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Species Resource name RRC ID Author Title Journal Published Volume Pages Pubmed ID DOI
Prokaryotes E. coli   ME8077, ME8162   50386   Kobayashi H.   Regeneration of Escherichia coli from Minicells through Lateral Gene Transfer.   J. Bacteriol.   2018 -2 -22   200(9)     29463604   10.1128/JB.00630-17  
DNA material   pUC18-HTK (with promoter) (RDB03436); Thermus the...   49277   Taniguchi H, Sungwallek S, Chotchuang P, Okano K, Honda K.   Salvage Pathway in Thermus thermophilus: Characterization of Nicotinamidase and the Impact of Its Gene Deletion at High Temperatures.   J. Bacteriol.   2017 -6 -21   199(17)     28630126   10.1128/JB.00359-17  
General Microbes   JCM 10099   48435   Shimosaka T, Tomita H, Atomi H.   Regulation of Coenzyme A Biosynthesis in the Hyperthermophilic Bacterium Thermotoga maritima.   J. Bacteriol.   2016 -5 -11   198(14)   1993-2000   27161115   10.1128/JB.00077-16  
General Microbes   JCM 8980   48434   Wang Y, Sima L, Lv J, Huang S, Liu Y, Wang J, Krupovic M, Chen X.   Identification, Characterization, and Application of the Replicon Region of the Halophilic Temperate Sphaerolipovirus SNJ1.   J. Bacteriol.   2016 -5 -4   198(14)   1952-64   27137505   10.1128/JB.00131-16  
General Microbes   JCM 9276, JCM 8864   48433   Hattori T, Shiba H, Ashiki K, Araki T, Nagashima YK, Yoshimatsu K, Fujiwara T.   Anaerobic Growth of Haloarchaeon Haloferax volcanii by Denitrification Is Controlled by the Transcription Regulator NarO.   J. Bacteriol.   2016 -1 -21   198(7)   1077-86   26787768   10.1128/JB.00833-15  
General Microbes   JCM 18229   41125   Tanaka Y, Teramoto H, Inui M.   Regulation of the Expression of De Novo Pyrimidine Biosynthesis Genes in Corynebacterium glutamicum.   J. Bacteriol.   2015 -8 -12   197(20)   3307-16   26260458   10.1128/JB.00395-15  
General Microbes   JCM 7785   40894   Yang Y, Yatsunami R, Ando A, Miyoko N, Fukui T, Takaichi S, Nakamura S.   Complete biosynthetic pathway of the C50 carotenoid bacterioruberin from lycopene in the extremely halophilic archaeon Haloarcula japonica.   J. Bacteriol.   2015 -2 -26   197(9)   1614-23   25712483   10.1128/JB.02523-14  
General Microbes   JCM 18229   34354   Tanaka Y, Takemoto N, Ito T, Teramoto H, Yukawa H, Inui M.   Genome-wide analysis of the role of global transcriptional regulator GntR1 in Corynebacterium glutamicum.   J. Bacteriol.   2014 -7 -2   196(18)   3249-58   24982307   10.1128/JB.01860-14  
General Microbes   JCM 2831   34226   Michener JK, Vuilleumier S, Bringel F, Marx CJ.   Phylogeny poorly predicts the utility of a challenging horizontally transferred gene in Methylobacterium strains.   J. Bacteriol.   2014 -4 -1   196(11)   2101-7   24682326   10.1128/JB.00034-14  
Prokaryotes E. coli   ME9062(BW25113), JW0531-KC, JW0731-KC, JW...   35635   Beketskaia MS, Bay DC, Turner RJ.   Outer membrane protein OmpW participates with small multidrug resistance protein member EmrE in quaternary cationic compound efflux.   J. Bacteriol.   2014 -3 -19   196(10)   1908-14   24633876   10.1128/JB.01483-14  
Prokaryotes E. coli   ME9062(BW25113), Keio collection   35641   Hidese R, Mihara H, Kurihara T, Esaki N.   Global identification of genes affecting iron-sulfur cluster biogenesis and iron homeostasis.   J. Bacteriol.   2014 -1 -15   196(6)   1238-49   24415728   10.1128/JB.01160-13  
Prokaryotes E. coli   ME9062(BW25113), JW0052-KC, JW3309-KC   35639   Ge X, Lyu ZX, Liu Y, Wang R, Zhao XS, Fu X, Chang Z.   Identification of FkpA as a key quality control factor for the biogenesis of outer membrane proteins under heat shock conditions.   J. Bacteriol.   2013 -11 -26   196(3)   672-80   24272780   10.1128/JB.01069-13  
General Microbes   JCM 12185   34078   Isobe K, Ogawa T, Hirose K, Yokoi T, Yoshimura T, Hemmi H.   Geranylgeranyl reductase and ferredoxin from Methanosarcina acetivorans are required for the synthesis of fully reduced archaeal membrane lipid in Escherichia coli cells.   J. Bacteriol.   2013 -11 -12   196(2)   417-23   24214941   10.1128/JB.00927-13  
General Microbes   JCM 18229   34062   Nishimura T, Teramoto H, Inui M, Yukawa H.   Corynebacterium glutamicum ArnR controls expression of nitrate reductase operon narKGHJI and nitric oxide (NO)-detoxifying enzyme gene hmp in an NO-responsive manner.   J. Bacteriol.   2013 -10 -22   196(1)   60-9   24142248   10.1128/JB.01004-13  
General Microbes   JCM 1115, JCM 15040   29463   Mutaguchi Y, Ohmori T, Wakamatsu T, Doi K, Ohshima T.   Identification, purification, and characterization of a novel amino acid racemase, isoleucine 2-epimerase, from Lactobacillus species.   J. Bacteriol.   2013 -9 -17   195(22)   5207-15   24039265   10.1128/JB.00709-13  
Prokaryotes E. coli   JW3839-KC(glnG), JW1967-KC(nac)   35615   Zeng J, Spiro S.   Finely tuned regulation of the aromatic amine degradation pathway in Escherichia coli.   J. Bacteriol.   2013 -9 -10   195(22)   5141-50   24013633   10.1128/JB.00837-13  
Prokaryotes E. coli   JW0744-KC   34524   Kurata T, Katayama A, Hiramatsu M, Kiguchi Y, Takeuchi M, Watanabe T, Ogasawara H, Ishihama A, Yamamoto K.   Identification of the set of genes, including nonannotated morA, under the direct control of ModE in Escherichia coli.   J. Bacteriol.   2013 -8 -6   195(19)   4496-505   23913318   10.1128/JB.00304-13  
Prokaryotes E. coli   ME9062(BW25113)   35578   Arora S, Bhamidimarri SP, Weber MH, Varshney U.   Role of the ribosomal P-site elements of m²G966, m⁵C967, and the S9 C-terminal tail in maintenance of the reading frame during translational elongation in Escherichia coli.   J. Bacteriol.   2013 -6 -5   195(16)   3524-30   23729652   10.1128/JB.00455-13  
Prokaryotes E. coli   ME9062(BW25113), JW5702-KC   35567   Shimada T, Yoshida H, Ishihama A.   Involvement of cyclic AMP receptor protein in regulation of the rmf gene encoding the ribosome modulation factor in Escherichia coli.   J. Bacteriol.   2013 -3 -12   195(10)   2212-9   23475967   10.1128/JB.02279-12  
General Microbes   JCM 18229   27700   Toyoda K, Teramoto H, Gunji W, Inui M, Yukawa H.   Involvement of regulatory interactions among global regulators GlxR, SugR, and RamA in expression of ramA in Corynebacterium glutamicum.   J. Bacteriol.   2013 -2 -12   195(8)   1718-26   23396909   10.1128/JB.00016-13  
Prokaryotes B. subtilis   MBS340, MBS341, MBS342, MBS343, MBS344...   33576   Tojo S, Hirooka K, Fujita Y.   Expression of kinA and kinB of Bacillus subtilis, necessary for sporulation initiation, is under positive stringent transcription control.   J. Bacteriol.   2013 -2 -5   195(8)   1656-65   23378509   10.1128/JB.02131-12  
Prokaryotes E. coli   JW0097-KC   35577   Sang PB, Varshney U.   Biochemical properties of MutT2 proteins from Mycobacterium tuberculosis and M. smegmatis and their contrasting antimutator roles in Escherichia coli.   J. Bacteriol.   2013 -1 -29   195(7)   1552-60   23354752   10.1128/JB.02102-12  
Prokaryotes E. coli   ME9062(BW25113), JW2372-KC, JW2371-KC, JW...   35592   Fontenot EM, Ezelle KE, Gabreski LN, Giglio ER, McAfee JM, Mills AC, Qureshi MN, Salmon KM, Toyota CG.   YfdW and YfdU are required for oxalate-induced acid tolerance in Escherichia coli K-12.   J. Bacteriol.   2013 -1 -22   195(7)   1446-55   23335415   10.1128/JB.01936-12  
General Microbes   JCM 2874   27699   Sugimoto S, Iwamoto T, Takada K, Okuda K, Tajima A, Iwase T, Mizunoe Y.   Staphylococcus epidermidis Esp degrades specific proteins associated with Staphylococcus aureus biofilm formation and host-pathogen interaction.   J. Bacteriol.   2013 -1 -15   195(8)   1645-55   23316041   10.1128/JB.01672-12  
Prokaryotes E. coli   JW3928-1( Keio )?   35623   Tamura M, Moore CJ, Cohen SN.   Nutrient dependence of RNase E essentiality in Escherichia coli.   J. Bacteriol.   2013 -1 -1   195(6)   1133-41   23275245   10.1128/JB.01558-12  
Prokaryotes E. coli   Keio collection   35559   Rosner JL, Martin RG.   Reduction of cellular stress by TolC-dependent efflux pumps in Escherichia coli indicated by BaeSR and CpxARP activation of spy in efflux mutants.   J. Bacteriol.   2012 -12 -25   195(5)   1042-50   23264577   10.1128/JB.01996-12  
General Microbes   JCM 17234   21496   Ohtsubo Y, Maruyama F, Mitsui H, Nagata Y, Tsuda M.   Complete genome sequence of Acidovorax sp. strain KKS102, a polychlorinated-biphenyl degrader.   J. Bacteriol.   2012 -12 -5   194(24)   6970-1   23209225   10.1128/JB.01848-12  
General Microbes   JCM 4913   21483   Jankowitsch F, Schwarz J, Rückert C, Gust B, Szczepanowski R, Blom J, Pelzer S, Kalinowski J, Mack M.   Genome sequence of the bacterium Streptomyces davawensis JCM 4913 and heterologous production of the unique antibiotic roseoflavin.   J. Bacteriol.   2012 -10 -9   194(24)   6818-27   23043000   10.1128/JB.01592-12  
Prokaryotes E. coli   JW2976-KC, JW3883-KC, JW1296-KC, JW2205-K...   35540   Sikdar R, Simmons AR, Doerrler WT.   Multiple envelope stress response pathways are activated in an Escherichia coli strain with mutations in two members of the DedA membrane protein family.   J. Bacteriol.   2012 -10 -9   195(1)   12-24   23042993   10.1128/JB.00762-12  
General Microbes   JCM 18229   21480   Tanaka Y, Ehira S, Teramoto H, Inui M, Yukawa H.   Coordinated regulation of gnd, which encodes 6-phosphogluconate dehydrogenase, by the two transcriptional regulators GntR1 and RamA in Corynebacterium glutamicum.   J. Bacteriol.   2012 -10 -2   194(23)   6527-36   23024346   10.1128/JB.01635-12  
Prokaryotes B. subtilis   MBS15, MBS16, MBS17, MBS18, MBS19, ...   33575   Akanuma G, Nanamiya H, Natori Y, Yano K, Suzuki S, Omata S, Ishizuka M, Sekine Y, Kawamura F.   Inactivation of ribosomal protein genes in Bacillus subtilis reveals importance of each ribosomal protein for cell proliferation and cell differentiation.   J. Bacteriol.   2012 -9 -25   194(22)   6282-91   23002217   10.1128/JB.01544-12  
Prokaryotes E. coli   ?   35500   Luciano DJ, Hui MP, Deana A, Foley PL, Belasco KJ, Belasco JG.   Differential control of the rate of 5'-end-dependent mRNA degradation in Escherichia coli.   J. Bacteriol.   2012 -9 -18   194(22)   6233-9   22984254   10.1128/JB.01223-12  
Prokaryotes E. coli   ME9062(BW25113), JW0531-KC, JW5738-KC, JW...   35525   Bay DC, Turner RJ.   Small multidrug resistance protein EmrE reduces host pH and osmotic tolerance to metabolic quaternary cation osmoprotectants.   J. Bacteriol.   2012 -9 -4   194(21)   5941-8   22942246   10.1128/JB.00666-12  
General Microbes   JCM 15597   21466   Kim J, Jung J, Sung JS, Chun J, Park W.   Genome sequence of pectin-degrading Alishewanella agri, isolated from landfill soil.   J. Bacteriol.   2012 -8 -31   194(18)   5135-6   22933763   10.1128/JB.01129-12  
Prokaryotes B. subtilis   MBS356, MBS357, MBS358, MBS359, MBS360...   33573   Hirooka K, Edahiro T, Kimura K, Fujita Y.   Direct and indirect regulation of the ycnKJI operon involved in copper uptake through two transcriptional repressors, YcnK and CsoR, in Bacillus subtilis.   J. Bacteriol.   2012 -8 -21   194(20)   5675-87   22904286   10.1128/JB.00919-12  
General Microbes   JCM 13285   21463   Cai L, Zhang T.   Genome of Bacillus macauensis ZFHKF-1, a long-chain-forming bacterium.   J. Bacteriol.   2012 -8 -14   194(17)   4780   22887677   10.1128/JB.01049-12  
Prokaryotes E. coli   JW5963-KC, JW1156-KC, pBAD33?   35476   Karimova G, Davi M, Ladant D.   The β-lactam resistance protein Blr, a small membrane polypeptide, is a component of the Escherichia coli cell division machinery.   J. Bacteriol.   2012 -8 -14   194(20)   5576-88   22885295   10.1128/JB.00774-12  
General Microbes   JCM 2831   21462   Marx CJ, Bringel F, Chistoserdova L, Moulin L, Farhan Ul Haque M, Fleischman DE, Gruffaz C, Jourand P, Knief C, Lee MC, Muller EE, Nadalig T, Peyraud R, Roselli S, Russ L, Goodwin LA, Ivanova N, Kyrpides N, Lajus A, Land ML, Médigue C, Mikhailova N, Nolan M, Woyke T, Stolyar S, Vorholt JA, Vuilleumier S.   Complete genome sequences of six strains of the genus Methylobacterium.   J. Bacteriol.   2012 -8 -14   194(17)   4746-8   22887658   10.1128/JB.01009-12  
DNA material   PD014023-01 (RDB15777); PC014023-41 (RDB15778).   50345   Agari Y, Sakamoto K, Kuramitsu S, Shinkai A.   Transcriptional repression mediated by a TetR family protein, PfmR, from Thermus thermophilus HB8.   J. Bacteriol.   2012 -7 -4   194(17)   4630-41   22753056   10.1128/JB.00668-12  
Human and Animal Cells     43931   Agari Y, Sakamoto K, Kuramitsu S, Shinkai A.   Transcriptional repression mediated by a TetR family protein, PfmR, from Thermus thermophilus HB8.   J. Bacteriol.   2012 -7 -4   194(17)   4630-41   22753056   10.1128/JB.00668-12  
General Microbes   JCM 21150   21442   Kumar S, Subramanian S, Raghava GP, Pinnaka AK.   Genome sequence of the marine bacterium Marinilabilia salmonicolor JCM 21150T.   J. Bacteriol.   2012 -6 -29   194(14)   3746   22740671   10.1128/JB.00649-12  
General Microbes   JCM 3132   21441   Seffernick JL, Erickson JS, Cameron SM, Cho S, Dodge AG, Richman JE, Sadowsky MJ, Wackett LP.   Defining sequence space and reaction products within the cyanuric acid hydrolase (AtzD)/barbiturase protein family.   J. Bacteriol.   2012 -6 -26   194(17)   4579-88   22730121   10.1128/JB.00791-12  
Prokaryotes E. coli   ME7985(W3110)?, JW3069-KC, JW5437-KC   35491   Yoshida H, Maki Y, Furuike S, Sakai A, Ueta M, Wada A.   YqjD is an inner membrane protein associated with stationary-phase ribosomes in Escherichia coli.   J. Bacteriol.   2012 -6 -5   194(16)   4178-83   22661687   10.1128/JB.00396-12  
Prokaryotes E. coli   JW5917-KC(rcsC)?, JW2205-KC?, JW2204-KC?, ...   35503   Tao K, Narita S, Tokuda H.   Defective lipoprotein sorting induces lolA expression through the Rcs stress response phosphorelay system.   J. Bacteriol.   2012 -5 -9   194(14)   3643-50   22563052   10.1128/JB.00553-12  
General Microbes   JCM 20779   19115   Xie BB, Shu YL, Qin QL, Rong JC, Zhang XY, Chen XL, Shi M, He HL, Zhou BC, Zhang YZ.   Genome sequences of type strains of seven species of the marine bacterium Pseudoalteromonas.   J. Bacteriol.   2012 -4 -27   194(10)   2746-7   22535931   10.1128/JB.00265-12  
Prokaryotes E. coli   JD27017, JW0173-KC, JW0892-KC, JW1590-KC,...   35474   Weski J, Ehrmann M.   Genetic analysis of 15 protein folding factors and proteases of the Escherichia coli cell envelope.   J. Bacteriol.   2012 -4 -17   194(12)   3225-33   22505681   10.1128/JB.00221-12  
General Microbes   JCM 15561   19110   Jung J, Chun J, Park W.   Genome sequence of extracellular-protease-producing Alishewanella jeotgali isolated from traditional Korean fermented seafood.   J. Bacteriol.   2012 -3 -31   194(8)   2097   22461542   10.1128/JB.00153-12  
Prokaryotes E. coli   ?   35533   Ohtake K, Sato A, Mukai T, Hino N, Yokoyama S, Sakamoto K.   Efficient decoding of the UAG triplet as a full-fledged sense codon enhances the growth of a prfA-deficient strain of Escherichia coli.   J. Bacteriol.   2012 -3 -20   194(10)   2606-13   22427623   10.1128/JB.00195-12  
Prokaryotes E. coli   ASKA library   35532   Tamura M, Kers JA, Cohen SN.   Second-site suppression of RNase E essentiality by mutation of the deaD RNA helicase in Escherichia coli.   J. Bacteriol.   2012 -2 -14   194(8)   1919-26   22328678   10.1128/JB.06652-11  
Prokaryotes E. coli   ME9062(BW25113)   17485   Yano H, Deckert GE, Rogers LM, Top EM.   Roles of long and short replication initiation proteins in the fate of IncP-1 plasmids.   J. Bacteriol.   2012 -1 -10   194(6)   1533-43   22228734   10.1128/JB.06395-11  
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