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Species Resource name RRC ID Author Title Journal Published Volume Pages Pubmed ID DOI
Algae   NIES-2285   49196   Ohtaka K, Hori K, Kanno Y, Seo M, Ohta H.   Primitive Auxin Response without TIR1 and Aux/IAA in the Charophyte Alga Klebsormidium nitens.   Plant Physiol.   2017 -5 -24   174(3)   1621-1632   28533212   10.1104/pp.17.00274  
Arabidopsis / Cultured plant cells, genes   psw00001   48747   Kakizaki T, Kitashiba H, Zou Z, Li F, Fukino N, Ohara T, Nishio T, Ishida M.   A 2-Oxoglutarate-Dependent Dioxygenase Mediates the Biosynthesis of Glucoraphasatin in Radish.   Plant Physiol.   2017 -1 -20   173(3)   1583-1593   28100450   10.1104/pp.16.01814  
Arabidopsis / Cultured plant cells, genes   pda18258   48575   Hocq L, Sénéchal F, Lefebvre V, Lehner A, Domon JM, Mollet JC, Dehors J, Pageau K, Marcelo P, Guérineau F, Kolšek K, Mercadante D, Pelloux J.   Combined Experimental and Computational Approaches Reveal Distinct pH Dependence of Pectin Methylesterase Inhibitors.   Plant Physiol.   2016 -12 -31   173(2)   1075-1093   28034952   10.1104/pp.16.01790  
Arabidopsis / Cultured plant cells, genes   pst14354   48573   Sampedro J, Valdivia ER, Fraga P, Iglesias N, Revilla G, Zarra I.   Soluble and Membrane-Bound β-Glucosidases Are Involved in Trimming the Xyloglucan Backbone.   Plant Physiol.   2016 -12 -14   173(2)   1017-1030   27956490   10.1104/pp.16.01713  
Arabidopsis / Cultured plant cells, genes   pst15755   48769   Uhrig RG, Labandera AM, Tang LY, Sieben NA, Goudreault M, Yeung E, Gingras AC, Samuel MA, Moorhead GB.   Activation of Mitochondrial Protein Phosphatase SLP2 by MIA40 Regulates Seed Germination.   Plant Physiol.   2016 -12 -8   173(2)   956-969   27923987   10.1104/pp.16.01641  
Arabidopsis / Cultured plant cells, genes   pst05666   48574   Cui Y, Zhao Q, Xie HT, Wong WS, Wang X, Gao C, Ding Y, Tan Y, Ueda T, Zhang Y, Jiang L.   MONENSIN SENSITIVITY1 (MON1)/CALCIUM CAFFEINE ZINC SENSITIVITY1 (CCZ1)-Mediated Rab7 Activation Regulates Tapetal Programmed Cell Death and Pollen Development.   Plant Physiol.   2016 -11 -2   173(1)   206-218   27799422   10.1104/pp.16.00988  
Barley   オオムギ系統   47244   Wu D, Yamaji N, Yamane M, Kashino-Fujii M, Sato K, Feng Ma J.   The HvNramp5 Transporter Mediates Uptake of Cadmium and Manganese, But Not Iron.   Plant Physiol.   2016 -11   172(3)   1899-1910   27621428   10.1104/pp.16.01189  
Tomato   TOMJPF00001, TOMJPG4497-1, TOMJPG5663-1   47768   Fernandez-Moreno JP, Tzfadia O, Forment J, Presa S, Rogachev I, Meir S, Orzaez D, Aharoni A, Granell A.   Characterization of a New Pink-Fruited Tomato Mutant Results in the Identification of a Null Allele of the SlMYB12 Transcription Factor.   Plant Physiol.   2016 -7   171(3)   1821-36   27208285   10.1104/pp.16.00282  
Barley   Core collection   47953   Jost M, Taketa S, Mascher M, Himmelbach A, Yuo T, Shahinnia F, Rutten T, Druka A, Schmutzer T, Steuernagel B, Beier S, Taudien S, Scholz U, Morgante M, Waugh R, Stein N.   A Homolog of Blade-On-Petiole 1 and 2 (BOP1/2) Controls Internode Length and Homeotic Changes of the Barley Inflorescence.   Plant Physiol.   2016 -5 -22   171(2)   1113-27   27208226   10.1104/pp.16.00124  
Arabidopsis / Cultured plant cells, genes   pda00682   38866   van Roermund CW, Schroers MG, Wiese J, Facchinelli F, Kurz S, Wilkinson S, Charton L, Wanders RJ, Waterham HR, Weber AP, Link N.   The Peroxisomal NAD Carrier from Arabidopsis Imports NAD in Exchange with AMP.   Plant Physiol.   2016 -5 -22   171(3)   2127-39   27208243   10.1104/pp.16.00540  
Arabidopsis / Cultured plant cells, genes   rpc00031   36741   Toda E, Ohnishi Y, Okamoto T.   Development of Polyspermic Rice Zygotes.   Plant Physiol.   2016 -3 -6   171(1)   206-14   26945052   10.1104/pp.15.01953  
Yeast   Schizosaccharomyces pombe   36232   Zhang M, Chen C, Froehlich JE, TerBush AD, Osteryoung KW.   Roles of Arabidopsis PARC6 in Coordination of the Chloroplast Division Complex and Negative Regulation of FtsZ Assembly.   Plant Physiol.   2016 -1   170(1)   250-62   26527658   10.1104/pp.15.01460  
General Microbes   JCM 6162   41122   Radhika V, Ueda N, Tsuboi Y, Kojima M, Kikuchi J, Kudo T, Sakakibara H.   Methylated Cytokinins from the Phytopathogen Rhodococcus fascians Mimic Plant Hormone Activity.   Plant Physiol.   2015 -12   169(2)   1118-26   26251309   10.1104/pp.15.00787  
Lotus / Glycine   LORE1 P0665   36708   Wang C, Zhu M, Duan L, Yu H, Chang X, Li L, Kang H, Feng Y, Zhu H, Hong Z, Zhang Z.   Lotus japonicus clathrin heavy Chain1 is associated with Rho-Like GTPase ROP6 and involved in nodule formation.   Plant Physiol.   2015 -4   167(4)   1497-510   25717037   10.1104/pp.114.256107  
Arabidopsis / Cultured plant cells, genes   pst18264   33337   Kolb C, Nagel MK, Kalinowska K, Hagmann J, Ichikawa M, Anzenberger F, Alkofer A, Sato MH, Braun P, Isono E.   FYVE1 is essential for vacuole biogenesis and intracellular trafficking in Arabidopsis.   Plant Physiol.   2015 -2 -24   167(4)   1361-73   25699591   10.1104/pp.114.253377  
Arabidopsis / Cultured plant cells, genes   pda02782   33341   Köhler D, Montandon C, Hause G, Majovsky P, Kessler F, Baginsky S, Agne B.   Characterization of chloroplast protein import without Tic56, a component of the 1-megadalton translocon at the inner envelope membrane of chloroplasts.   Plant Physiol.   2015 -1 -16   167(3)   972-90   25588737   10.1104/pp.114.255562  
Arabidopsis / Cultured plant cells, genes   psh19427, pda06484, psh19427   33336   Levesque-Tremblay G, Müller K, Mansfield SD, Haughn GW.   HIGHLY METHYL ESTERIFIED SEEDS is a pectin methyl esterase involved in embryo development.   Plant Physiol.   2015 -1 -13   167(3)   725-37   25572606   10.1104/pp.114.255604  
Arabidopsis / Cultured plant cells, genes   rpc00031   31363   Ohnishi Y, Hoshino R, Okamoto T.   Dynamics of Male and Female Chromatin during Karyogamy in Rice Zygotes.   Plant Physiol.   2014 -6 -19   165(4)   1533-1543   24948834   10.1104/pp.114.236059  
Arabidopsis / Cultured plant cells, genes   pda09832   30784   Niehaus TD, Richardson LG, Gidda SK, ElBadawi-Sidhu M, Meissen JK, Mullen RT, Fiehn O, Hanson AD.   Plants utilize a highly conserved system for repair of NADH and NADPH hydrates.   Plant Physiol.   2014 -3 -7   165(1)   52-61   24599492   10.1104/pp.114.236539  
Arabidopsis / Cultured plant cells, genes   pda06900   30783   Kuijt SJ, Greco R, Agalou A, Shao J, 't Hoen CC, Overnäs E, Osnato M, Curiale S, Meynard D, van Gulik R, de Faria Maraschin S, Atallah M, de Kam RJ, Lamers GE, Guiderdoni E, Rossini L, Meijer AH, Ouwerkerk PB.   Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors.   Plant Physiol.   2014 -2 -18   164(4)   1952-66   24532604   10.1104/pp.113.222836  
Arabidopsis / Cultured plant cells, genes   pda09652, pda19723, pdz88595   30782   Maselli GA, Slamovits CH, Bianchi JI, Vilarrasa-Blasi J, Caño-Delgado AI, Mora-García S.   Revisiting the evolutionary history and roles of protein phosphatases with Kelch-like domains in plants.   Plant Physiol.   2014 -2 -5   164(3)   1527-41   24492333   10.1104/pp.113.233627  
Arabidopsis / Cultured plant cells, genes   pda12325   30775   Bueso E, Muñoz-Bertomeu J, Campos F, Brunaud V, Martínez L, Sayas E, Ballester P, Yenush L, Serrano R.   ARABIDOPSIS THALIANA HOMEOBOX25 uncovers a role for Gibberellins in seed longevity.   Plant Physiol.   2013 -12 -18   164(2)   999-1010   24335333   10.1104/pp.113.232223  
Arabidopsis / Cultured plant cells, genes   pst11274   30761   Fatihi A, Zbierzak AM, Dörmann P.   Alterations in seed development gene expression affect size and oil content of Arabidopsis seeds.   Plant Physiol.   2013 -9 -10   163(2)   973-85   24014578   10.1104/pp.113.226761  
Algae   NIES-1318   34728   Jin P, Gao K, Villafañe VE, Campbell DA, Helbling EW.   Ocean acidification alters the photosynthetic responses of a coccolithophorid to fluctuating ultraviolet and visible radiation.   Plant Physiol.   2013 -8   162(4)   2084-94   23749851   10.1104/pp.113.219543  
Lotus / Glycine   Lotus japonicus Sequence information   30993   Ohyama Y, Ito H, Kobayashi Y, Ikka T, Morita A, Kobayashi M, Imaizumi R, Aoki T, Komatsu K, Sakata Y, Iuchi S, Koyama H.   Characterization of AtSTOP1 orthologous genes in tobacco and other plant species.   Plant Physiol.   2013 -8   162(4)   1937-46   23749850   10.1104/pp.113.218958  
Arabidopsis / Cultured plant cells, genes   sja05800   30754   Kobayashi Y, Kobayashi Y, Watanabe T, Shaff JE, Ohta H, Kochian LV, Wagatsuma T, Kinraide TB, Koyama H.   Molecular and physiological analysis of Al³⁺ and H⁺ rhizotoxicities at moderately acidic conditions.   Plant Physiol.   2013 -7 -11   163(1)   180-92   23839867   10.1104/pp.113.222893  
Arabidopsis / Cultured plant cells, genes   pds27803   30751   Ohyama Y, Ito H, Kobayashi Y, Ikka T, Morita A, Kobayashi M, Imaizumi R, Aoki T, Komatsu K, Sakata Y, Iuchi S, Koyama H.   Characterization of AtSTOP1 orthologous genes in tobacco and other plant species.   Plant Physiol.   2013 -6 -12   162(4)   1937-46   23749850   10.1104/pp.113.218958  
Arabidopsis / Cultured plant cells, genes   rpc000008   30745   Moreno JE, Shyu C, Campos ML, Patel LC, Chung HS, Yao J, He SY, Howe GA.   Negative feedback control of jasmonate signaling by an alternative splice variant of JAZ10.   Plant Physiol.   2013 -5 -2   162(2)   1006-17   23632853   10.1104/pp.113.218164  
Arabidopsis / Cultured plant cells, genes   sja05800, sjw14000   30744   Kobayashi Y, Kobayashi Y, Sugimoto M, Lakshmanan V, Iuchi S, Kobayashi M, Bais HP, Koyama H.   Characterization of the complex regulation of AtALMT1 expression in response to phytohormones and other inducers.   Plant Physiol.   2013 -4 -30   162(2)   732-40   23624855   10.1104/pp.113.218065  
Algae   NIES-2095   21778   Kumazaki S, Akari M, Hasegawa M.   Transformation of thylakoid membranes during differentiation from vegetative cell into heterocyst visualized by microscopic spectral imaging.   Plant Physiol.   2013 -3   161(3)   1321-33   23274239   10.1104/pp.112.206680  
Arabidopsis / Cultured plant cells, genes   pst00020   28134   Xu L, Carrie C, Law SR, Murcha MW, Whelan J.   Acquisition, conservation, and loss of dual-targeted proteins in land plants.   Plant Physiol.   2012 -12 -22   161(2)   644-62   23257241   10.1104/pp.112.210997  
Arabidopsis / Cultured plant cells, genes   pdp82911,pdr53725,pdp08571,pdp53422,pdp53522...   28132   Lee Y, Jang M, Song K, Kang H, Lee MH, Lee DW, Zouhar J, Rojo E, Sohn EJ, Hwang I.   Functional identification of sorting receptors involved in trafficking of soluble lytic vacuolar proteins in vegetative cells of Arabidopsis.   Plant Physiol.   2012 -11 -24   161(1)   121-33   23175753   10.1104/pp.112.210914  
Lotus / Glycine   EST clones, MR020b12, MPD004c03   30973   Hakoyama T, Oi R, Hazuma K, Suga E, Adachi Y, Kobayashi M, Akai R, Sato S, Fukai E, Tabata S, Shibata S, Wu GJ, Hase Y, Tanaka A, Kawaguchi M, Kouchi H, Umehara Y, Suganuma N.   The SNARE protein SYP71 expressed in vascular tissues is involved in symbiotic nitrogen fixation in Lotus japonicus nodules.   Plant Physiol.   2012 -10   160(2)   897-905   22858633   10.1104/pp.112.200782  
Arabidopsis / Cultured plant cells, genes   pda01408, pda09751, pda08626, pda13209,...   28122   Carroll A, Mansoori N, Li S, Lei L, Vernhettes S, Visser RG, Somerville C, Gu Y, Trindade LM.   Complexes with mixed primary and secondary cellulose synthases are functional in Arabidopsis plants.   Plant Physiol.   2012 -8 -29   160(2)   726-37   22926318   10.1104/pp.112.199208  
Arabidopsis / Cultured plant cells, genes   pst01670   28118   Haga K, Sakai T.   PIN auxin efflux carriers are necessary for pulse-induced but not continuous light-induced phototropism in Arabidopsis.   Plant Physiol.   2012 -7 -31   160(2)   763-76   22843667   10.1104/pp.112.202432  
Arabidopsis / Cultured plant cells, genes   pda13195, pda04068   21140   Nakajima S, Ito H, Tanaka R, Tanaka A.   Chlorophyll b reductase plays an essential role in maturation and storability of Arabidopsis seeds.   Plant Physiol.   2012 -7 -4   160(1)   261-73   22751379   10.1104/pp.112.196881  
Prokaryotes E. coli   ?   35514   Ueda N, Kojima M, Suzuki K, Sakakibara H.   Agrobacterium tumefaciens tumor morphology root plastid localization and preferential usage of hydroxylated prenyl donor is important for efficient gall formation.   Plant Physiol.   2012 -7   159(3)   1064-72   22589470   10.1104/pp.112.198572  
Arabidopsis / Cultured plant cells, genes   pst15072, pst17581   21143   Wan J, Tanaka K, Zhang XC, Son GH, Brechenmacher L, Nguyen TH, Stacey G.   LYK4, a lysin motif receptor-like kinase, is important for chitin signaling and plant innate immunity in Arabidopsis.   Plant Physiol.   2012 -6 -30   160(1)   396-406   22744984   10.1104/pp.112.201699  
Arabidopsis / Cultured plant cells, genes   pst10287, pst02467, pst13186, pst20793     28115   Cheng Y, Zhou Y, Yang Y, Chi YJ, Zhou J, Chen JY, Wang F, Fan B, Shi K, Zhou YH, Yu JQ, Chen Z.   Structural and functional analysis of VQ motif-containing proteins in Arabidopsis as interacting proteins of WRKY transcription factors.   Plant Physiol.   2012 -4 -27   159(2)   810-25   22535423   10.1104/pp.112.196816  
Arabidopsis / Cultured plant cells, genes   pst18755, pst15755   15324   Uhrig RG, Moorhead GB.   Two ancient bacterial-like PPP family phosphatases from Arabidopsis are highly conserved plant proteins that possess unique properties.   Plant Physiol.   2011 -10 -7   157(4)   1778-92   21976480   10.1104/pp.111.182493  
Barley   FLcDNAs   12007   Matsumoto T, Tanaka T, Sakai H, Amano N, Kanamori H, Kurita K, Kikuta A, Kamiya K, Yamamoto M, Ikawa H, Fujii N, Hori K, Itoh T, Sato K.   Comprehensive sequence analysis of 24,783 barley full-length cDNAs derived from 12 clone libraries.   Plant Physiol.   2011 -5   156(1)   20-8   21415278   10.1104/pp.110.171579  
Information   Oryzabase   11916   Matsumoto T, Tanaka T, Sakai H, Amano N, Kanamori H, Kurita K, Kikuta A, Kamiya K, Yamamoto M, Ikawa H, Fujii N, Hori K, Itoh T, Sato K.   Comprehensive sequence analysis of 24,783 barley full-length cDNAs derived from 12 clone libraries.   Plant Physiol.   2011 -5   156(1)   20-8   21415278   10.1104/pp.110.171579  
Arabidopsis / Cultured plant cells, genes   pst18821, pst15134, pst14166, pst14194,...   15313   Bryant N, Lloyd J, Sweeney C, Myouga F, Meinke D.   Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis.   Plant Physiol.   2010 -12 -9   155(4)   1678-89   21139083   10.1104/pp.110.168120  
Algae   NIES-3377   31090   Minoda A, Weber AP, Tanaka K, Miyagishima SY.   Nucleus-independent control of the rubisco operon by the plastid-encoded transcription factor Ycf30 in the red alga Cyanidioschyzon merolae.   Plant Physiol.   2010 -11   154(3)   1532-40   20813908   10.1104/pp.110.163188  
Arabidopsis / Cultured plant cells, genes   pst12990, pst17487, pst10796   11409   Jun J, Fiume E, Roeder AH, Meng L, Sharma VK, Osmont KS, Baker C, Ha CM, Meyerowitz EM, Feldman LJ, Fletcher JC.   Comprehensive analysis of CLE polypeptide signaling gene expression and overexpression activity in Arabidopsis.   Plant Physiol.   2010 -10 -5   154(4)   1721-36   20884811   10.1104/pp.110.163683  
Arabidopsis / Cultured plant cells, genes   pst16228   11407   Bhargava A, Mansfield SD, Hall HC, Douglas CJ, Ellis BE.   MYB75 functions in regulation of secondary cell wall formation in the Arabidopsis inflorescence stem.   Plant Physiol.   2010 -9 -3   154(3)   1428-38   20807862   10.1104/pp.110.162735  
Rice   RIL, CSSL   11892   Wei X, Xu J, Guo H, Jiang L, Chen S, Yu C, Zhou Z, Hu P, Zhai H, Wan J.   DTH8 suppresses flowering in rice, influencing plant height and yield potential simultaneously.   Plant Physiol.   2010 -8   153(4)   1747-58   20566706   10.1104/pp.110.156943  
Prokaryotes E. coli   JW5606-1(Keio), JW4014-2(Keio)   35324   Maloney GS, Kochevenko A, Tieman DM, Tohge T, Krieger U, Zamir D, Taylor MG, Fernie AR, Klee HJ.   Characterization of the branched-chain amino acid aminotransferase enzyme family in tomato.   Plant Physiol.   2010 -7   153(3)   925-36   20435740   10.1104/pp.110.154922  
Arabidopsis / Cultured plant cells, genes   pda   6172   Freeman JL, Tamaoki M, Stushnoff C, Quinn CF, Cappa JJ, Devonshire J, Fakra SC, Marcus MA, McGrath SP, Van Hoewyk D, Pilon-Smits EA.   Molecular mechanisms of selenium tolerance and hyperaccumulation in Stanleya pinnata.   Plant Physiol.   2010 -5 -26   153(4)   1630-52   20498337   10.1104/pp.110.156570  
Arabidopsis / Cultured plant cells, genes   rpc00008   6170   Yamaguchi M, Goué N, Igarashi H, Ohtani M, Nakano Y, Mortimer JC, Nishikubo N, Kubo M, Katayama Y, Kakegawa K, Dupree P, Demura T.   VASCULAR-RELATED NAC-DOMAIN6 and VASCULAR-RELATED NAC-DOMAIN7 effectively induce transdifferentiation into xylem vessel elements under control of an induction system.   Plant Physiol.   2010 -5 -22   153(3)   906-14   20488898   10.1104/pp.110.154013  
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