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Species Resource name RRC ID Author Title Journal Published Volume Pages Pubmed ID DOI
Arabidopsis / Cultured plant cells, genes   psb00001   36748   Matsumura T, Okamoto T   Isolation of gametes from Brachypodium distachyon.   Plant Biotechnology.   2016   33   39-43     10.5511/plantbiotechnology.16.0123a  
Tomato   TOMJPF00001 (Micro-Tom)   32737   Yamazaki H, Suzui N, Yin YG, Kawachi N, Ishii S, Shimada H, Fujimaki S   Live-imaging evaluation of the efficacy of elevated CO 2 concentration in a closed cultivation system for the improvement of bioproduction in tomato fruits   Plant Biotechnology.   2015 -2 -6         10.5511/plantbiotechnology.14.1210a  
Arabidopsis / Cultured plant cells, genes   rpc00008   36989   Reyes TH, Maekawa S, Sato T, Yamaguchi J.   The Arabidopsis ubiquitin ligase ATL31 is transcriptionally controlled by WRKY33 transcription factor in response to pathogen attack.   Plant Biotechnology.   2015 -01 -29   32   11-19     10.5511/plantbiotechnology.14.1201b  
Lotus / Glycine   cDNA clone GMFL01- 20-B13   36727   Kai Uchida, Tomoyoshi Akashi, Toshio Aoki   Functional expression of cytochrome P450 in Escherichia coli: An approach to functional analysis of uncharacterized enzymes for flavonoid biosynthesis   Plant Biotechnology.   2015   32・3   205-213     10.5511/plantbiotechnology.15.0605a  
Morning Glory   Q41, Q74, Q81, Q1123   33186   Hiroki Ishikuro, Eiji Nitasaka, Motoyasu Otani   An efficient plant regeneration through embryogenic callus formation and direct somatic embryogenesis via immature embryo culture in Ipomoea purpurea and I. tricolor   Plant Biotechnology.   2014 -6 -28   31(2)   179-183     10.5511/plantbiotechnology.14.0216a  
Tomato     30491   Chusreeaeom K, Ariizumi T, Asamizu E, Okabe T, Shirasawa K, Ezura H.   Regulatory change in cell division activity and genetic mapping of a tomato (Solanum lycopersicum L.) elongated-fruit mutant.   Plant Biotechnology.   2014 -5 -28   31   149-158     10.5511/plantbiotechnology.14.0204a  
Arabidopsis / Cultured plant cells, genes   rpc00008   37008   Noda S, Yamaguchi M, Tsurumaki Y, Takahashi Y, Nishikubo N, Hattori T, Demura T, Suzuki S, Umezawa T.   ATL54, a ubiquitin ligase gene related to secondary cell wall formation, is transcriptionally regulated by MYB46.   Plant Biotechnology.   2013 -11 -23   30   503-509     10.5511/plantbiotechnology.13.0905b  
Tomato     27908   Baldet P, Bres C, Okabe Y, Mauxion JP, Just D, Bournonville C, Ferrand C, Mori M, Ezura H, Rothan C   Investigating the role of vitamin C in tomato through TILLING identification of ascorbate-deficient tomato mutants.   Plant Biotechnology.   2013 -9 -11   30   309-314     10.5511/plantbiotechnology.13.0622b  
Tomato     27907   Just D, Garcia V, Ferrand C, Bres C, Mauxion JP, Petit J, Jorly J, Assali J, Boumonville, Ferrand C, Baldet P, Lemaire-Chamley M, Mori K, Okabe Y, Ariizumi T, Asamizu E, Ezura H, Rothan C   Micro-Tom mutants for functional analysis of target genes and discovery of new alleles in tomato.   Plant Biotechnology.   2013 -9 -11   30   225-231     10.5511/plantbiotechnology.13.0622a  
Tomato     27870   Mori K, Lemaire-Chamley M, Nonaka S, Asamizu E, Mizoguchi T, Ezura H, Rothan C.   Comparative analysis of common genes involved in early fruit development of tomato and grape.   Plant Biotechnology.   2013 -8 -10   30   295-300     10.5511/plantbiotechnology.13.0321a  
Tomato     27871   Goto Y, Nonaka S, Yin Y, Koiwa T, Asamizu E, Ezura H, Matsukura C.   Isolation and characterization of the ADP-glucose pyrophsphorylase small subunit gene (AgpS1) promoter in tomato (Solanum lycopersicum L.).   Plant Biotechnology.   2013 -8 -7   30   279-286     10.5511/plantbiotechnology.13.0603a  
Arabidopsis / Cultured plant cells, genes   sja05800   30795   Narusaka M, Yao N, Iuchi A, Iuchi S, Shiraishi T, Narusaka Y.   Identification of Arabidopsis accession with resistance to Botrytis cinerea by natural variation analysis, and characterization of the resistance response.   Plant Biotechnology.   2013   30(1)   89–95      
Arabidopsis / Cultured plant cells, genes   rpc00008   28163   Noda S, Takahashi Y, Tsurumaki Y, Yamamura M, Nishikubo N, Yamaguchi M, Sakurai N, Hattori T, Suzuki H, Demura T, Shibata D, Suzuki S, Umezawa T   ATL54,a RING-H2 domain protein selected by a gene co-expression network analysis, is assocated with secondary cell wall formation inArabidopsis.   Plant Biotechnology.   2013   30   169-177      
Tomato   TOMJPF00001   27340   Miura K, Sato A, Shiba H, Kang SW, Kamada H, Ezura H   Accumulation of antioxidants and antioxidant activity in tomato, Solanum lycopersicum, are enhanced by the transcription factor SlICE1   Plant Biotechnology.   2012 -5 -30   29   261–269     10.5511/plantbiotechnology.12.0303b  
Tomato   TOMJPF00001   27339   Miura K, Shiba H, Ohta M, Kang SW, Sato A, Yuasa T, Iwaya-Inoue M, Kamada H, Ezura H   SlICE1encoding a MYC-type transcription factor controls cold tolerance in tomato, Solanum lycopersicum   Plant Biotechnology.   2012 -5 -30   29   253–260     10.5511/plantbiotechnology.12.0303a  
Arabidopsis / Cultured plant cells, genes   rpc00008   21138   Mami Okamoto, Yuuri Tsuboi, Hideki Goda, Takeshi Yoshizumi, Yukihisa Shimada, Takashi Hirayama.   Multiple hormone treatment revealed novel cooperative relationships between abscisic acid and biotic stress hormones in cultured cells.   Plant Biotechnology.   2012   29(1)   19-34      
Arabidopsis / Cultured plant cells, genes   rpc00008   30733   Matsui T, Matsuura H, Sawada K, Takita E, Kinjo S, Takenami S, Ueda K, Nishigaki N, Yamasaki S, Hata K, Yamaguchi M,Demura T, Kato K.   High level expression of transgenes by use of 5´-untranslated region of the Arabidopsis thaliana arabinogalactan-protein 21 gene in dicotyledons.   Plant Biotechnology.   2012   29   319–322      
Arabidopsis / Cultured plant cells, genes   rpc00008   30800   Okamoto M, Tsuboi Y, Goda H, Yoshizumi T, Shimada Y, Hirayam T.   Multiple hormone treatment revealed novel cooperative relationships between abscisic acid and biotic stress hormones in cultured cells.   Plant Biotechnology.   2012   29(1)   19-34      
Arabidopsis / Cultured plant cells, genes   rpc00008   28461   Takahashi S, Lee H-J,Yamashita S,Koyama T.   Characterization of cis-prenyltransferases from the rubberproducing plant Hevea brasiliensis heterologously expressedin yeast and plant cells.   Plant Biotechnology.   2012   29   411-417      
Tomato     27318   Takahashi M, Sakamoto A, Ezura H, Morikawa H   Prolonged exposure to atmospheric nitrogen dioxide increases fruit yield of tomato plants   Plant Biotechnology.   2011 -11 -20   28(5)   485-487     10.5511/plantbiotechnology.11.0819a  
Tomato     27320   Hirai T, Duhita N, Hiwasa-Tanase K, Ezura H   Cultivation under salt stress increases the concentration of recombinant miraculin in transgenic tomato fruit, resulting in an increase in purification efficiency   Plant Biotechnology.   2011 -9 -20   28(4)   387-392     10.5511/plantbiotechnology.11.0726a  
Tomato   TOMJPF00001(Micro-Tom)   7191   Neily MH, Baldet P, Arfaoui I, Saito T, Li Q, Asamizu E, Matsukura C, Moriguchi T, Ezura H.   Overexpression of apple spermidine synthase 1 (MdSPDS1) leads to significant salt tolerance in tomato plants   Plant Biotechnology.   2011 -2 -10   28   33-42     10.5511/plantbiotechnology.10.1013a  
Arabidopsis / Cultured plant cells, genes   rpc00008   12342   Masaomi Yamamura, Shohei Wada, Norikazu Sakakibara, Tomoyuki Nakatsubo, Shiro Suzuki, Takefumi Hattori, Migiwa Takeda, Nozomu Sakurai, Hideyuki Suzuki, Daisuke Shibata, Toshiaki Umezawa.   Occurrence of guaiacyl/p-hydroxyphenyl lignin in Arabidopsis thaliana T87 cells.   Plant Biotechnology.   2011   28(1)   1-8      
Arabidopsis / Cultured plant cells, genes   rpc00031   12343   Shinjiro Ogita, Nanaka Kikuchi, Taiji Nomura, Yasuo Kato.   A practical protocol for particle bombardment-mediated transformation of Phyllostachys bamboo suspension cells.   Plant Biotechnology.   2011   28(1)   43-50      
Arabidopsis / Cultured plant cells, genes   rpc00001   15329   Yuriko Watakabe, Sachiko Ono, Tsuneyuki Tanaka, Kazuyuki Hiratsuka.   Non-destructive bioluminescence detection system for monitoring defense gene expression in tobacco BY-2 cells.   Plant Biotechnology.   2011   28(3)   295-301      
Tomato   TOMJPF00001(Micro-Tom), TOMJPF00002(Moneymaker),...   7192   Kim YW, Hirai T, Kato K, Hiwasa-Tanase K, Ezura H.   Gene dosage and genetic background affect miraculin accumulation in transgenic tomato fruits.   Plant Biotechnology.   2010 -9 -25   27(4)   333-338     10.5511/plantbiotechnology.27.333  
Arabidopsis / Cultured plant cells, genes   pda03302, pda08635, pda02538, pda03830   6180   Huang S, Yamamoto H, Ide N, Mizuno S, Shiraishi N, Sato T, Nakagawa H, Sonoda M   Isolation and molecular characterization of a SoWRKY1 transcription factor from spinach (Spinacia oleracea).   Plant Biotechnology.   2010   27(2)   121-129      
Arabidopsis / Cultured plant cells, genes   rpc00008   6179   Miyahara T, Satoh S, Maeda K, Kimura S, Sasaki N, Ozeki Y   Isolation of Daucus carota ethylene insensitive3-like (DcEIL) involved in stress-inducible DcMYB1 expression in suspension-cultured carrot cells.   Plant Biotechnology.   2010   27(1)   91-7      
Arabidopsis / Cultured plant cells, genes   rpc00008    4841   Hisashi Harada, Masaki Fujisawa, Maki Teramoto, Nozomu Sakurai, Hideyuki Suzuki, Daisuke Shibata, Norihiko Misawa.   Simple functional analysis of key genes involved in astaxanthin biosynthesis using Arabidopsis cultured cells.   Plant Biotechnology.   2009   26(1)   81-92      
Arabidopsis / Cultured plant cells, genes   rpc00008    4840   Kosuke Kai, Hiroko Hashidzume, Kazuya Yoshimura, Hideyuki Suzuki, Nozomu Sakurai, Daisuke Shibata, Daisaku Ohta.   Metabolomics for the characterization of cytochromes P450-dependent fatty acid hydroxylation reactions in Arabidopsis.   Plant Biotechnology.   2009   26(1)   175-182      
Arabidopsis / Cultured plant cells, genes   rpc00008   6296   Mami Okamoto, Yuuri Tsuboi, Eisuke Chikayama, Jun Kikuchi, Takashi Hirayama.   Metabolic movement upon abscisic acid and salicylic acid combined treatments.   Plant Biotechnology.   2009   26(5)   551-560      
Arabidopsis / Cultured plant cells, genes   rpc00008    4838   Toshiharu Ohba, Kensuke Suzuki, Tomonori Oura, Tatsuya Ando, Hideyuki Noda, Nozomu Sakurai, Hideyuki Suzuki, Daisuke Shibata, Kiyozo Asada, Ikunoshin Kato.   ARTRA: a new database of the Arabidopsis transcriptome and gene-specific sequences for microarray probes and RNAi triggers.   Plant Biotechnology.   2009   26(1)   161-165      
Arabidopsis / Cultured plant cells, genes   rpc00008    4839   Yayoi Tsujimoto-Inui, Yuki Naito, Nozomu Sakurai, Hideyuki Suzuki, Ryosuke Sasaki, Hideyuki Takahashi, Namie Ohtsuki, Toshitsugu Nakano, Shuichi Yanagisawa, Daisuke Shibata, Hirofumi Uchimiya, Hideaki Shinshi, Kaoru Suzuki.   Functional genomics of the Dof transcription factor family genes in suspension-cultured cells of Arabidopsis thaliana.   Plant Biotechnology.   2009   26(1)   15-28      
Arabidopsis / Cultured plant cells, genes   rpc00008   6294   Yuki Naito, Yayoi Tsujimoto-Inui, Toshitsugu Nakano, Hideaki Shinshi, Kaoru Suzuki.   A batch processing protocol for construction of expression vector plasmids from a cDNA collection and Agrobacterium-mediated transformation of suspension-cultured cells of Arabidopsis.   Plant Biotechnology.   2009   26(4)   415-419      
Lotus / Glycine   Lotus japonicus   4690   Keita Suwabe, Kentaro Yano.   Omics databases in plant science: key to systems biology.   Plant Biotechnology.   2008   25   413-422      
Arabidopsis / Cultured plant cells, genes   pda,rpc00008    4039   Sano R, Ogata Y, Suzuki H, Ogawa Y, Dansako T, Sakurai N, Okazaki K, Aoki K, Saito K, Shibata D.   Over-expression of transcription associated factor genes co-expressed with genes of the mevalonate pathway, upstream of isoprenoid biosynthesis, in Arabidopsis cultured cells.   Plant Biotechnology.   2008   25(6)   583-587      
Arabidopsis / Cultured plant cells, genes   pda,  rpc00008    4040   Sano R, Suzuki H, Ogawa Y, Dansako T, Sakurai N, Okazaki K, Aoki K, Saito K, Shibata D.   Suppression of carotenoid synthesis in transgenic Arabidopsis cultured cells over-expressing the AHL29/SOB3 gene.   Plant Biotechnology.   2008   25(6)   573-577      
Arabidopsis / Cultured plant cells, genes   pda06160   4038   Shiraya T, Sato S, Kato T, Tabata S, Iwasaki T.   Arabidopsis VIP6/ELF8, the homolog of CTR9 component of the transcriptional complex PAF1, is essential for plant development.   Plant Biotechnology.   2008   25(5)   447-455      
Lotus / Glycine     4386   Suzuki A, Yamashita K, Ishihara M, Nakahara K, Abe M, Kucho K, Uchiumi T, Higashi S, Arima S.   Enhanced symbiotic nitrogen fixation by Lotus japonicus containing an antisense b -1,3-glucanase gene.   Plant Biotechnology.   2008   25   357-360      
Arabidopsis / Cultured plant cells, genes   pda02701   4037   Wangwattana B, Koyama Y, Nishiyama Y, Kitayama M, Yamazaki M, Saito K.   Characterization of PAP1-upregulated Glutathione S-transferase genes in Arabidopsis thaliana.   Plant Biotechnology.   2008   25(2)   191-196      
Tomato   TOMJPF00001(Micro-Tom)   18097   Yuasa T.,Tomokubo Y., Yamauchi A., Inoue A.,Iwaya-Inoue M.   Environmental stresses activate a tomato SNF1-related protein kinase 2 homolog, SlSnRK2C   Plant Biotechnology.   2007 -12 -10   Vol. 24, No. 4   401-408      
Arabidopsis / Cultured plant cells, genes   pda07543   4047   Fujimoto M, Arimura S, Nakazono M, Tsutsumi N.   Imaging of plant dynamin-related proteins and clathrin around the plasma membrane by variable incidence angle fluorescence microscopy.   Plant Biotechnology.   2007   24(5)   449-455      
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