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Species Resource name RRC ID Author Title Journal Published Volume Pages Pubmed ID DOI
Yeast     52778   Niimi T, Nakamura T.   The fission yeast SPB component Dms1 is required to initiate forespore membrane formation and maintain meiotic SPB components.   PLoS ONE   2018 -5 -31   13(5)   e0197879   29813128   10.1371/journal.pone.0197879  
Algae   NIES-48   53135   Wang Y, Seppänen-Laakso T, Rischer H, Wiebe MG.   Euglena gracilis growth and cell composition under different temperature, light and trophic conditions.   PLoS ONE   2018 -4 -13   13(4)   e0195329   29649233   10.1371/journal.pone.0195329  
Yeast   BY20590(D587-4B)   50629   Masumoto H, Matsuyama S.   The combination of NAD+-dependent deacetylase gene deletion and the interruption of gluconeogenesis causes increased glucose metabolism in budding yeast.   PLoS ONE   2018 -3 -27   13(3)   e0194942   29579121   10.1371/journal.pone.0194942  
Algae   NIES-2379,NIES-3753,NIES-3389,NIES-2862,...   53128   Matsuzaki R, Nozaki H, Kawachi M.   Taxonomic revision of Chloromonas nivalis (Volvocales, Chlorophyceae) strains, with the new description of two snow-inhabiting Chloromonas species.   PLoS ONE   2018 -3 -24   13(3)   e0193603   29570718   10.1371/journal.pone.0193603  
Yeast   BY28356   50107   Peek J, Harvey C, Gray D, Rosenberg D, Kolla L, Levy-Myers R, Yin R, McMurry JL, Kerscher O.   SUMO targeting of a stress-tolerant Ulp1 SUMO protease.   PLoS ONE   2018 -1 -20   13(1)   e0191391   29351565   10.1371/journal.pone.0191391  
Yeast   FY9361, FY24496, FY24764, FY24593, FY24484...   50011   Habib AGK, Sugiura K, Ueno M.   Chromosome passenger complex is required for the survival of cells with ring chromosomes in fission yeast.   PLoS ONE   2018 -1 -4   13(1)   e0190523   29298360   10.1371/journal.pone.0190523  
Mice   C57BL/6-Tg(CAG-flpe)36Ito/ItoRbrc(RBRC01834)   50068   Kawai Y, Oda A, Kanai Y, Goitsuka R.   Germ cell-intrinsic requirement for the homeodomain transcription factor PKnox1/Prep1 in adult spermatogenesis.   PLoS ONE   2018 -1 -3   13(1)   e0190702   29293683   10.1371/journal.pone.0190702  
Human and Animal Cells   C2C12(RCB0987)   52565   Hatazawa Y, Qian K, Gong DW, Kamei Y.   PGC-1α regulates alanine metabolism in muscle cells.   PLoS ONE   2018   13(1)   e0190904   29315328   10.1371/journal.pone.0190904  
Human and Animal Cells   HCT116(RCB2979)   52704   Kojima K, Nakamura T, Ohbu M, Katoh H, Ooizumi Y, Igarashi K, Ishii S, Tanaka T, Yokoi K, Nishizawa N, Yokota K, Kosaka Y, Sato T, Watanabe M, Yamashita K.   Cysteine dioxygenase type 1 (CDO1) gene promoter methylation during the adenoma-carcinoma sequence in colorectal cancer.   PLoS ONE   2018   13(5)   e0194785   29746493   10.1371/journal.pone.0194785  
Human and Animal Cells   ST2(RCB0224), C2C12(RCB0987), NB2a(RCB2639)   52585   Kumeta M, Takahashi D, Takeyasu K, Yoshimura SH.   Cell type-specific suppression of mechanosensitive genes by audible sound stimulation.   PLoS ONE   2018   13(1)   e0188764   29385174   10.1371/journal.pone.0188764  
Human and Animal Cells   TE-8(RCB2098), TE-11(RCB2100)   52609   Masuike Y, Tanaka K, Makino T, Yamasaki M, Miyazaki Y, Takahashi T, Kurokawa Y, Nakajima K, Mori M, Doki Y.   Esophageal squamous cell carcinoma with low mitochondrial copy number has mesenchymal and stem-like characteristics, and contributes to poor prognosis.   PLoS ONE   2018   13(2)   e0193159   29447301   10.1371/journal.pone.0193159  
Rats   W-Tg(Thy1-COP4/YFP*)4Jfhy (strainID=1072)   50008   Abe K, Yawo H.   Optogenetic conditioning of paradigm and pattern discrimination in the rat somatosensory system.   PLoS ONE   2017 -12 -22   12(12)   e0189439   29267341   10.1371/journal.pone.0189439  
Yeast   FY18372, FY18394   49560   Shamim HM, Minami Y, Tanaka D, Ukimori S, Murray JM, Ueno M.   Fission yeast strains with circular chromosomes require the 9-1-1 checkpoint complex for the viability in response to the anti-cancer drug 5-fluorodeoxyuridine.   PLoS ONE   2017 -11 -10   12(11)   e0187775   29121084   10.1371/journal.pone.0187775  
Rats   Rat Phenome Database の情報   50009   Zabielski P, Błachnio-Zabielska AU, Wójcik B, Chabowski A, Górski J.   Effect of plasma free fatty acid supply on the rate of ceramide synthesis in different muscle types in the rat.   PLoS ONE   2017 -11 -3   12(11)   e0187136   29095868   10.1371/journal.pone.0187136  
Rice   W0630 W1169 W1152 W1627 W1298 W1561 W1629...   49583   Ishikawa R, Iwata M, Taniko K, Monden G, Miyazaki N, Orn C, Tsujimura Y, Yoshida S, Ma JF, Ishii T.   Detection of quantitative trait loci controlling grain zinc concentration using Australian wild rice, Oryza meridionalis, a potential genetic resource for biofortification of rice   PLoS ONE   2017 -10 -27         10.1371/journal.pone.0187224  
Medaka   OK-Cab (MT830), ptena (m-a#1): ptena(del10a) (M...   49521   Matsuzaki Y, Sakuma T, Yamamoto T, Saya H.   Establishment of pten knockout medaka with transcription activator-like effector nucleases (TALENs) as a model of PTEN deficiency disease.   PLoS ONE   2017 -10 -21   12(10)   e0186878   29053747   10.1371/journal.pone.0186878  
Yeast   FY7651   49341   Sasaki Y, Kojima A, Shibata Y, Mitsuzawa H.   Filamentous invasive growth of mutants of the genes encoding ammonia-metabolizing enzymes in the fission yeast Schizosaccharomyces pombe.   PLoS ONE   2017 -10 -6   12(10)   e0186028   28982178   10.1371/journal.pone.0186028  
Algae   NIES-843   50273   Stough JMA, Tang X, Krausfeldt LE, Steffen MM, Gao G, Boyer GL, Wilhelm SW.   Molecular prediction of lytic vs lysogenic states for Microcystis phage: Metatranscriptomic evidence of lysogeny during large bloom events.   PLoS ONE   2017 -9 -6   12(9)   e0184146   28873456   10.1371/journal.pone.0184146  
Zebrafish   Tg(huC:GVP)   51248   Barykina NV, Subach OM, Piatkevich KD, Jung EE, Malyshev AY, Smirnov IV, Bogorodskiy AO, Borshchevskiy VI, Varizhuk AM, Pozmogova GE, Boyden ES, Anokhin KV, Enikolopov GN, Subach FV.   Green fluorescent genetically encoded calcium indicator based on calmodulin/M13-peptide from fungi.   PLoS ONE   2017 -8 -25   12(8)   e0183757   28837632   10.1371/journal.pone.0183757  
DNA material   pGL4-phHIF1A (RDB07693)   49267   Chiba R, Akiya M, Hashimura M, Oguri Y, Inukai M, Hara A, Saegusa M.   ALK signaling cascade confers multiple advantages to glioblastoma cells through neovascularization and cell proliferation.   PLoS ONE   2017 -8 -25   12(8)   e0183516   28837676   10.1371/journal.pone.0183516  
DNA material   pCAGGS1-mmAhR (RDB15878); pCAGGS1-CA-mmAhR (RDB15879...   50326   Kimura E, Kubo KI, Endo T, Ling W, Nakajima K, Kakeyama M, Tohyama C.   Impaired dendritic growth and positioning of cortical pyramidal neurons by activation of aryl hydrocarbon receptor signaling in the developing mouse.   PLoS ONE   2017 -8 -19   12(8)   e0183497   28820910   10.1371/journal.pone.0183497  
Mice   (hRN8-12 x hAG2-5)F1(RBRC02432)   49245   Suzuki D, Saito-Hakoda A, Ito R, Shimizu K, Parvin R, Shimada H, Noro E, Suzuki S, Fujiwara I, Kagechika H, Rainey WE, Kure S, Ito S, Yokoyama A, Sugawara A.   Suppressive effects of RXR agonist PA024 on adrenal CYP11B2 expression, aldosterone secretion and blood pressure.   PLoS ONE   2017 -8 -12   12(8)   e0181055   28800627   10.1371/journal.pone.0181055  
Tomato   TOMJPF00001   49313   Ezura K, Ji-Seong K, Mori K, Suzuki Y, Kuhara S, Ariizumi T, Ezura H.   Genome-wide identification of pistil-specific genes expressed during fruit set initiation in tomato (Solanum lycopersicum).   PLoS ONE   2017 -7 -7   12(7)   e0180003   28683065   10.1371/journal.pone.0180003  
DNA material   CS-CA-Venus (RDB05965)   48833   Nakajima R, Sato T, Ogawa T, Okano H, Noce T.   A noncoding RNA containing a SINE-B1 motif associates with meiotic metaphase chromatin and has an indispensable function during spermatogenesis.   PLoS ONE   2017 -6 -29   12(6)   e0179585   28658256   10.1371/journal.pone.0179585  
C.intestinalis / (O.japonicus)   Wild C. int Tg[MiCiPC2K]2 Tg[MiCiPC2K]3   50546   Osugi T, Sasakura Y, Satake H.   The nervous system of the adult ascidian Ciona intestinalis Type A (Ciona robusta): Insights from transgenic animal models.   PLoS ONE   2017 -6 -27   12(6)   e0180227   28651020   10.1371/journal.pone.0180227  
Zebrafish   Tg(CM-isl1:GFP)   51574   Bremer J, Skinner J, Granato M.   A small molecule screen identifies in vivo modulators of peripheral nerve regeneration in zebrafish.   PLoS ONE   2017 -6 -3   12(6)   e0178854   28575069   10.1371/journal.pone.0178854  
Human and Animal Cells   Dnmt1-/-Dnmt3a-/-Dnmt3b-/- ES (clone19)(AES0146)   48844   Yamazaki T, Hatano Y, Handa T, Kato S, Hoida K, Yamamura R, Fukuyama T, Uematsu T, Kobayashi N, Kimura H, Yamagata K.   Targeted DNA methylation in pericentromeres with genome editing-based artificial DNA methyltransferase.   PLoS ONE   2017 -5 -26   12(5)   e0177764   28542388   10.1371/journal.pone.0177764  
Pathogenic microorganisms   病原真核微生物   52790   Hagiwara D, Sakai K, Suzuki S, Umemura M, Nogawa T, Kato N, Osada H, Watanabe A, Kawamoto S, Gonoi T, Kamei K.   Temperature during conidiation affects stress tolerance, pigmentation, and trypacidin accumulation in the conidia of the airborne pathogen Aspergillus fumigatus.   PLoS ONE   2017 -5 -10   12(5)   e0177050   28486558   10.1371/journal.pone.0177050  
Wheat   KU-2012, KU-2025, KU-2059, KU-2075, KU-2159...   47975   Matsuda R, Iehisa JCM, Sakaguchi K, Ohno R, Yoshida K, Takumi S.   Global gene expression profiling related to temperature-sensitive growth abnormalities in interspecific crosses between tetraploid wheat and Aegilops tauschii.   PLoS ONE   2017 -5 -4   12(5)   e0176497   28463975   10.1371/journal.pone.0176497  
Wheat   Tritium lines core set   47974   Yoshioka M, Iehisa JCM, Ohno R, Kimura T, Enoki H, Nishimura S, Nasuda S, Takumi S.   Three dominant awnless genes in common wheat: Fine mapping, interaction and contribution to diversity in awn shape and length.   PLoS ONE   2017 -4 -25   12(4)   e0176148   28437453   10.1371/journal.pone.0176148  
DNA material   pEF-T7-human TBC1D12-N (RDB14979); pEF-T7-human T...   48780   Oguchi ME, Noguchi K, Fukuda M.   TBC1D12 is a novel Rab11-binding protein that modulates neurite outgrowth of PC12 cells.   PLoS ONE   2017 -4 -7   12(4)   e0174883   28384198   10.1371/journal.pone.0174883  
DNA material   pUC-mdv-alphal180-mutL2 (RDB15410)   49551   Yumura M, Yamamoto N, Yokoyama K, Mori H, Yomo T, Ichihashi N.   Combinatorial selection for replicable RNA by Qβ replicase while maintaining encoded gene function.   PLoS ONE   2017 -3 -23   12(3)   e0174130   28328998   10.1371/journal.pone.0174130  
Wheat   KU-2078, KU-2003, KU-2124   47973   Nishijima R, Okamoto Y, Hatano H, Takumi S.   Quantitative trait locus analysis for spikelet shape-related traits in wild wheat progenitor Aegilops tauschii: Implications for intraspecific diversification and subspecies differentiation.   PLoS ONE   2017 -3 -7   12(3)   e0173210   28264068   10.1371/journal.pone.0173210  
Drosophila   10067R-1,10067R-2,15009R-1,15009R-3,5889R-1...   47783   Nakaoka T, Iga M, Yamada T, Koujima I, Takeshima M, Zhou X, Suzuki Y, Ogihara MH, Kataoka H.   Deep sequencing of the prothoracic gland transcriptome reveals new players in insect ecdysteroidogenesis.   PLoS ONE   2017 -3 -4   12(3)   e0172951   28257485   10.1371/journal.pone.0172951  
Medaka   naruto^j113-2B (MT402), OK-Cab (MT830)   47681   Sasado T, Kondoh H, Furutani-Seiki M, Naruse K.   Mutation in cpsf6/CFIm68 (Cleavage and Polyadenylation Specificity Factor Subunit 6) causes short 3'UTRs and disturbs gene expression in developing embryos, as revealed by an analysis of primordial germ cell migration using the medaka mutant naruto.   PLoS ONE   2017 -3 -3   12(3)   e0172467   28253363   10.1371/journal.pone.0172467  
Medaka   hatching enzyme, d-rR/TOKYO (MT837)   47704   Nakano M, Arai Y, Kotera I, Okabe K, Kamei Y, Nagai T.   Genetically encoded ratiometric fluorescent thermometer with wide range and rapid response.   PLoS ONE   2017 -2 -18   12(2)   e0172344   28212432   10.1371/journal.pone.0172344  
Drosophila   1794-1R-1   47640   Raza QS, Vanderploeg JL, Jacobs JR.   Matrix Metalloproteinases are required for membrane motility and lumenogenesis during Drosophila heart development.   PLoS ONE   2017 -2 -14   12(2)   e0171905   28192468   10.1371/journal.pone.0171905  
Algae   NIES-35   48695   Yamagishi T, Yamaguchi H, Suzuki S, Horie Y, Tatarazako N.   Cell reproductive patterns in the green alga Pseudokirchneriella subcapitata (=Selenastrum capricornutum) and their variations under exposure to the typical toxicants potassium dichromate and 3,5-DCP.   PLoS ONE   2017 -2 -6   12(2)   e0171259   28152022   10.1371/journal.pone.0171259  
Medaka   Simcheon(WS267), Samsan(WS266), Guhang(WS265...   47781   Igarashi K, Kobayashi J, Katsumura T, Urushihara Y, Hida K, Watanabe-Asaka T, Oota H, Oda S, Mitani H.   An Approach to Elucidate NBS1 Function in DNA Repair Using Frequent Nonsynonymous Polymorphism in Wild Medaka (Oryzias latipes) Populations.   PLoS ONE   2017 -1 -21   12(1)   e0170006   28107384   10.1371/journal.pone.0170006  
DNA material   pBSIISK-SYN-GFP-BGHpA (RDB15107); pENTR1A-CMV-GFP...   48887   Sohn J, Takahashi M, Okamoto S, Ishida Y, Furuta T, Hioki H.   A Single Vector Platform for High-Level Gene Transduction of Central Neurons: Adeno-Associated Virus Vector Equipped with the Tet-Off System.   PLoS ONE   2017 -1 -7   12(1)   e0169611   28060929   10.1371/journal.pone.0169611  
DNA material, General Microbes   Genomic DNAs of Paracoccus denitrificansJCM 21484...   47733   Hoshino T, Inagaki F.   Application of Stochastic Labeling with Random-Sequence Barcodes for Simultaneous Quantification and Sequencing of Environmental 16S rRNA Genes.   PLoS ONE   2017 -1 -5   12(1)   e0169431   28052139   10.1371/journal.pone.0169431  
Human and Animal Cells   HeLa/Fucci(HeLa.S-Fucci)(RCB2812)   52510   Boström J, Sramkova Z, Salašová A, Johard H, Mahdessian D, Fedr R, Marks C, Medalová J, Souček K, Lundberg E, Linnarsson S, Bryja V, Sekyrova P, Altun M, Andäng M.   Comparative cell cycle transcriptomics reveals synchronization of developmental transcription factor networks in cancer cells.   PLoS ONE   2017   12(12)   e0188772   29228002   10.1371/journal.pone.0188772  
General Microbes   JCM 31412   50805   Doi H, Osawa I, Adachi H, Kawada M.   Vibrio japonicus sp. nov., a novel member of the Nereis clade in the genus Vibrio isolated from the coast of Japan.   PLoS ONE   2017   12(2)   e0172164   28231272   10.1371/journal.pone.0172164  
Human and Animal Cells   RAW 264(RCB0535)   52202   Fereig RM, Kuroda Y, Terkawi MA, Mahmoud ME, Nishikawa Y.   Immunization with Toxoplasma gondii peroxiredoxin 1 induces protective immunity against toxoplasmosis in mice.   PLoS ONE   2017   12(4)   e0176324   28448521   10.1371/journal.pone.0176324  
Human and Animal Cells   HS-Sch-2(RCB2230)   52248   Fukushima S, Endo M, Matsumoto Y, Fukushi JI, Matsunobu T, Kawaguchi KI, Setsu N, IIda K, Yokoyama N, Nakagawa M, Yahiro K, Oda Y, Iwamoto Y, Nakashima Y.   Hypoxia-inducible factor 1 alpha is a poor prognostic factor and potential therapeutic target in malignant peripheral nerve sheath tumor.   PLoS ONE   2017   12(5)   e0178064   28558056   10.1371/journal.pone.0178064  
C.elegans   tm1770   51338   Hall JA, McElwee MK, Freedman JH.   Identification of ATF-7 and the insulin signaling pathway in the regulation of metallothionein in C. elegans suggests roles in aging and reactive oxygen species.   PLoS ONE   2017   12(6)   e0177432   28632756   10.1371/journal.pone.0177432  
Human and Animal Cells   253G1(HPS0002), Nips-B2(HPS0223)   52451   Hasegawa D, Ochiai-Shino H, Onodera S, Nakamura T, Saito A, Onda T, Watanabe K, Nishimura K, Ohtaka M, Nakanishi M, Kosaki K, Yamaguchi A, Shibahara T, Azuma T.   Gorlin syndrome-derived induced pluripotent stem cells are hypersensitive to hedgehog-mediated osteogenic induction.   PLoS ONE   2017   12(10)   e0186879   29088246   10.1371/journal.pone.0186879  
Human and Animal Cells   Hep G2(RCB1886)   52479   Igarashi K, Yamashita K, Katoh H, Kojima K, Ooizumi Y, Nishizawa N, Nishiyama R, Kawamata H, Tajima H, Kaizu T, Kumamoto Y, Watanabe M.   Prognostic significance of promoter DNA hypermethylation of the cysteine dioxygenase 1 (CDO1) gene in primary gallbladder cancer and gallbladder disease.   PLoS ONE   2017   12(11)   e0188178   29161283   10.1371/journal.pone.0188178  
Human and Animal Cells   PANC-1(RCB2095)   52247   Iwata T, Uchino T, Koyama A, Johmura Y, Koyama K, Saito T, Ishiguro S, Arikawa T, Komatsu S, Miyachi M, Sano T, Nakanishi M, Shimada M.   The G2 checkpoint inhibitor CBP-93872 increases the sensitivity of colorectal and pancreatic cancer cells to chemotherapy.   PLoS ONE   2017   12(5)   e0178221   28558031   10.1371/journal.pone.0178221  
Human and Animal Cells   201B7(HPS0063)   52543   Kavitha MS, Kurita T, Park SY, Chien SI, Bae JS, Ahn BC.   Deep vector-based convolutional neural network approach for automatic recognition of colonies of induced pluripotent stem cells.   PLoS ONE   2017   12(12)   e0189974   29281701   10.1371/journal.pone.0189974  
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