15154  
General Microbes   JCM 15093,  JCM 15548, JCM 21142, JCM 140...   40911   Inoue J, Oshima K, Suda W, Sakamoto M, Iino T, Noda S, Hongoh Y, Hattori M, Ohkuma M.   Distribution and evolution of nitrogen fixation genes in the phylum Bacteroidetes.   Microbes Environ.   2015 -3 -5   30(1)   44-50   25736980   10.1264/jsme2.ME14142  
General Microbes   JCM 12575   34330   Inami K, Kashiwa T, Kawabe M, Onokubo-Okabe A, Ishikawa N, Pérez ER, Hozumi T, Caballero LA, de Baldarrago FC, Roco MJ, Madadi KA, Peever TL, Teraoka T, Kodama M, Arie T.   The tomato wilt fungus Fusarium oxysporum f. sp. lycopersici shares common ancestors with nonpathogenic F. oxysporum isolated from wild tomatoes in the Peruvian Andes.   Microbes Environ.   2014 -6 -10   29(2)   200-10   24909710    
General Microbes   JCM 18780, JCM 18781, JCM 18782   34260   Okazaki K, Iino T, Kuroda Y, Taguchi K, Takahashi H, Ohwada T, Tsurumaru H, Okubo T, Minamisawa K, Ikeda S.   An assessment of the diversity of culturable bacteria from main root of sugar beet.   Microbes Environ.   2014 -5 -3   29(2)   220-3   24789987    
General Microbes   JCM 20089   34253   Chohnan S, Murase M, Kurikawa K, Higashi K, Ogata Y.   Antimicrobial activity of pantothenol against staphylococci possessing a prokaryotic type II pantothenate kinase.   Microbes Environ.   2014 -4 -25   29(2)   224-6   24759689    
General Microbes   JCM 18477   34198   Sakai M, Hosoda A, Ogura K, Ikenaga M.   The growth of Steroidobacter agariperforans sp. nov., a novel agar-degrading bacterium isolated from soil, is enhanced by the diffusible metabolites produced by bacteria belonging to Rhizobiales.   Microbes Environ.   2014 -3 -14   29(1)   89-95   24621511    
General Microbes   JCM 7371, JCM 7452, JCM 11777   34134   Hayashi H, Kurusu Y.   DNA regions responsible for maintenance of Shingobium plasmid pYAN-2.   Microbes Environ.   2014 -1 -21   29(1)   96-9   24441514    
General Microbes   JCM 17640   29489   Itoh Y, Sakagami K, Uchino Y, Boonmak C, Oriyama T, Tojo F, Matsumoto M, Morikawa M.   Isolation and characterization of a thermotolerant ammonia-oxidizing bacterium Nitrosomonas sp. JPCCT2 from a thermal power station.   Microbes Environ.   2013 -11 -22   28(4)   432-5   24256971    
General Microbes   JCM 9820   29490   Kawaichi S, Ito N, Yoshida T, Sako Y.   Bacterial and archaeal diversity in an iron-rich coastal hydrothermal field in Yamagawa, Kagoshima, Japan.   Microbes Environ.   2013 -11 -22   28(4)   405-13   24256999    
General Microbes   JCM 21315   29450   Itoh H, Ishii S, Shiratori Y, Oshima K, Otsuka S, Hattori M, Senoo K.   Seasonal transition of active bacterial and archaeal communities in relation to water management in paddy soils.   Microbes Environ.   2013 -9 -6   28(3)   370-80   24005888    
General Microbes   JCM 10742   29449   Lorliam W, Akaracharanya A, Suzuki M, Ohkuma M, Tanasupawat S.   Diversity and fermentation products of xylose-utilizing yeasts isolated from buffalo feces in Thailand.   Microbes Environ.   2013 -9 -6   28(3)   354-60   24005843    
General Microbes   JCM 15506   27708   Nunoura T, Hirai M, Miyazaki M, Kazama H, Makita H, Hirayama H, Furushima Y, Yamamoto H, Imachi H, Takai K.   Isolation and characterization of a thermophilic, obligately anaerobic and heterotrophic marine Chloroflexi bacterium from a Chloroflexi-dominated microbial community associated with a Japanese shallow hydrothermal system, and proposal for Thermomarinilinea lacunofontalis gen. nov., sp. nov.   Microbes Environ.   2013 -5 -15   28(2)   228-35   23666537    
Lotus / Glycine   L. japonicus MG-20   30988   Hashimoto M, Tanishita Y, Suda Y, Murakami E, Nagata M, Kucho K, Abe M, Uchiumi T.   Characterization of nitric oxide-inducing lipid A derived from Mesorhizobium loti lipopolysaccharide.   Microbes Environ.   2012 -10 -13   27(4)   490-6   23059724    
Algae   NIES-843   21726   Hasegawa M, Nishizawa A, Tsuji K, Kimura S, Harada K.   Volatile organic compounds derived from 2-keto-acid decarboxylase in Microcystis aeruginosa.   Microbes Environ.   2012 -10 -11   27(4)   525-8   23047148    
General Microbes   JCM 10513, JCM 10514, JCM 10515, JCM 1051...   19097   Thong-On A, Suzuki K, Noda S, Inoue J, Kajiwara S, Ohkuma M.   Isolation and characterization of anaerobic bacteria for symbiotic recycling of uric acid nitrogen in the gut of various termites.   Microbes Environ.   2012 -7 -14   27(2)   186-92   22791052    
General Microbes   JCM 18004   47609   Okubo T, Tsukui T, Maita H, Okamoto S, Oshima K, Fujisawa T, Saito A, Futamata H, Hattori R, Shimomura Y, Haruta S, Morimoto S, Wang Y, Sakai Y, Hattori M, Aizawa S, Nagashima KV, Masuda S, Hattori T, Yamashita A, Bao Z, Hayatsu M, Kajiya-Kanegae H, Yoshinaga I, Sakamoto K, Toyota K, Nakao M, Kohara M, Anda M, Niwa R, Jung-Hwan P, Sameshima-Saito R, Tokuda S, Yamamoto S, Yamamoto S, Yokoyama T, Akutsu T, Nakamura Y, Nakahira-Yanaka Y, Takada Hoshino Y, Hirakawa H, Mitsui H, Terasawa K, Itakura M, Sato S, Ikeda-Ohtsubo W, Sakakura N, Kaminuma E, Minamisawa K.   Complete genome sequence of Bradyrhizobium sp. S23321: insights into symbiosis evolution in soil oligotrophs.   Microbes Environ.   2012 -3 -29   27(3)   306-15   22452844    
Prokaryotes E. coli   ME7985(W3110)   35437   Nonaka L, Maruyama F, Miyamoto M, Miyakoshi M, Kurokawa K, Masuda M.   Novel conjugative transferable multiple drug resistance plasmid pAQU1 from Photobacterium damselae subsp. damselae isolated from marine aquaculture environment.   Microbes Environ.   2012 -3 -27   27(3)   263-72   22446310    
General Microbes   JCM 16669   15983   Westerholm M, Müller B, Arthurson V, Schnürer A.   Changes in the acetogenic population in a mesophilic anaerobic digester in response to increasing ammonia concentration.   Microbes Environ.   2011 -8 -27   26(4)   347-53   21869569    
General Microbes   JCM 2802   15982   Anda M, Ikeda S, Eda S, Okubo T, Sato S, Tabata S, Mitsui H, Minamisawa K.   Isolation and genetic characterization of Aurantimonas and Methylobacterium strains from stems of hypernodulated soybeans.   Microbes Environ.   2011 -4 -23   26(2)   172-80   21512309    
Lotus / Glycine   M. loti, L. japonicus (Gifu B-129)   30968   Borjigin N, Furukawa K, Shimoda Y, Tabata S, Sato S, Eda S, Minamisawa K, Mitsui H.   Identification of Mesorhizobium loti genes relevant to symbiosis by using signature-tagged mutants.   Microbes Environ.   2011 -4 -20   26(2)   165-71   21502733    
Lotus / Glycine   L. japonicus MG-20   30970   Ishihara H, Koriyama H, Osawa A, Zehirov G, Yamaura M, Kucho K, Abe M, Higashi S, Kondorosi E, Mergaert P, Uchiumi T.   Characteristics of bacteroids in indeterminate nodules of the leguminous tree Leucaena glauca.   Microbes Environ.   2011 -4 -20   26(2)   156-9   21502734    
Lotus / Glycine   L. japonicus MG-20   30969   Masunaka A, Hyakumachi M, Takenaka S.   Plant growth-promoting fungus, Trichoderma koningi suppresses isoflavonoid phytoalexin vestitol production for colonization on/in the roots of Lotus japonicus.   Microbes Environ.   2011 -4 -20   26(2)   128-34   21502738    
General Microbes   JCM 1494   11525   Ryuda N, Hashimoto T, Ueno D, Inoue K, Someya T.   Visualization and direct counting of individual denitrifying bacterial cells in soil by nirK-targeted direct in situ PCR.   Microbes Environ.   2011 -4 -14   26(1)   74-80   21487206    
General Microbes   JCM 13284   7149   Daisuke Mayumi, Takuya Yoshimoto, Hiroo Uchiyama, Nobuhiko Nomura and Toshiaki Nakajima-Kambe   Seasonal Change in Methanotrophic Diversity and Populations in a Rice Field Soil Assessed by DNA-Stable Isotope Probing and Quantitative Real-Time PCR   Microbes Environ.   2010   25   156-163      
Algae   NIES-90,NIES-91,NIES-98,NIES-99,NIES-101,...   21690   Kuno S, Yoshida T, Kamikawa R, Hosoda N, Sako Y.   The distribution of a phage-related insertion sequence element in the cyanobacterium, Microcystis aeruginosa.   Microbes Environ.   2010 -1 -1   25(4)   295-301   21576885    
Algae   NIES-227   21670   Ueda H, Otsuka S, Senoo K.   Bacterial communities constructed in artificial consortia of bacteria and Chlorella vulgaris.   Microbes Environ.   2010 -1 -1   25(1)   36-40   21576850    
Algae   NIES-298   21689   Yoshida M, Yoshida T, Yoshida-Takashima Y, Kashima A, Hiroishi S.   Real-time PCR detection of host-mediated cyanophage gene transcripts during infection of a natural Microcystis aeruginosa population.   Microbes Environ.   2010 -1 -1   25(3)   211-5   21576874    
Algae   NIES-512   27843   Ohko Y, Nagao Y, Okano K, Sugiura N, Fukuda A, Yang Y, Negishi N, Takeuchi M, Hanada S.   Prevention of Phormidium tenue Biofilm Formation by TiO(2) Photocatalysis.   Microbes Environ.   2009 -1 -1   24(3)   241-5   21566379    
General Microbes   JCM13061   5724   Kazuhiro Nonaka, Hiroyuki Ohta, Yoshinori Sato and Keiichi Hosokawa   Utilization of Phenylpropanoids by Pseudomonas putida Soil Isolates and Its Probable Taxonomic Significance   Microbes Environ.   2008   23   360-364      
Algae   NIES-946,NIES-961,NIES-604,NIES-204,NIES-611,...   21687   Tomioka N, Nagai T, Kawasaki T, Imai A, Matsushige K, Kohata K.   Quantification of microcystis in a eutrophic lake by simple DNA extraction and SYBR green real-time PCR.   Microbes Environ.   2008 -1 -1   23(4)   306-12   21558723    
General Microbes   JCM6821, JCM6822, JCM6823, JCM6824, JCM6827...   5723   Wataru Kitagawa and Tomohiro Tamura   Three Types of Antibiotics Produced from Rhodococcus erythropolis Strains   Microbes Environ.   2008   23   167-171      
General Microbes   JCM1298, JCM1292, JCM5826, JCM1131, JCM10261...   5720   Hidetoshi Morita, Tomomi Kuwahara, Kenshiro Ohshima, Hiroyuki Sasamoto, Kikuji Itoh, Masahira Hattori, Tetsuya Hayashi and Hideto Takami   An Improved DNA Isolation Method for Metagenomic Analysis of the Microbial Flora of the Human Intestine   Microbes Environ.   2007   22   214-222      
General Microbes   JCM6892, JCM5490, JCM9216, JCM2836, JCM8511...   5718   Hidetoshi Urakawa, Junpei Matsumoto, Tatsuhiko Hoshino and Satoshi Tsuneda   Direct Profiling of rRNA in Saline Wastewater Treatment Samples Using an Oligonucleotide Microarray   Microbes Environ.   2007   22   116-122      
General Microbes   JCM7914, JCM7913, JCM10429   5719   Osamu Koyama, Akira Manome, Mayu Okubo, Toyokazu Yokomaku and Hideo Tanaka   Necrosis Gene-Based Monitoring and Control of Potato Scab Disease   Microbes Environ.   2007   22   123-127      
Prokaryotes E. coli   CV-76(XL1-blue)   3238   Iwaki, H., Saji, H., Abe, K. and Hasegawa, Y.   Cloning and sequence analysis of the 4-hydroxybenzoate 3-hydroxylase gene from a cyclohexanecarboxylate-degrading gram-positive bacterium,"Corynebacterium cyclohexanicum" strain ATCC 51369.   Microbes Environ.   2005   20(3)   144-150      
Algae   NIES-102   35909   Takamura, Y., Yamada, T., Kimoto, A., Kanehama, N., Tanaka, T., Nakadaira, S., Yagi, O.   Growth inhibiton of Microcystis cyanobacteria by L-lysine and disappearance of natural Microcystis blooms with spraying.   Microbes Environ.   2004   19,   31-39.      
Algae   NIES-227,NIES-545,NIES-35   48639   Ando, T., Otsuka, S., Nishiyama, M., Sendo, K., Watanabe, M. M., Matsumoto, S.   Toxic effects of dichloromethane and trichloroethlene on the growth of planktonic green algae, Chlorella vulgaris NIES227, Selenastrum capricornutum NIES35, and Volvulina steinii NIES545.   Microbes Environ.   2003   18,   43-46.      
Algae   NIES-2109   37312   Katoh, H., Shiga, S., Nakahira, Y., Ohmori, M.   Isolation and characterization of drought-tolerant cyanobacterium Nostoc sp. HK-01.   Microbes Environ.   2003   18,   82-88.      
Algae   NIES-472,NIES-614,NIES-474   38035   Yoshida, T., Nakai, R., Seto, H., Wang, M.-K., Iwataki, M., Hiroishi, S.   Production of superoxide anion and hydrogen peroxide associated with cell growth of Chattonella antiqua.   Microbes Environ.   2003   18,   216-222.      
Algae   NIES-105,NIES-106,NIES-108,NIES-109,NIES-110,...   37993   Yoshida, T., Yuki, Y., Lei, S., Chinen, H., Yoshida, M., Kondo, R., Hiroishi, S.   Quantitative detection of toxic strains of the cyanobacterial genus Microcystis by competitive PCR.   Microbes Environ.   2003   18,   16-23.      
Algae   NIES-1   29542   Maki, T., Imai, I.   Effects of harmful dinoflagellate Heterocapsa circularisquama cells on the growth of intracellular bacteria.   Microbes Environ.   2001   16,   234-239.      
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