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Species Resource name RRC ID Author Title Journal Published Volume Pages Pubmed ID DOI
DNA material, General Microbes   Genomic DNAs of Paracoccus denitrificansJCM 21484...   47733   Hoshino T, Inagaki F.   Application of Stochastic Labeling with Random-Sequence Barcodes for Simultaneous Quantification and Sequencing of Environmental 16S rRNA Genes.   PLoS ONE   2017   12(1)   e0169431   28052139   10.1371/journal.pone.0169431  
Medaka   Simcheon(WS267), Samsan(WS266), Guhang(WS265...   47781   Igarashi K, Kobayashi J, Katsumura T, Urushihara Y, Hida K, Watanabe-Asaka T, Oota H, Oda S, Mitani H.   An Approach to Elucidate NBS1 Function in DNA Repair Using Frequent Nonsynonymous Polymorphism in Wild Medaka (Oryzias latipes) Populations.   PLoS ONE   2017   12(1)   e0170006   28107384   10.1371/journal.pone.0170006  
Medaka   hatching enzyme, d-rR/TOKYO (MT837)   47704   Nakano M, Arai Y, Kotera I, Okabe K, Kamei Y, Nagai T.   Genetically encoded ratiometric fluorescent thermometer with wide range and rapid response.   PLoS ONE   2017   12(2)   e0172344   28212432   10.1371/journal.pone.0172344  
Drosophila   10067R-1,10067R-2,15009R-1,15009R-3,5889R-1...   47783   Nakaoka T, Iga M, Yamada T, Koujima I, Takeshima M, Zhou X, Suzuki Y, Ogihara MH, Kataoka H.   Deep sequencing of the prothoracic gland transcriptome reveals new players in insect ecdysteroidogenesis.   PLoS ONE   2017   12(3)   e0172951   28257485   10.1371/journal.pone.0172951  
Drosophila   1794-1R-1   47640   Raza QS, Vanderploeg JL, Jacobs JR.   Matrix Metalloproteinases are required for membrane motility and lumenogenesis during Drosophila heart development.   PLoS ONE   2017   12(2)   e0171905   28192468   10.1371/journal.pone.0171905  
Medaka   naruto^j113-2B (MT402), OK-Cab (MT830)   47681   Sasado T, Kondoh H, Furutani-Seiki M, Naruse K.   Mutation in cpsf6/CFIm68 (Cleavage and Polyadenylation Specificity Factor Subunit 6) causes short 3'UTRs and disturbs gene expression in developing embryos, as revealed by an analysis of primordial germ cell migration using the medaka mutant naruto.   PLoS ONE   2017   12(3)   e0172467   28253363   10.1371/journal.pone.0172467  
Mice   ERAI mice(RBRC01099)   36837   Bhootada Y, Kotla P, Zolotukhin S, Gorbatyuk O, Bebok Z, Athar M, Gorbatyuk M.   Limited ATF4 Expression in Degenerating Retinas with Ongoing ER Stress Promotes Photoreceptor Survival in a Mouse Model of Autosomal Dominant Retinitis Pigmentosa.   PLoS ONE   2016   11(5)   e0154779   27144303   10.1371/journal.pone.0154779  
C.elegans   vang-1(tm1422)   47328   Carr D, Sanchez-Alvarez L, Imai JH, Slatculescu C, Noblett N, Mao L, Beese L, Colavita A.   A Farnesyltransferase Acts to Inhibit Ectopic Neurite Formation in C. elegans.   PLoS ONE   2016   11(6)   e0157537   27300162   10.1371/journal.pone.0157537  
DNA material   CSII-EF-Venus (RDB05552)   47321   Fukuda T, Tanaka T, Hamaguchi Y, Kawanami T, Nomiyama T, Yanase T.   Augmented Growth Hormone Secretion and Stat3 Phosphorylation in an Aryl Hydrocarbon Receptor Interacting Protein (AIP)-Disrupted Somatotroph Cell Line.   PLoS ONE   2016   11(10)   e0164131   27706259   10.1371/journal.pone.0164131  
Algae   NIES-48   47408   Guo B, Lei C, Ito T, Jiang Y, Ozeki Y, Goda K.   High-Throughput Accurate Single-Cell Screening of Euglena gracilis with Fluorescence-Assisted Optofluidic Time-Stretch Microscopy.   PLoS ONE   2016   11(11)   e0166214   27846239   10.1371/journal.pone.0166214  
DNA material   Genome Network Project Human cDNA IRAK049H17 (HGX019785...   47287   Hashimoto K, Kurosawa K, Murayama A, Seo H, Ohta K.   B Cell-Based Seamless Engineering of Antibody Fc Domains.   PLoS ONE   2016   11(12)   e0167232   27907066   10.1371/journal.pone.0167232  
DNA material   Genome Network Project W01A023B19 (HGE009243); pC...   36822   Imamura Y, Haruta M, Tomita Y, Matsumura K, Ikeda T, Yuno A, Hirayama M, Nakayama H, Mizuta H, Nishimura Y, Senju S.   Generation of Large Numbers of Antigen-Expressing Human Dendritic Cells Using CD14-ML Technology.   PLoS ONE   2016   11(4)   e0152384   27050553   10.1371/journal.pone.0152384  
Arabidopsis / Cultured plant cells, genes   pda10994   36894   Khatib A, Arhab Y, Bentebibel A, Abousalham A, Noiriel A.   Reassessing the Potential Activities of Plant CGI-58 Protein.   PLoS ONE   2016   11(1)   e0145806   26745266   10.1371/journal.pone.0145806  
DNA material   GNP Clone IRAK168I21 (HGY067413)   41305   Kitagaki J, Miyauchi S, Asano Y, Imai A, Kawai S, Michikami I, Yamashita M, Yamada S, Kitamura M, Murakami S.   A Putative Association of a Single Nucleotide Polymorphism in GPR126 with Aggressive Periodontitis in a Japanese Population.   PLoS ONE   2016   11(8)   e0160765   27509131   10.1371/journal.pone.0160765  
Drosophila   10814R-2,10814R-4   47230   Laranjeira A, Schulz J, Dotti CG.   Genes Related to Fatty Acid β-Oxidation Play a Role in the Functional Decline of the Drosophila Brain with Age.   PLoS ONE   2016   11(8)   e0161143   27518101   10.1371/journal.pone.0161143  
Arabidopsis / Cultured plant cells, genes   pda2153   36895   Lin TF, Saiga S, Abe M, Laux T.   OBE3 and WUS Interaction in Shoot Meristem Stem Cell Regulation.   PLoS ONE   2016   11(5)   e0155657   27196372   10.1371/journal.pone.0155657  
Yeast   BYP7577   35964   Moriguchi K, Yamamoto S, Ohmine Y, Suzuki K.   A Fast and Practical Yeast Transformation Method Mediated by Escherichia coli Based on a Trans-Kingdom Conjugal Transfer System: Just Mix Two Cultures and Wait One Hour.   PLoS ONE   2016   11(2)   e0148989   26849654   10.1371/journal.pone.0148989  
Mice   B6.Cg-Tg(FucciS/G2/M)#504Bsi(RBRC02706), B6.Cg-Tg(FucciG1)#596Bsi(RBRC02707)   46358   Morita R, Kihira M, Nakatsu Y, Nomoto Y, Ogawa M, Ohashi K, Mizuno K, Tachikawa T, Ishimoto Y, Morishita Y, Tsuji T.   Coordination of Cellular Dynamics Contributes to Tooth Epithelium Deformations.   PLoS ONE   2016   11(9)   e0161336   27588418   10.1371/journal.pone.0161336  
Tomato   TOMJPF00001   47760   Müller F, Xu J, Kristensen L, Wolters-Arts M, de Groot PF, Jansma SY, Mariani C, Park S, Rieu I.   High-Temperature-Induced Defects in Tomato (Solanum lycopersicum) Anther and Pollen Development Are Associated with Reduced Expression of B-Class Floral Patterning Genes.   PLoS ONE   2016   11(12)   e0167614   27936079   10.1371/journal.pone.0167614  
Algae   NIES-87   47179   Nakashima Y, Egami Y, Kimura M, Wakimoto T, Abe I.   Metagenomic Analysis of the Sponge Discodermia Reveals the Production of the Cyanobacterial Natural Product Kasumigamide by 'Entotheonella'.   PLoS ONE   2016   11(10)   e0164468   27732651   10.1371/journal.pone.0164468  
Yeast   BYP1804   36191   Nakatsukasa K, Kamura T.   Subcellular Fractionation Analysis of the Extraction of Ubiquitinated Polytopic Membrane Substrate during ER-Associated Degradation.   PLoS ONE   2016   11(2)   e0148327   26849222   10.1371/journal.pone.0148327  
Drosophila     47672   Nakazawa M, Matsubara H, Matsushita Y, Watanabe M, Vo N, Yoshida H, Yamaguchi M, Kataoka T.   The Human Bcl-2 Family Member Bcl-rambo Localizes to Mitochondria and Induces Apoptosis and Morphological Aberrations in Drosophila.   PLoS ONE   2016   11(6)   e0157823   27348811   10.1371/journal.pone.0157823  
Algae   NIES-2736,NIES-2737,NIES-3987,NIES-3988   47414   Nozaki H, Ueki N, Isaka N, Saigo T, Yamamoto K, Matsuzaki R, Takahashi F, Wakabayashi KI, Kawachi M.   A New Morphological Type of Volvox from Japanese Large Lakes and Recent Divergence of this Type and V. ferrisii in Two Different Freshwater Habitats.   PLoS ONE   2016   11(11)   e0167148   27880842   10.1371/journal.pone.0167148  
DNA material   pcDNA3.1-hTRPV1-FLAG WT (RDB14587), pcDNA3.1-hTRP...   47635   Ohbuchi K, Mori Y, Ogawa K, Warabi E, Yamamoto M, Hirokawa T.   Detailed Analysis of the Binding Mode of Vanilloids to Transient Receptor Potential Vanilloid Type I (TRPV1) by a Mutational and Computational Study.   PLoS ONE   2016   11(9)   e0162543   27606946   10.1371/journal.pone.0162543  
Mice   DS/Shi(RBRC03706)   36685   Okamoto K, Koda M, Okamoto T, Onoyama T, Miyoshi K, Kishina M, Kato J, Tokunaga S, Sugihara TA, Hara Y, Hino K, Murawaki Y.   A Series of microRNA in the Chromosome 14q32.2 Maternally Imprinted Region Related to Progression of Non-Alcoholic Fatty Liver Disease in a Mouse Model.   PLoS ONE   2016   11(5)   e0154676   27135827   10.1371/journal.pone.0154676  
Drosophila     47656   Schmid MR, Anderl I, Vo HT, Valanne S, Yang H, Kronhamn J, Rämet M, Rusten TE, Hultmark D.   Genetic Screen in Drosophila Larvae Links ird1 Function to Toll Signaling in the Fat Body and Hemocyte Motility.   PLoS ONE   2016   11(7)   e0159473   27467079   10.1371/journal.pone.0159473  
DNA material   AxCALacZ (RDB01745); AxCAZ3-F/RGD (RDB02194); A...   36054   Shen YH, Yang F, Wang H, Cai ZJ, Xu YP, Zhao A, Su Y, Zhang G, Zhu SX.   Arg-Gly-Asp (RGD)-Modified E1A/E1B Double Mutant Adenovirus Enhances Antitumor Activity in Prostate Cancer Cells In Vitro and in Mice.   PLoS ONE   2016   11(1)   e0147173   26799485   10.1371/journal.pone.0147173  
Rats   WTC.DMY-Mrs2dmy/Kyo (strainID=19)   47325   Shimotsuma Y, Tanaka M, Izawa T, Yamate J, Kuwamura M.   Enhanced Expression of Trib3 during the Development of Myelin Breakdown in dmy Myelin Mutant Rats.   PLoS ONE   2016   11(12)   e0168250   27977799   10.1371/journal.pone.0168250  
Algae   NIES-44,NIES-87,NIES-88,NIES-89,NIES-90,NIES-100,...   37464   Sun LW, Jiang WJ, Sato H, Kawachi M, Lu XW.   Rapid Classification and Identification of Microcystis aeruginosa Strains Using MALDI-TOF MS and Polygenetic Analysis.   PLoS ONE   2016   11(5)   e0156275   27227555   10.1371/journal.pone.0156275  
DNA material   8x3'Gli-BS-delta51-LucII (RDB08061)   45607   Torrado B, Graña M, Badano JL, Irigoín F.   Ciliary Entry of the Hedgehog Transcriptional Activator Gli2 Is Mediated by the Nuclear Import Machinery but Differs from Nuclear Transport in Being Imp-α/β1-Independent.   PLoS ONE   2016   11(8)   e0162033   27579771   10.1371/journal.pone.0162033  
Mice   C57BL/6-Tg(CAG-flpe)37Ito/ItoRbrc(RBRC01835)   39514   Tsuchida J, Matsusaka T, Ohtsuka M, Miura H, Okuno Y, Asanuma K, Nakagawa T, Yanagita M, Mori K.   Establishment of Nephrin Reporter Mice and Use for Chemical Screening.   PLoS ONE   2016   11(6)   e0157497   27362433   10.1371/journal.pone.0157497  
Human and Animal Cells   ATDC5(RCB0565)   37878   Wang Z, Iida A, Miyake N, Nishiguchi KM, Fujita K, Nakazawa T, Alswaid A, Albalwi MA, Kim OH, Cho TJ, Lim GY, Isidor B, David A, Rustad CF, Merckoll E, Westvik J, Stattin EL, Grigelioniene G, Kou I, Nakajima M, Ohashi H, Smithson S, Matsumoto N, Nishimura G, Ikegawa S.   Axial Spondylometaphyseal Dysplasia Is Caused by C21orf2 Mutations.   PLoS ONE   2016   11(3)   e0150555   26974433   10.1371/journal.pone.0150555  
Yeast   BY9943 (SCU2422)   47300   Yeasmin AM, Waliullah TM, Kondo A, Kaneko A, Koike N, Ushimaru T.   Orchestrated Action of PP2A Antagonizes Atg13 Phosphorylation and Promotes Autophagy after the Inactivation of TORC1.   PLoS ONE   2016   11(12)   e0166636   27973551   10.1371/journal.pone.0166636  
Medaka   olsp48d24 olsp35n14, olsp62a16, olec36d21,olec36g...   36417   Kikuta A, Furukawa E, Ogawa R, Suganuma N, Saitoh M, Nishimaki T, Katsumura T, Oota H, Kawamoto T, Tatsukawa H, Hashimoto H, Hitomi K.   Biochemical Characterization of Medaka (Oryzias latipes) Transglutaminases, OlTGK1 and OlTGK2, as Orthologues of Human Keratinocyte-Type Transglutaminase.   PLoS ONE   2015 -12 -29   10(12)   e0144194   26713442   10.1371/journal.pone.0144194  
General Microbes   JCM 5344, JCM 1192   41066   Nishibayashi R, Inoue R, Harada Y, Watanabe T, Makioka Y, Ushida K.   RNA of Enterococcus faecalis Strain EC-12 Is a Major Component Inducing Interleukin-12 Production from Human Monocytic Cells.   PLoS ONE   2015 -11   10(6)   e0129806   26083838   10.1371/journal.pone.0129806  
General Microbes   JCM 21281   41046   Shimoshige H, Kobayashi H, Mizuki T, Nagaoka Y, Inoue A, Maekawa T.   Effect of Polyethylene Glycol on the Formation of Magnetic Nanoparticles Synthesized by Magnetospirillum magnetotacticum MS-1.   PLoS ONE   2015 -10   10(5)   e0127481   25993286   10.1371/journal.pone.0127481  
Wheat   wheat FLcDNA clones   36105   Koo DH, Sehgal SK, Friebe B, Gill BS.   Structure and Stability of Telocentric Chromosomes in Wheat.   PLoS ONE   2015 -9 -18   10(9)   e0137747   26381743   10.1371/journal.pone.0137747  
General Microbes   JCM 2466, JCM 1599, JCM 2938, JCM 1462, JCM 11170...   41114   Takashima M, Manabe R, Iwasaki W, Ohyama A, Ohkuma M, Sugita T.   Selection of Orthologous Genes for Construction of a Highly Resolved Phylogenetic Tree and Clarification of the Phylogeny of Trichosporonales Species.   PLoS ONE   2015 -8 -4   10(8)   e0131217   26241762   10.1371/journal.pone.0131217  
Japanese macaques     34558   Suzuki-Hashido N, Hayakawa T, Matsui A, Go Y, Ishimaru Y, Misaka T, Abe K, Hirai H, Satta Y, Imai H.   Rapid Expansion of Phenylthiocarbamide Non-Tasters among Japanese Macaques.   PLoS ONE   2015 -7 -22   10(7)   e0132016   26201026   10.1371/journal.pone.0132016  
Medaka   FLFII STII d-rR.YHNI   36277   Froschauer A, Kube L, Kegler A, Rieger C, Gutzeit HO.   Tunable Protein Stabilization In Vivo Mediated by Shield-1 in Transgenic Medaka.   PLoS ONE   2015 -7 -6   10(7)   e0131252   26148066   10.1371/journal.pone.0131252  
Japanese macaques     36438   Yoshimi K, Kumada S, Weitemier A, Jo T, Inoue M.   Reward-Induced Phasic Dopamine Release in the Monkey Ventral Striatum and Putamen.   PLoS ONE   2015 -6 -25   10(6)   e0130443   26110516   10.1371/journal.pone.0130443  
Japanese macaques     36446   Okada K, Kobayashi Y.   Rhythmic Firing of Pedunculopontine Tegmental Nucleus Neurons in Monkeys during Eye Movement Task.   PLoS ONE   2015 -6 -1   10(6)   e0128147   26030664   10.1371/journal.pone.0128147  
General Microbes   JCM 12893   40892   Zhang Y, An J, Yang GY, Bai A, Zheng B, Lou Z, Wu G, Ye W, Chen HF, Feng Y, Manco G.   Active site loop conformation regulates promiscuous activity in a lactonase from Geobacillus kaustophilus HTA426.   PLoS ONE   2015 -5   10(2)   e0115130   25706379   10.1371/journal.pone.0115130  
General Microbes   JCM 15918   40872   Sun Z, Zhang W, Guo C, Yang X, Liu W, Wu Y, Song Y, Kwok LY, Cui Y, Menghe B, Yang R, Hu L, Zhang H.   Comparative genomic analysis of 45 type strains of the genus Bifidobacterium: a snapshot of its genetic diversity and evolution.   PLoS ONE   2015 -4   10(2)   e0117912   25658111   10.1371/journal.pone.0117912  
Wheat     36345   Nakano H, Mizuno N, Tosa Y, Yoshida K, Park P, Takumi S.   Accelerated senescence and enhanced disease resistance in hybrid chlorosis lines derived from interspecific crosses between tetraploid wheat and Aegilops tauschii.   PLoS ONE   2015 -3 -25   10(3)   e0121583   25806790   10.1371/journal.pone.0121583  
Rats   F344-Oune/Kyo   35172   Abe K, Takamatsu N, Ishikawa K, Tsurumi T, Tanimoto S, Sakurai Y, Lisse TS, Imai K, Serikawa T, Mashimo T.   Novel ENU-Induced Mutation in Tbx6 Causes Dominant Spondylocostal Dysostosis-Like Vertebral Malformations in the Rat.   PLoS ONE   2015   10(6)   e0130231   26090680   10.1371/journal.pone.0130231  
Human and Animal Cells   MIA Paca2(RCB2094)   37124   Akimoto M, Iizuka M, Kanematsu R, Yoshida M, Takenaga K.   Anticancer Effect of Ginger Extract against Pancreatic Cancer Cells Mainly through Reactive Oxygen Species-Mediated Autotic Cell Death.   PLoS ONE   2015   10(5)   e0126605   25961833   10.1371/journal.pone.0126605  
General Microbes   JCM 15146, JCM 19233, JCM 19240, JCM 19239   41186   Al-Saari N, Gao F, Rohul AA, Sato K, Sato K, Mino S, Suda W, Oshima K, Hattori M, Ohkuma M, Meirelles PM, Thompson FL, Thompson C, Filho GM, Gomez-Gil B, Sawabe T, Sawabe T.   Advanced Microbial Taxonomy Combined with Genome-Based-Approaches Reveals that Vibrio astriarenae sp. nov., an Agarolytic Marine Bacterium, Forms a New Clade in Vibrionaceae.   PLoS ONE   2015   10(8)   e0136279   26313925   10.1371/journal.pone.0136279  
Yeast   FY7799   35370   Alao JP, Weber AM, Shabro A, Sunnerhagen P.   Suppression of sensitivity to drugs and antibiotics by high external cation concentrations in fission yeast.   PLoS ONE   2015   10(3)   e0119297   25793410   10.1371/journal.pone.0119297  
Human and Animal Cells   Colon-26(RCB2657)   37062   Arai Y, Yamamoto T, Minamikawa T, Takamatsu T, Nagai T.   Spectral fingerprinting of individual cells visualized by cavity-reflection-enhanced light-absorption microscopy.   PLoS ONE   2015   10(5)   e0125733   25950513   10.1371/journal.pone.0125733  
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