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Species Resource name RRC ID Author Title Journal Published Volume Pages Pubmed ID DOI
Arabidopsis / Cultured plant cells, genes   pst13645   48771   Denis E, Kbiri N, Mary V, Claisse G, Conde E Silva N, Kreis M, Deveaux Y.   WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis.   Plant J.   2017 -2 -22   90(3)   560-572   28218997   10.1111/tpj.13513  
Algae   NIES-2145   48660   Nobusawa T, Hori K, Mori H, Kurokawa K, Ohta H.   Differently localized lysophosphatidic acid acyltransferases crucial for triacylglycerol biosynthesis in the oleaginous alga Nannochloropsis.   Plant J.   2017 -2 -22   90(3)   547-559   28218992   10.1111/tpj.13512  
Arabidopsis / Cultured plant cells, genes   pda12225, pda04013   48751   Vu KV, Nguyen NT, Jeong CY, Lee YH, Lee H, Hong SW.   Systematic deletion of the ER lectin chaperone genes reveals their roles in vegetative growth and male gametophyte development in Arabidopsis.   Plant J.   2016 -11 -27   89(5)   972-983   27888524   10.1111/tpj.13435  
Algae   NIES-2242, NIES-2207   47848   Sato N, Mori N, Hirashima T, Moriyama T.   Diverse pathways of phosphatidylcholine biosynthesis in algae as estimated by labeling studies and genomic sequence analysis.   Plant J.   2016 -8   87(3)   281-92   27133435   10.1111/tpj.13199  
Barley   FLcDNA: AK250769 and AK252107   47950   Knoch E, Motawie MS, Olsen CE, Møller BL, Lyngkjaer MF.   Biosynthesis of the leucine derived α-, β- and γ-hydroxynitrile glucosides in barley (Hordeum vulgare L.).   Plant J.   2016 -6 -24   88(2)   247-256   27337134   10.1111/tpj.13247  
Rice   W1943, W0106, W1588, W167, W1514, W...   36798   Miyamoto K, Fujita M, Shenton MR, Akashi S, Sugawara C, Sakai A, Horie K, Hasegawa M, Kawaide H, Mitsuhashi W, Nojiri H, Yamane H, Kurata N, Okada K, Toyomasu T.   Evolutionary trajectory of phytoalexin biosynthetic gene clusters in rice.   Plant J.   2016 -5 -1       27133567   10.1111/tpj.13200  
Wheat   wheat FLcDNA clones   36106   Tiwari VK, Wang S, Danilova T, Koo DH, Vrána J, Kubaláková M, Hribova E, Rawat N, Kalia B, Singh N, Friebe B, Doležel J, Akhunov E, Poland J, Sabir JS, Gill BS.   Exploring the tertiary gene pool of bread wheat: sequence assembly and analysis of chromosome 5M(g) of Aegilops geniculata.   Plant J.   2015 -11   84(4)   733-746   26408103   10.1111/tpj.13036  
Tomato   TOMJPF00001(Micro-Tom), TOMJPE2811-1(iaa9-3),...   33522   Shinozaki Y, Hao S, Kojima M, Sakakibara H, Ozeki-Iida Y, Zheng Y, Fei Z, Zhong S, Giovannoni JJ, Rose JK, Okabe Y, Heta Y, Ezura H, Ariizumi T.   Ethylene suppresses tomato (Solanum lycopersicum) fruit set through modification of gibberellin metabolism.   Plant J.   2015 -7   83(2)   237-51   25996898   10.1111/tpj.12882  
Arabidopsis / Cultured plant cells, genes   rpc00008   36988   Ogawa-Ohnishi M, Matsubayashi Y.   Identification of three potent hydroxyproline O-galactosyltransferases in Arabidopsis.   Plant J.   2015 -1 -21   81(5)   736-46   25600942   10.1111/tpj.12764  
Morning Glory   Violet、EST clones   32254   Shibuya K, Shimizu K, Niki T, Ichimura K.   Identification of a NAC transcription factor, EPHEMERAL1, that controls petal senescence in Japanese morning glory.   Plant J.   2014 -9   79(6)   1044-51   24961791   10.1111/tpj.12605  
Tomato   TOMJPF00001(Micro-Tom)   30626   Ariizumi T, Kishimoto S, Kakami R, Maoka T, Hirakawa H, Suzuki Y, Ozeki Y, Shirasawa K, Bernillon S, Okabe Y, Moing A, Asamizu E, Rothan C, Ohmiya A, Ezura H.   Identification of the carotenoid modifying gene PALE YELLOW PETAL 1 as an essential factor in xanthophyll esterification and yellow flower pigmentation in tomato (Solanum lycopersicum).   Plant J.   2014 -8   79(3)   453-65   24888879   10.1111/tpj.12570  
Rice     35121   Komiya R, Ohyanagi H, Niihama M, Watanabe T, Nakano M, Kurata N, Nonomura K.   Rice germline-specific Argonaute MEL1 protein binds to phasiRNAs generated from more than 700 lincRNAs.   Plant J.   2014 -5   78(3)   385-97   24635777   10.1111/tpj.12483  
Morning Glory   EST clones, BAC clones, AK1, AK26, AK28, ...   29117   Morita Y, Takagi K, Fukuchi-Mizutani M, Ishiguro K, Tanaka Y, Nitasaka E, Nakayama M, Saito N, Kagami T, Hoshino A, Iida S.   A chalcone isomerase-like protein enhances flavonoid production and flower pigmentation.   Plant J.   2014 -4   78(2)   294-304   24517863   10.1111/tpj.12469  
Arabidopsis / Cultured plant cells, genes   pda06248   30749   Zhou Y, Peisker H, Weth A, Baumgartner W, Dörmann P, Frentzen M.   Extraplastidial cytidinediphosphate diacylglycerol synthase activity is required for vegetative development in Arabidopsis thaliana.   Plant J.   2013 -5 -29   75(5)   867-79   23711240   10.1111/tpj.12248  
Arabidopsis / Cultured plant cells, genes   sja   28145   Yano R, Takebayashi Y, Nambara E, Kamiya Y, Seo M.   Combining association mapping and transcriptomics identify HD2B histone deacetylase as a genetic factor associated with seed dormancy in Arabidopsis thaliana.   Plant J.   2013 -3 -8   74(5)   815-28   23464703   10.1111/tpj.12167  
Arabidopsis / Cultured plant cells, genes   rpc00031   37121   Matsushita A, Inoue H, Goto S, Nakayama A, Sugano S, Hayashi N, Takatsuji H.   Nuclear ubiquitin proteasome degradation affects WRKY45 function in the rice defense program.   Plant J.   2012 -9 -28   73(2)   302-13   23013464   10.1111/tpj.12035  
Arabidopsis / Cultured plant cells, genes   pda07649   28116   Bao C, Wang J, Zhang R, Zhang B, Zhang H, Zhou Y, Huang S.   Arabidopsis VILLIN2 and VILLIN3 act redundantly in sclerenchyma development via bundling of actin filaments.   Plant J.   2012 -5 -9   71(6)   962-75   22563899   10.1111/j.1365-313X.2012.05044.x  
Rice   CM1272   12790   Yoshida A, Ohmori Y, Kitano H, Taguchi-Shiobara F, Hirano HY.   Aberrant spikelet and panicle1, encoding a TOPLESS-related transcriptional co-repressor, is involved in the regulation of meristem fate in rice.   Plant J.   2012 -4   70(2)   327-39   22136599   10.1111/j.1365-313X.2011.04872.x  
Lotus / Glycine   LORE1 seed   30974   Fukai E, Soyano T, Umehara Y, Nakayama S, Hirakawa H, Tabata S, Sato S, Hayashi M.   Establishment of a Lotus japonicus gene tagging population using the exon-targeting endogenous retrotransposon LORE1.   Plant J.   2012 -2   69(4)   720-30   22014259   10.1111/j.1365-313X.2011.04826.x  
Arabidopsis / Cultured plant cells, genes   pda18737   21133   Bissoli G, Niñoles R, Fresquet S, Palombieri S, Bueso E, Rubio L, García-Sánchez MJ, Fernández JA, Mulet JM, Serrano R.   Peptidyl-prolyl cis-trans isomerase ROF2 modulates intracellular pH homeostasis in Arabidopsis.   Plant J.   2012 -1 -25   70(4)   704-16   22268595   10.1111/j.1365-313X.2012.04921.x  
Arabidopsis / Cultured plant cells, genes   pst13842   21130   Ding G, Che P, Ilarslan H, Wurtele ES, Nikolau BJ.   Genetic dissection of methylcrotonyl CoA carboxylase indicates a complex role for mitochondrial leucine catabolism during seed development and germination.   Plant J.   2012 -1 -4   70(4)   562-77   22211474   10.1111/j.1365-313X.2011.04893.x  
Yeast     18948   Wang Y, Hou Y, Gu H, Kang D, Chen Z, Liu J, Qu LJ.   The Arabidopsis APC4 subunit of the anaphase-promoting complex/cyclosome (APC/C) is critical for both female gametogenesis and embryogenesis.   Plant J.   2012 -1   69(2)   227-40   21910774   10.1111/j.1365-313X.2011.04785.x  
Rice   標識遺伝子系統   47722   Kusumi K, Sakata C, Nakamura T, Kawasaki S, Yoshimura A, Iba K.   A plastid protein NUS1 is essential for build-up of the genetic system for early chloroplast development under cold stress conditions.   Plant J.   2011 -12   68(6)   1039-50   21981410   10.1111/j.1365-313X.2011.04755.x  
Arabidopsis / Cultured plant cells, genes   pda09625   21125   Sakai T, Mochizuki S, Haga K, Uehara Y, Suzuki A, Harada A, Wada T, Ishiguro S, Okada K.   The wavy growth 3 E3 ligase family controls the gravitropic response in Arabidopsis roots.   Plant J.   2011 -11 -30   70(2)   303-14   22122664   10.1111/j.1365-313X.2011.04870.x  
Arabidopsis / Cultured plant cells, genes   pda07025   15325   Kusumi K, Sakata C, Nakamura T, Kawasaki S, Yoshimura A, Iba K.   A plastid protein NUS1 is essential for build-up of the genetic system for early chloroplast development under cold stress conditions.   Plant J.   2011 -10 -11   68(6)   1039-50   21981410   10.1111/j.1365-313X.2011.04755.x  
Wheat     25675   Mizuno N, Shitsukawa N, Hosogi N, Park P, Takumi S.   Autoimmune response and repression of mitotic cell division occur in inter-specific crosses between tetraploid wheat and Aegilops tauschii Coss. that show low temperature-induced hybrid necrosis.   Plant J.   2011 -10   68(1)   114-28   21645146   10.1111/j.1365-313X.2011.04667.x  
Lotus / Glycine   L. japonicus Miyakojima MG-20   30963   Takos AM, Knudsen C, Lai D, Kannangara R, Mikkelsen L, Motawia MS, Olsen CE, Sato S, Tabata S, Jørgensen K, Møller BL, Rook F.   Genomic clustering of cyanogenic glucoside biosynthetic genes aids their identification in Lotus japonicus and suggests the repeated evolution of this chemical defence pathway.   Plant J.   2011 -10   68(2)   273-86   21707799   10.1111/j.1365-313X.2011.04685.x  
Arabidopsis / Cultured plant cells, genes   pda08060   15335   Yonekura-Sakakibara K, Fukushima A, Nakabayashi R, Hanada K, Matsuda F, Sugawara S, Inoue E, Kuromori T, Ito T, Shinozaki K, Wangwattana B, Yamazaki M, Saito K.   Two glycosyltransferases involved in anthocyanin modification delineated by transcriptome independent component analysis in Arabidopsis thaliana.   Plant J.   2011 -9 -9   69(1)   154-67   21899608   10.1111/j.1365-313X.2011.04779.x  
Arabidopsis / Cultured plant cells, genes   pda01711   15319   Bahaji A, Muñoz FJ, Ovecka M, Baroja-Fernández E, Montero M, Li J, Hidalgo M, Almagro G, Sesma MT, Ezquer I, Pozueta-Romero J.   Specific delivery of AtBT1 to mitochondria complements the aberrant growth and sterility phenotype of homozygous Atbt1 Arabidopsis mutants.   Plant J.   2011 -9 -3   68(6)   1115-21   21883554   10.1111/j.1365-313X.2011.04767.x  
Arabidopsis / Cultured plant cells, genes   rpc00008   39039   Sato T, Maekawa S, Yasuda S, Domeki Y, Sueyoshi K, Fujiwara M, Fukao Y, Goto DB, Yamaguchi J.   Identification of 14-3-3 proteins as a target of ATL31 ubiquitin ligase, a regulator of the C/N response in Arabidopsis.   Plant J.   2011 -6 -15   68(1)   137-46   21668537   10.1111/j.1365-313X.2011.04673.x  
Arabidopsis / Cultured plant cells, genes   pst12099   15341   Wang Z, Meng P, Zhang X, Ren D, Yang S.   BON1 interacts with the protein kinases BIR1 and BAK1 in modulation of temperature-dependent plant growth and cell death in Arabidopsis.   Plant J.   2011 -6 -1   67(6)   1081-93   21623975   10.1111/j.1365-313X.2011.04659.x  
Arabidopsis / Cultured plant cells, genes   pda04786   15340   Kuromori T, Sugimoto E, Shinozaki K.   Arabidopsis mutants of AtABCG22, an ABC transporter gene, increase water transpiration and drought susceptibility.   Plant J.   2011 -5 -18   67(5)   885-94   21575091   10.1111/j.1365-313X.2011.04641.x  
Arabidopsis / Cultured plant cells, genes   rpc00008   12335   Takase T, Nishiyama Y, Tanihigashi H, Ogura Y, Miyazaki Y, Yamada Y, Kiyosue T.   LOV KELCH PROTEIN2 and ZEITLUPE repress Arabidopsis photoperiodic flowering under non-inductive conditions, dependent on FLAVIN-BINDING KELCH REPEAT F-BOX1.   Plant J.   2011 -4 -27   67(4)   608-21   21518052   10.1111/j.1365-313X.2011.04618.x  
Arabidopsis / Cultured plant cells, genes   pda08090   12334   Michaeli S, Fait A, Lagor K, Nunes-Nesi A, Grillich N, Yellin A, Bar D, Khan M, Fernie AR, Turano FJ, Fromm H.   A mitochondrial GABA permease connects the GABA shunt and the TCA cycle, and is essential for normal carbon metabolism.   Plant J.   2011 -4 -20   67(3)   485-98   21501262   10.1111/j.1365-313X.2011.04612.x  
Rice   W1625, W1635, W1169=W1165, W2145, W0652...   12776   Ishikawa R, Ohnishi T, Kinoshita Y, Eiguchi M, Kurata N, Kinoshita T.   Rice interspecies hybrids show precocious or delayed developmental transitions in the endosperm without change to the rate of syncytial nuclear division.   Plant J.   2011 -3   65(5)   798-806   21251103   10.1111/j.1365-313X.2010.04466.x  
Arabidopsis / Cultured plant cells, genes   pda08839   12347   Stefano G, Renna L, Rossi M, Azzarello E, Pollastri S, Brandizzi F, Baluska F, Mancuso S.   AGD5 is a GTPase-activating protein at the trans-Golgi network.   Plant J.   2010 -11 -26   64(5)   790-9   21105926   10.1111/j.1365-313X.2010.04369.x  
Information   Oryzabase   12292   Ammiraju JS, Fan C, Yu Y, Song X, Cranston KA, Pontaroli AC, Lu F, Sanyal A, Jiang N, Rambo T, Currie J, Collura K, Talag J, Bennetzen JL, Chen M, Jackson S, Wing RA.   Spatio-temporal patterns of genome evolution in allotetraploid species of the genus Oryza.   Plant J.   2010 -8   63(3)   430-42   20487382   10.1111/j.1365-313X.2010.04251.x  
Arabidopsis / Cultured plant cells, genes   pda11165, pda02568, pda02482, pda01520,...   11405   Shahriari M, Keshavaiah C, Scheuring D, Sabovljevic A, Pimpl P, Häusler RE, Hülskamp M, Schellmann S.   The AAA-type ATPase AtSKD1 contributes to vacuolar maintenance of Arabidopsis thaliana.   Plant J.   2010 -7 -29   64(1)   71-85   20663085   10.1111/j.1365-313X.2010.04310.x  
Arabidopsis / Cultured plant cells, genes   pda09072, pda03459, pda11775, pda00075   11403   Taguchi G, Ubukata T, Nozue H, Kobayashi Y, Takahi M, Yamamoto H, Hayashida N.   Malonylation is a key reaction in the metabolism of xenobiotic phenolic glucosides in Arabidopsis and tobacco.   Plant J.   2010 -7 -16   63(6)   1031-41   20626660   10.1111/j.1365-313X.2010.04298.x  
Arabidopsis / Cultured plant cells, genes   pst00621   6161   Garcia C, Khan NZ, Nannmark U, Aronsson H.   The chloroplast protein CPSAR1, dually localized in the stroma and the inner envelope membrane, is involved in thylakoid biogenesis.   Plant J.   2010 -7 -1   63(1)   73-85   20408996   10.1111/j.1365-313X.2010.04225.x  
Arabidopsis / Cultured plant cells, genes   pda13720   11401   Nishimura K, Ashida H, Ogawa T, Yokota A.   A DEAD box protein is required for formation of a hidden break in Arabidopsis chloroplast 23S rRNA.   Plant J.   2010 -6 -22   63(5)   766-77   20561259   10.1111/j.1365-313X.2010.04276.x  
Algae   NIES-3377   31037   Busch A, Nield J, Hippler M.   The composition and structure of photosystem I-associated antenna from Cyanidioschyzon merolae.   Plant J.   2010 -6 -1   62(5)   886-97   20230507   10.1111/j.1365-313X.2010.04202.x  
Arabidopsis / Cultured plant cells, genes   rpc00008   6155   Kitamura S, Matsuda F, Tohge T, Yonekura-Sakakibara K, Yamazaki M, Saito K, Narumi I.   Metabolic profiling and cytological analysis of proanthocyanidins in immature seeds of Arabidopsis thaliana flavonoid accumulation mutants.   Plant J.   2010 -5 -1   62(4)   549-59   20180920   10.1111/j.1365-313X.2010.04174.x  
Arabidopsis / Cultured plant cells, genes   pda04241, pda03667   6156   Pracharoenwattana I, Zhou W, Keech O, Francisco PB, Udomchalothorn T, Tschoep H, Stitt M, Gibon Y, Smith SM.   Arabidopsis has a cytosolic fumarase required for the massive allocation of photosynthate into fumaric acid and for rapid plant growth on high nitrogen.   Plant J.   2010 -3 -6   62(5)   785-95   20202172   10.1111/j.1365-313X.2010.04189.x  
Rice   W0106, W0107, W0120, W0593, W0610, ...   12779   Wu J, Fujisawa M, Tian Z, Yamagata H, Kamiya K, Shibata M, Hosokawa S, Ito Y, Hamada M, Katagiri S, Kurita K, Yamamoto M, Kikuta A, Machita K, Karasawa W, Kanamori H, Namiki N, Mizuno H, Ma J, Sasaki T, Matsumoto T.   Comparative analysis of complete orthologous centromeres from two subspecies of rice reveals rapid variation of centromere organization and structure.   Plant J.   2009 -12   60(5)   805-19   19702669   10.1111/j.1365-313X.2009.04002.x  
Algae   NIES-3377   30381   Yagisawa F, Nishida K, Yoshida M, Ohnuma M, Shimada T, Fujiwara T, Yoshida Y, Misumi O, Kuroiwa H, Kuroiwa T.   Identification of novel proteins in isolated polyphosphate vacuoles in the primitive red alga Cyanidioschyzon merolae.   Plant J.   2009 -12   60(5)   882-93   19709388   10.1111/j.1365-313X.2009.04008.x  
Arabidopsis / Cultured plant cells, genes   pda05127, pda04979, pda02062, pda02575,...   6120   Samaha H, Delorme V, Pontvianne F, Cooke R, Delalande F, Van Dorsselaer A, Echeverria M, Sáez-Vásquez J.   Identification of protein factors and U3 snoRNAs from a Brassica oleracea RNP complex involved in the processing of pre-rRNA.   Plant J.   2009 -11 -7   61(3)   383-98   19891704   10.1111/j.1365-313X.2009.04061.x  
Arabidopsis / Cultured plant cells, genes   pda11926   6105   Lu Q, Tang X, Tian G, Wang F, Liu K, Nguyen V, Kohalmi SE, Keller WA, Tsang EW, Harada JJ, Rothstein SJ, Cui Y.   Arabidopsis homolog of the yeast TREX-2 mRNA export complex: components and anchoring nucleoporin.   Plant J.   2009 -10 -22   61(2)   259-70   19843313   10.1111/j.1365-313X.2009.04048.x  
Arabidopsis / Cultured plant cells, genes   pda08325   6285   Saul H, Elharrar E, Gaash R, Eliaz D, Valenci M, Akua T, Avramov M, Frankel N, Berezin I, Gottlieb D, Elazar M, David-Assael O, Tcherkas V, Mizrachi K, Shaul O.   The upstream open reading frame of the Arabidopsis AtMHX gene has a strong impact on transcript accumulation through the nonsense-mediated mRNA decay pathway.   Plant J.   2009 -9 -17   60(6)   1031-42   19754518   10.1111/j.1365-313X.2009.04021.x  
Arabidopsis / Cultured plant cells, genes   pdp21351   6281   Okada R, Kondo S, Satbhai SB, Yamaguchi N, Tsukuda M, Aoki S.   Functional characterization of CCA1/LHY homolog genes, PpCCA1a and PpCCA1b, in the moss Physcomitrella patens.   Plant J.   2009 -7 -25   60(3)   551-63   19624471   10.1111/j.1365-313X.2009.03979.x  
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