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Species Resource name RRC ID Author Title Journal Published Volume Pages Pubmed ID DOI
Arabidopsis / Cultured plant cells, genes   rpc00008   48768   Kobayashi A, Miura S, Kozaki A.   INDETERMINATE DOMAIN PROTEIN binding sequences in the 5'-untranslated region and promoter of the SCARECROW gene play crucial and distinct roles in regulating SCARECROW expression in roots and leaves.   Plant Mol. Biol.   2017 -3 -23   94(1-2)   1-13   28324206   10.1007/s11103-016-0578-0  
Algae   NIES-1332   47412   Zienkiewicz M, Krupnik T, Drożak A, Golke A, Romanowska E.   Transformation of the Cyanidioschyzon merolae chloroplast genome: prospects for understanding chloroplast function in extreme environments.   Plant Mol. Biol.   2016 -11 -1   93(1-2)   171-183   27796719   10.1007/s11103-016-0554-8  
Information   Oryzabase   47259   Sakuraba Y, Han SH, Yang HJ, Piao W, Paek NC.   Mutation of Rice Early Flowering3.1 (OsELF3.1) delays leaf senescence in rice.   Plant Mol. Biol.   2016 -7 -6   92(1-2)   223-34   27380315   10.1007/s11103-016-0507-2  
Arabidopsis / Cultured plant cells, genes   pst12013   36893   Clavel M, Pélissier T, Montavon T, Tschopp MA, Pouch-Pélissier MN, Descombin J, Jean V, Dunoyer P, Bousquet-Antonelli C, Deragon JM.   Evolutionary history of double-stranded RNA binding proteins in plants: identification of new cofactors involved in easiRNA biogenesis.   Plant Mol. Biol.   2016 -2 -10   91(1-2)   131-47   26858002   10.1007/s11103-016-0448-9  
Arabidopsis / Cultured plant cells, genes   pst16145   36745   Kitamura S, Oono Y, Narumi I.   Arabidopsis pab1, a mutant with reduced anthocyanins in immature seeds from banyuls, harbors a mutation in the MATE transporter FFT.   Plant Mol. Biol.   2015 -11 -27   90(1-2)   7-18   26608698   10.1007/s11103-015-0389-8  
Rice     35122   Miyazaki S, Sato Y, Asano T, Nagamura Y, Nonomura K.   Rice MEL2, the RNA recognition motif (RRM) protein, binds in vitro to meiosis-expressed genes containing U-rich RNA consensus sequences in the 3'-UTR.   Plant Mol. Biol.   2015 -9 -1   89(3)   293-307   26319516   10.1007/s11103-015-0369-z  
Lotus / Glycine   L. japonicus MG-20   36716   Lai D, Pičmanová M, Abou Hachem M, Motawia MS, Olsen CE, Møller BL, Rook F, Takos AM.   Lotus japonicus flowers are defended by a cyanogenic β-glucosidase with highly restricted expression to essential reproductive organs.   Plant Mol. Biol.   2015 -8 -8   89(1-2)   21-34   26249044   10.1007/s11103-015-0348-4  
Wheat     36344   Takamatsu K, Iehisa JC, Nishijima R, Takumi S.   Comparison of gene expression profiles and responses to zinc chloride among inter- and intraspecific hybrids with growth abnormalities in wheat and its relatives.   Plant Mol. Biol.   2015 -6 -18   88(4-5)   487-502   26081164   10.1007/s11103-015-0338-6  
Arabidopsis / Cultured plant cells, genes   pst00015, pst12661   30776   Karim S, Alezzawi M, Garcia-Petit C, Solymosi K, Khan NZ, Lindquist E, Dahl P, Hohmann S, Aronsson H.   A novel chloroplast localized Rab GTPase protein CPRabA5e is involved in stress, development, thylakoid biogenesis and vesicle transport in Arabidopsis.   Plant Mol. Biol.   2013 -12 -18   84(6)   675-92   24337800   10.1007/s11103-013-0161-x  
Arabidopsis / Cultured plant cells, genes   pda00743, pda02633, pda07220   30756   Dolze E, Chigri F, Höwing T, Hierl G, Isono E, Vothknecht UC, Gietl C.   Calmodulin-like protein AtCML3 mediates dimerization of peroxisomal processing protease AtDEG15 and contributes to normal peroxisome metabolism.   Plant Mol. Biol.   2013 -8 -15   83(6)   607-24   23943091   10.1007/s11103-013-0112-6  
Arabidopsis / Cultured plant cells, genes   pdp23453   21128   Vivancos J, Spinner L, Mazubert C, Charlot F, Paquet N, Thareau V, Dron M, Nogué F, Charon C.   The function of the RNA-binding protein TEL1 in moss reveals ancient regulatory mechanisms of shoot development.   Plant Mol. Biol.   2011 -12 -16   78(4-5)   323-36   22170036   10.1007/s11103-011-9867-9  
Arabidopsis / Cultured plant cells, genes   rpc00008   15321   Ogasawara H, Kaimi R, Colasanti J, Kozaki A.   Activity of transcription factor JACKDAW is essential for SHR/SCR-dependent activation of SCARECROW and MAGPIE and is modulated by reciprocal interactions with MAGPIE, SCARECROW and SHORT ROOT.   Plant Mol. Biol.   2011 -9 -22   77(4-5)   489-99   21935722   10.1007/s11103-011-9826-5  
Arabidopsis / Cultured plant cells, genes   pda04818, pda09962, pda06592, pda08063,...   15316   Shahriari M, Richter K, Keshavaiah C, Sabovljevic A, Huelskamp M, Schellmann S.   The Arabidopsis ESCRT protein-protein interaction network.   Plant Mol. Biol.   2011 -3 -29   76(1-2)   85-96   21442383   10.1007/s11103-011-9770-4  
Rice   野生稲   12780   Fujino K, Sekiguchi H.   Origins of functional nucleotide polymorphisms in a major quantitative trait locus, qLTG3-1, controlling low-temperature germinability in rice.   Plant Mol. Biol.   2010 -10 -21   75(1-2)   1-10   20960223   10.1007/s11103-010-9697-1  
Arabidopsis / Cultured plant cells, genes   pda11685, pda11076, pdy22231, pdz88907, pda19470   6277   Jia F, Gampala SS, Mittal A, Luo Q, Rock CD.   Cre-lox univector acceptor vectors for functional screening in protoplasts: analysis of Arabidopsis donor cDNAs encoding ABSCISIC ACID INSENSITIVE1-like protein phosphatases.   Plant Mol. Biol.   2009 -6 -6   70(6)   693-708   19499346   10.1007/s11103-009-9502-1  
Wheat   LPGKU2269(Chinese Spring), LPGKU2039(CS Ditelosomic 7BS)   4908   Yamada K, Saraike T, Shitsukawa N, Hirabayashi C, Takumi S, Murai K.   Class D and B(sister) MADS-box genes are associated with ectopic ovule formation in the pistil-like stamens of alloplasmic wheat (Triticum aestivum L.).   Plant Mol. Biol.   2009 -6 -3   71(1-2)   1-14   19488678   10.1007/s11103-009-9504-z  
Arabidopsis / Cultured plant cells, genes   pdp31463   4820   Komatsu K, Nishikawa Y, Ohtsuka T, Taji T, Quatrano RS, Tanaka S, Sakata Y.   Functional analyses of the ABI1-related protein phosphatase type 2C reveal evolutionarily conserved regulation of abscisic acid signaling between Arabidopsis and the moss Physcomitrella patens.   Plant Mol. Biol.   2009 -3 -7   70(3)   327-40   19266168   10.1007/s11103-009-9476-z  
Wheat   CS(LPGKU2269)?, Langdon(LPGKU2272)?, KU-199-1...   3897   Morimoto R, Nishioka E, Murai K, Takumi S.   Functional conservation of wheat orthologs of maize rough sheath1 and rough sheath2 genes.   Plant Mol. Biol.   2008 -11 -1   69(3)   273-85   18974935   10.1007/s11103-008-9422-5  
Lotus / Glycine   L. japonicus, Gifu and MG20   4679   Fukai E, Dobrowolska AD, Madsen LH, Madsen EB, Umehara Y, Kouchi H, Hirochika H, Stougaard J.   Transposition of a 600 thousand-year-old LTR retrotransposon in the model legume Lotus japonicus.   Plant Mol. Biol.   2008 -9 -20   68(6)   653-63   18802778   10.1007/s11103-008-9397-2  
Arabidopsis / Cultured plant cells, genes   pda12916, pdx00107   4018   Firlej-Kwoka E, Strittmatter P, Soll J, Bölter B.   Import of preproteins into the chloroplast inner envelope membrane.   Plant Mol. Biol.   2008 -8 -16   68(4-5)   505-19   18704693   10.1007/s11103-008-9387-4  
Arabidopsis / Cultured plant cells, genes   pst16033, pst13527, pst12157, pst15116,...   4007   Lee MH, Kim B, Song SK, Heo JO, Yu NI, Lee SA, Kim M, Kim DG, Sohn SO, Lim CE, Chang KS, Lee MM, Lim J.   Large-scale analysis of the GRAS gene family in Arabidopsis thaliana.   Plant Mol. Biol.   2008 -5 -27   67(6)   659-70   18500650   10.1007/s11103-008-9345-1  
Arabidopsis / Cultured plant cells, genes   pda11516   3112   Attallah CV, Welchen E, Pujol C, Bonnard G, Gonzalez DH.   Characterization of Arabidopsis thaliana genes encoding functional homologues of the yeast metal chaperone Cox19p, involved in cytochrome c oxidase biogenesis.   Plant Mol. Biol.   2007 -8 -23   65(3)   343-55   17712601   10.1007/s11103-007-9224-1  
Arabidopsis / Cultured plant cells, genes   pda01225   3105   Ajjawi I, Rodriguez Milla MA, Cushman J, Shintani DK.   Thiamin pyrophosphokinase is required for thiamin cofactor activation in Arabidopsis.   Plant Mol. Biol.   2007 -7 -6   65(1-2)   151-62   17611796   10.1007/s11103-007-9205-4  
Arabidopsis / Cultured plant cells, genes   pda08299   3084   Zolman BK, Nyberg M, Bartel B.   IBR3, a novel peroxisomal acyl-CoA dehydrogenase-like protein required for indole-3-butyric acid response.   Plant Mol. Biol.   2007 -2 -6   64(1-2)   59-72   17277896   10.1007/s11103-007-9134-2  
Information   Oryzabase   12490   Miyao A, Iwasaki Y, Kitano H, Itoh J, Maekawa M, Murata K, Yatou O, Nagato Y, Hirochika H.   A large-scale collection of phenotypic data describing an insertional mutant population to facilitate functional analysis of rice genes.   Plant Mol. Biol.   2006 -12 -21   63(5)   625-35   17180734   10.1007/s11103-006-9118-7  
Arabidopsis / Cultured plant cells, genes   pdp21409, pdp24095, pdp16421, pdp18994,...   3075   Roberts AW, Bushoven JT.   The cellulose synthase (CESA) gene superfamily of the moss Physcomitrella patens.   Plant Mol. Biol.   2006 -9 -29   63(2)   207-19   17006591   10.1007/s11103-006-9083-1  
Morning Glory   アサガオ   2173   Iwasaki M, Nitasaka E.   The FEATHERED gene is required for polarity establishment in lateral organs especially flowers of the Japanese morning glory (I pomoea nil ).   Plant Mol. Biol.   2006 -9 -15   62(6)   913-25   16972166   10.1007/s11103-006-9066-2  
Arabidopsis / Cultured plant cells, genes   pdp01778, pdp04463, pdp17834, pdp21517,...   4049   Lunde C, Baumann U, Shirley NJ, Drew DP, Fincher GB.   Gene structure and expression pattern analysis of three monodehydroascorbate reductase (Mdhar) genes in Physcomitrella patens: implications for the evolution of the MDHAR family in plants.   Plant Mol. Biol.   2006 -1 -24   60(2)   259-75   16429263   10.1007/s11103-005-3881-8  
Algae   NIES-3377   30390   Minoda A, Nagasawa K, Hanaoka M, Horiuchi M, Takahashi H, Tanaka K.   Microarray profiling of plastid gene expression in a unicellular red alga, Cyanidioschyzon merolae.   Plant Mol. Biol.   2005 -10 -20   59(3)   375-85   16235106   10.1007/s11103-005-0182-1  
Rice, Information   W0106, Oryzabase   3669   Wing RA, Ammiraju JS, Luo M, Kim H, Yu Y, Kudrna D, Goicoechea JL, Wang W, Nelson W, Rao K, Brar D, Mackill DJ, Han B, Soderlund C, Stein L, SanMiguel P, Jackson S.   The oryza map alignment project: the golden path to unlocking the genetic potential of wild rice species.   Plant Mol. Biol.   2005 -10 -12   59(1)   53-62   16217601   10.1007/s11103-004-6237-x  
Wheat   TAC library   709   Devos KM, Beales J, Ogihara Y, Doust AN.   Comparative sequence analysis of the phytochrome C gene and its upstream region in allohexaploid wheat reveals new data on the evolution of its three constituent genomes.   Plant Mol. Biol.   2005 -9 -15   58(5)   625-41   16158239   10.1007/s11103-005-6801-z  
Information   Rice   1740   Jiang SY, Cai M, Ramachandran S.   The Oryza sativa no pollen (Osnop) gene plays a role in male gametophyte development and most likely encodes a C2-GRAM domain-containing protein.   Plant Mol. Biol.   2005 -6 -14   57(6)   835-53   15952069   10.1007/s11103-005-2859-x  
Rice   Oryzabase   36811   Jiang SY, Cai M, Ramachandran S.   The Oryza sativa no pollen (Osnop) gene plays a role in male gametophyte development and most likely encodes a C2-GRAM domain-containing protein.   Plant Mol. Biol.   2005 -6 -14   57(6)   835-53   15952069   10.1007/s11103-005-2859-x  
Wheat   KU-199-11, KU-105, KU-3636, KU-101-2, KU-101-3...   711   Morimoto R, Kosugi T, Nakamura C, Takumi S.   Intragenic diversity and functional conservation of the three homoeologous loci of the KN1-type homeobox gene Wknox1 in common wheat.   Plant Mol. Biol.   2005 -6 -14   57(6)   907-24   15952073   10.1007/s11103-005-3247-2  
Arabidopsis / Cultured plant cells, genes   pda08201   593   Leung KC, Li HY, Mishra G, Chye ML.   ACBP4 and ACBP5, novel Arabidopsis acyl-CoA-binding proteins with kelch motifs that bind oleoyl-CoA.   Plant Mol. Biol.   2004 -12 -18   55(2)   297-309   15604682   10.1007/s11103-004-0642-z  
Rice     36472   Lee S, Jung KH, An G, Chung YY.   Isolation and characterization of a rice cysteine protease gene, OsCP1, using T-DNA gene-trap system.   Plant Mol. Biol.   2004 -9 -10   54(5)   755-65   15356393   10.1023/B:PLAN.0000040904.15329.29  
Rice   d35?, d18?, Induced Mutation Lines?   667   Itoh H, Tatsumi T, Sakamoto T, Otomo K, Toyomasu T, Kitano H, Ashikari M, Ichihara S, Matsuoka M.   A rice semi-dwarf gene, Tan-Ginbozu (D35), encodes the gibberellin biosynthesis enzyme, ent-kaurene oxidase.   Plant Mol. Biol.   2004 -8 -19   54(4)   533-47   15316288   10.1023/B:PLAN.0000038261.21060.47  
Lotus / Glycine   L: MG-20, Gifu, cDNA   852   Asamizu E, Nakamura Y, Sato S, Tabata S.   Characteristics of the Lotus japonicus gene repertoire deduced from large-scale expressed sequence tag (EST) analysis.   Plant Mol. Biol.   2004 -7 -31   54(3)   405-14   15284495   10.1023/B:PLAN.0000036372.46942.b8  
Information   Rice   1674   Hirochika H, Guiderdoni E, An G, Hsing YI, Eun MY, Han CD, Upadhyaya N, Ramachandran S, Zhang Q, Pereira A, Sundaresan V, Leung H.   Rice mutant resources for gene discovery.   Plant Mol. Biol.   2004 -7 -31   54(3)   325-34   15284490   10.1023/B:PLAN.0000036368.74758.66  
Algae   NIES-144   20354   Steinbrenner J, Linden H.   Light induction of carotenoid biosynthesis genes in the green alga Haematococcus pluvialis: regulation by photosynthetic redox control.   Plant Mol. Biol.   2003 -7 -15   52(2)   343-56   12856941    
Information   Rice   1617   Price AH, Townend J, Jones MP, Audebert A, Courtois B.   Mapping QTLs associated with drought avoidance in upland rice grown in the Philippines and West Africa.   Plant Mol. Biol.   2002 -5 -10   48(5-6)   683-95   11999843    
Information   Rice   1625   Reiser L, Mueller LA, Rhee SY.   Surviving in a sea of data: a survey of plant genome data resources and issues in building data management systems.   Plant Mol. Biol.   2002 -2 -28   48(1-2)   59-74   11860214    
DNA material   refa1 (RDB02084)   49566   Kidou S, Ejiri S.   Isolation, characterization and mRNA expression of four cDNAs encoding translation elongation factor 1A from rice (Oryza sativa L.).   Plant Mol. Biol.   1998 -3 -4   36(1)   137-48   9484469    
Human and Animal Cells     38960   Urao T, Yamaguchi-Shinozaki K, Mitsukawa N, Shibata D, Shinozaki K.   Molecular cloning and characterization of a gene that encodes a MYC-related protein in Arabidopsis.   Plant Mol. Biol.   1996 -11 -1   32(3)   571-6   8980509    
DNA material   pNS RZ-1 (RDB01819)   29175   Hanano S, Sugita M, Sugiura M.   Isolation of a novel RNA-binding protein and its association with a large ribonucleoprotein particle present in the nucleoplasm of tobacco cells.   Plant Mol. Biol.   1996 -4 -1   31(1)   57-68   8704159    
Algae   NIES-144   19849   Kajiwara S, Kakizono T, Saito T, Kondo K, Ohtani T, Nishio N, Nagai S, Misawa N.   Isolation and functional identification of a novel cDNA for astaxanthin biosynthesis from Haematococcus pluvialis, and astaxanthin synthesis in Escherichia coli.   Plant Mol. Biol.   1995 -10 -1   29(2)   343-52   7579184    
DNA material   CYPEG1 (RDB01641)   49568   Toguri T, Umemoto N, Kobayashi O, Ohtani T.   Activation of anthocyanin synthesis genes by white light in eggplant hypocotyl tissues, and identification of an inducible P-450 cDNA.   Plant Mol. Biol.   1993 -12 -1   23(5)   933-46   8260632    
Algae     25736   Yamada T, Shimaji M, Fukuda Y.   Characterization of a chloroplast DNA sequence from Chlorella ellipsoidea that promotes autonomous replication in yeast.   Plant Mol. Biol.   1986 -7 -1   6(4)   245-52   24307323   10.1007/BF00015230  
Algae   NIES-2160,NIES-2170   26636   Hirano, H., Takeda, Y., Iwamura, T.   Unique repetitive sequences of 170bp in Chlorella.   Plant Mol. Biol.   1986   7,   311-317.      
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