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Species Resource name RRC ID Author Title Journal Published Volume Pages Pubmed ID DOI
Yeast   BY28356   50107   Peek J, Harvey C, Gray D, Rosenberg D, Kolla L, Levy-Myers R, Yin R, McMurry JL, Kerscher O.   SUMO targeting of a stress-tolerant Ulp1 SUMO protease.   PLoS ONE   2018 -1 -20   13(1)   e0191391   29351565   10.1371/journal.pone.0191391  
Yeast   K. maxianus BY28356   50101   Peek J, Harvey C, Gray D, Rosenberg D, Kolla L, Levy-Myers R, Yin R, McMurry JL, Kerscher O.   SUMO targeting of a stress-tolerant Ulp1 SUMO protease.   PLoS ONE   2018 -1 -20   13(1)   e0191391   29351565   10.1371/journal.pone.0191391  
Yeast   FY9361, FY24496, FY24764, FY24593, FY24484...   50011   Habib AGK, Sugiura K, Ueno M.   Chromosome passenger complex is required for the survival of cells with ring chromosomes in fission yeast.   PLoS ONE   2018 -1 -4   13(1)   e0190523   29298360   10.1371/journal.pone.0190523  
Mice   C57BL/6-Tg(CAG-flpe)36Ito/ItoRbrc(RBRC01834)   50068   Kawai Y, Oda A, Kanai Y, Goitsuka R.   Germ cell-intrinsic requirement for the homeodomain transcription factor PKnox1/Prep1 in adult spermatogenesis.   PLoS ONE   2018 -1 -3   13(1)   e0190702   29293683   10.1371/journal.pone.0190702  
Rats   W-Tg(Thy1-COP4/YFP*)4Jfhy (strainID=1072)   50008   Abe K, Yawo H.   Optogenetic conditioning of paradigm and pattern discrimination in the rat somatosensory system.   PLoS ONE   2017 -12 -22   12(12)   e0189439   29267341   10.1371/journal.pone.0189439  
Yeast   FY18372, FY18394   49560   Shamim HM, Minami Y, Tanaka D, Ukimori S, Murray JM, Ueno M.   Fission yeast strains with circular chromosomes require the 9-1-1 checkpoint complex for the viability in response to the anti-cancer drug 5-fluorodeoxyuridine.   PLoS ONE   2017 -11 -10   12(11)   e0187775   29121084   10.1371/journal.pone.0187775  
Rats   Rat Phenome Database の情報   50009   Zabielski P, Błachnio-Zabielska AU, Wójcik B, Chabowski A, Górski J.   Effect of plasma free fatty acid supply on the rate of ceramide synthesis in different muscle types in the rat.   PLoS ONE   2017 -11 -3   12(11)   e0187136   29095868   10.1371/journal.pone.0187136  
Rice   W0630 W1169 W1152 W1627 W1298 W1561 W1629...   49583   Ishikawa R, Iwata M, Taniko K, Monden G, Miyazaki N, Orn C, Tsujimura Y, Yoshida S, Ma JF, Ishii T.   Detection of quantitative trait loci controlling grain zinc concentration using Australian wild rice, Oryza meridionalis, a potential genetic resource for biofortification of rice   PLoS ONE   2017 -10 -27         10.1371/journal.pone.0187224  
Medaka   OK-Cab (MT830), ptena (m-a#1): ptena(del10a) (M...   49521   Matsuzaki Y, Sakuma T, Yamamoto T, Saya H.   Establishment of pten knockout medaka with transcription activator-like effector nucleases (TALENs) as a model of PTEN deficiency disease.   PLoS ONE   2017 -10 -21   12(10)   e0186878   29053747   10.1371/journal.pone.0186878  
Yeast   FY7651   49341   Sasaki Y, Kojima A, Shibata Y, Mitsuzawa H.   Filamentous invasive growth of mutants of the genes encoding ammonia-metabolizing enzymes in the fission yeast Schizosaccharomyces pombe.   PLoS ONE   2017 -10 -6   12(10)   e0186028   28982178   10.1371/journal.pone.0186028  
Algae   NIES-843   50273   Stough JMA, Tang X, Krausfeldt LE, Steffen MM, Gao G, Boyer GL, Wilhelm SW.   Molecular prediction of lytic vs lysogenic states for Microcystis phage: Metatranscriptomic evidence of lysogeny during large bloom events.   PLoS ONE   2017 -9 -6   12(9)   e0184146   28873456   10.1371/journal.pone.0184146  
DNA material   pGL4-phHIF1A (RDB07693)   49267   Chiba R, Akiya M, Hashimura M, Oguri Y, Inukai M, Hara A, Saegusa M.   ALK signaling cascade confers multiple advantages to glioblastoma cells through neovascularization and cell proliferation.   PLoS ONE   2017 -8 -25   12(8)   e0183516   28837676   10.1371/journal.pone.0183516  
DNA material   pCAGGS1-mmAhR (RDB15878); pCAGGS1-CA-mmAhR (RDB15879...   50326   Kimura E, Kubo KI, Endo T, Ling W, Nakajima K, Kakeyama M, Tohyama C.   Impaired dendritic growth and positioning of cortical pyramidal neurons by activation of aryl hydrocarbon receptor signaling in the developing mouse.   PLoS ONE   2017 -8 -19   12(8)   e0183497   28820910   10.1371/journal.pone.0183497  
Mice   (hRN8-12 x hAG2-5)F1(RBRC02432)   49245   Suzuki D, Saito-Hakoda A, Ito R, Shimizu K, Parvin R, Shimada H, Noro E, Suzuki S, Fujiwara I, Kagechika H, Rainey WE, Kure S, Ito S, Yokoyama A, Sugawara A.   Suppressive effects of RXR agonist PA024 on adrenal CYP11B2 expression, aldosterone secretion and blood pressure.   PLoS ONE   2017 -8 -12   12(8)   e0181055   28800627   10.1371/journal.pone.0181055  
Tomato   TOMJPF00001   49313   Ezura K, Ji-Seong K, Mori K, Suzuki Y, Kuhara S, Ariizumi T, Ezura H.   Genome-wide identification of pistil-specific genes expressed during fruit set initiation in tomato (Solanum lycopersicum).   PLoS ONE   2017 -7 -7   12(7)   e0180003   28683065   10.1371/journal.pone.0180003  
DNA material   CS-CA-Venus (RDB05965)   48833   Nakajima R, Sato T, Ogawa T, Okano H, Noce T.   A noncoding RNA containing a SINE-B1 motif associates with meiotic metaphase chromatin and has an indispensable function during spermatogenesis.   PLoS ONE   2017 -6 -29   12(6)   e0179585   28658256   10.1371/journal.pone.0179585  
Human and Animal Cells   Dnmt1-/-Dnmt3a-/-Dnmt3b-/- ES (clone19)(AES0146)   48844   Yamazaki T, Hatano Y, Handa T, Kato S, Hoida K, Yamamura R, Fukuyama T, Uematsu T, Kobayashi N, Kimura H, Yamagata K.   Targeted DNA methylation in pericentromeres with genome editing-based artificial DNA methyltransferase.   PLoS ONE   2017 -5 -26   12(5)   e0177764   28542388   10.1371/journal.pone.0177764  
Wheat   KU-2012, KU-2025, KU-2059, KU-2075, KU-2159...   47975   Matsuda R, Iehisa JCM, Sakaguchi K, Ohno R, Yoshida K, Takumi S.   Global gene expression profiling related to temperature-sensitive growth abnormalities in interspecific crosses between tetraploid wheat and Aegilops tauschii.   PLoS ONE   2017 -5 -4   12(5)   e0176497   28463975   10.1371/journal.pone.0176497  
Wheat   Tritium lines core set   47974   Yoshioka M, Iehisa JCM, Ohno R, Kimura T, Enoki H, Nishimura S, Nasuda S, Takumi S.   Three dominant awnless genes in common wheat: Fine mapping, interaction and contribution to diversity in awn shape and length.   PLoS ONE   2017 -4 -25   12(4)   e0176148   28437453   10.1371/journal.pone.0176148  
DNA material   pEF-T7-human TBC1D12-N (RDB14979); pEF-T7-human T...   48780   Oguchi ME, Noguchi K, Fukuda M.   TBC1D12 is a novel Rab11-binding protein that modulates neurite outgrowth of PC12 cells.   PLoS ONE   2017 -4 -7   12(4)   e0174883   28384198   10.1371/journal.pone.0174883  
DNA material   pUC-mdv-alphal180-mutL2 (RDB15410)   49551   Yumura M, Yamamoto N, Yokoyama K, Mori H, Yomo T, Ichihashi N.   Combinatorial selection for replicable RNA by Qβ replicase while maintaining encoded gene function.   PLoS ONE   2017 -3 -23   12(3)   e0174130   28328998   10.1371/journal.pone.0174130  
Wheat   KU-2078, KU-2003, KU-2124   47973   Nishijima R, Okamoto Y, Hatano H, Takumi S.   Quantitative trait locus analysis for spikelet shape-related traits in wild wheat progenitor Aegilops tauschii: Implications for intraspecific diversification and subspecies differentiation.   PLoS ONE   2017 -3 -7   12(3)   e0173210   28264068   10.1371/journal.pone.0173210  
Drosophila   10067R-1,10067R-2,15009R-1,15009R-3,5889R-1...   47783   Nakaoka T, Iga M, Yamada T, Koujima I, Takeshima M, Zhou X, Suzuki Y, Ogihara MH, Kataoka H.   Deep sequencing of the prothoracic gland transcriptome reveals new players in insect ecdysteroidogenesis.   PLoS ONE   2017 -3 -4   12(3)   e0172951   28257485   10.1371/journal.pone.0172951  
Medaka   naruto^j113-2B (MT402), OK-Cab (MT830)   47681   Sasado T, Kondoh H, Furutani-Seiki M, Naruse K.   Mutation in cpsf6/CFIm68 (Cleavage and Polyadenylation Specificity Factor Subunit 6) causes short 3'UTRs and disturbs gene expression in developing embryos, as revealed by an analysis of primordial germ cell migration using the medaka mutant naruto.   PLoS ONE   2017 -3 -3   12(3)   e0172467   28253363   10.1371/journal.pone.0172467  
Medaka   hatching enzyme, d-rR/TOKYO (MT837)   47704   Nakano M, Arai Y, Kotera I, Okabe K, Kamei Y, Nagai T.   Genetically encoded ratiometric fluorescent thermometer with wide range and rapid response.   PLoS ONE   2017 -2 -18   12(2)   e0172344   28212432   10.1371/journal.pone.0172344  
Drosophila   1794-1R-1   47640   Raza QS, Vanderploeg JL, Jacobs JR.   Matrix Metalloproteinases are required for membrane motility and lumenogenesis during Drosophila heart development.   PLoS ONE   2017 -2 -14   12(2)   e0171905   28192468   10.1371/journal.pone.0171905  
Algae   NIES-35   48695   Yamagishi T, Yamaguchi H, Suzuki S, Horie Y, Tatarazako N.   Cell reproductive patterns in the green alga Pseudokirchneriella subcapitata (=Selenastrum capricornutum) and their variations under exposure to the typical toxicants potassium dichromate and 3,5-DCP.   PLoS ONE   2017 -2 -6   12(2)   e0171259   28152022   10.1371/journal.pone.0171259  
Medaka   Simcheon(WS267), Samsan(WS266), Guhang(WS265...   47781   Igarashi K, Kobayashi J, Katsumura T, Urushihara Y, Hida K, Watanabe-Asaka T, Oota H, Oda S, Mitani H.   An Approach to Elucidate NBS1 Function in DNA Repair Using Frequent Nonsynonymous Polymorphism in Wild Medaka (Oryzias latipes) Populations.   PLoS ONE   2017 -1 -21   12(1)   e0170006   28107384   10.1371/journal.pone.0170006  
DNA material   pBSIISK-SYN-GFP-BGHpA (RDB15107); pENTR1A-CMV-GFP...   48887   Sohn J, Takahashi M, Okamoto S, Ishida Y, Furuta T, Hioki H.   A Single Vector Platform for High-Level Gene Transduction of Central Neurons: Adeno-Associated Virus Vector Equipped with the Tet-Off System.   PLoS ONE   2017 -1 -7   12(1)   e0169611   28060929   10.1371/journal.pone.0169611  
DNA material, General Microbes   Genomic DNAs of Paracoccus denitrificansJCM 21484...   47733   Hoshino T, Inagaki F.   Application of Stochastic Labeling with Random-Sequence Barcodes for Simultaneous Quantification and Sequencing of Environmental 16S rRNA Genes.   PLoS ONE   2017 -1 -5   12(1)   e0169431   28052139   10.1371/journal.pone.0169431  
Rats   WTC.DMY-Mrs2dmy/Kyo (strainID=19)   47325   Shimotsuma Y, Tanaka M, Izawa T, Yamate J, Kuwamura M.   Enhanced Expression of Trib3 during the Development of Myelin Breakdown in dmy Myelin Mutant Rats.   PLoS ONE   2016 -12 -16   11(12)   e0168250   27977799   10.1371/journal.pone.0168250  
Yeast   BY9943 (SCU2422)   47300   Yeasmin AM, Waliullah TM, Kondo A, Kaneko A, Koike N, Ushimaru T.   Orchestrated Action of PP2A Antagonizes Atg13 Phosphorylation and Promotes Autophagy after the Inactivation of TORC1.   PLoS ONE   2016 -12 -16   11(12)   e0166636   27973551   10.1371/journal.pone.0166636  
DNA material   pCMV-Dpy19L1-GFP (RDB15087)   48823   Watanabe K, Bizen N, Sato N, Takebayashi H.   Endoplasmic Reticulum-Localized Transmembrane Protein Dpy19L1 Is Required for Neurite Outgrowth.   PLoS ONE   2016 -12 -14   11(12)   e0167985   27959946   10.1371/journal.pone.0167985  
Tomato   TOMJPF00001   47760   Müller F, Xu J, Kristensen L, Wolters-Arts M, de Groot PF, Jansma SY, Mariani C, Park S, Rieu I.   High-Temperature-Induced Defects in Tomato (Solanum lycopersicum) Anther and Pollen Development Are Associated with Reduced Expression of B-Class Floral Patterning Genes.   PLoS ONE   2016 -12 -10   11(12)   e0167614   27936079   10.1371/journal.pone.0167614  
DNA material   Genome Network Project Human cDNA IRAK049H17 (HGX019785...   47287   Hashimoto K, Kurosawa K, Murayama A, Seo H, Ohta K.   B Cell-Based Seamless Engineering of Antibody Fc Domains.   PLoS ONE   2016 -12 -3   11(12)   e0167232   27907066   10.1371/journal.pone.0167232  
Algae   NIES-2736,NIES-2737,NIES-3987,NIES-3988   47414   Nozaki H, Ueki N, Isaka N, Saigo T, Yamamoto K, Matsuzaki R, Takahashi F, Wakabayashi KI, Kawachi M.   A New Morphological Type of Volvox from Japanese Large Lakes and Recent Divergence of this Type and V. ferrisii in Two Different Freshwater Habitats.   PLoS ONE   2016 -11 -24   11(11)   e0167148   27880842   10.1371/journal.pone.0167148  
Algae   NIES-48   47408   Guo B, Lei C, Ito T, Jiang Y, Ozeki Y, Goda K.   High-Throughput Accurate Single-Cell Screening of Euglena gracilis with Fluorescence-Assisted Optofluidic Time-Stretch Microscopy.   PLoS ONE   2016 -11 -16   11(11)   e0166214   27846239   10.1371/journal.pone.0166214  
Wheat   LPGKU2271(Norin 61), KT001-001, KT003-005   47970   Mizuno N, Kinoshita M, Kinoshita S, Nishida H, Fujita M, Kato K, Murai K, Nasuda S.   Loss-of-Function Mutations in Three Homoeologous PHYTOCLOCK 1 Genes in Common Wheat Are Associated with the Extra-Early Flowering Phenotype.   PLoS ONE   2016 -10 -28   11(10)   e0165618   27788250   10.1371/journal.pone.0165618  
Wheat   TACBOW0283, TACBOW0284, TACBOW0285, TACBO...   47968   Garg M, Tsujimoto H, Gupta RK, Kumar A, Kaur N, Kumar R, Chunduri V, Sharma NK, Chawla M, Sharma S, Mundey JK.   Chromosome Specific Substitution Lines of Aegilops geniculata Alter Parameters of Bread Making Quality of Wheat.   PLoS ONE   2016 -10 -19   11(10)   e0162350   27755540   10.1371/journal.pone.0162350  
Algae   NIES-87   47179   Nakashima Y, Egami Y, Kimura M, Wakimoto T, Abe I.   Metagenomic Analysis of the Sponge Discodermia Reveals the Production of the Cyanobacterial Natural Product Kasumigamide by 'Entotheonella'.   PLoS ONE   2016 -10 -13   11(10)   e0164468   27732651   10.1371/journal.pone.0164468  
Zebrafish   Tg(CM-isl1:GFP)   49695   Rebman JK, Kirchoff KE, Walsh GS.   Cadherin-2 Is Required Cell Autonomously for Collective Migration of Facial Branchiomotor Neurons.   PLoS ONE   2016 -10 -8   11(10)   e0164433   27716840   10.1371/journal.pone.0164433  
DNA material   CSII-EF-Venus (RDB05552)   47321   Fukuda T, Tanaka T, Hamaguchi Y, Kawanami T, Nomiyama T, Yanase T.   Augmented Growth Hormone Secretion and Stat3 Phosphorylation in an Aryl Hydrocarbon Receptor Interacting Protein (AIP)-Disrupted Somatotroph Cell Line.   PLoS ONE   2016 -10 -6   11(10)   e0164131   27706259   10.1371/journal.pone.0164131  
DNA material   pcDNA3.1-hTRPV1-FLAG WT (RDB14587), pcDNA3.1-hTRPV1-FLAG-C158A (...   47635   Ohbuchi K, Mori Y, Ogawa K, Warabi E, Yamamoto M, Hirokawa T.   Detailed Analysis of the Binding Mode of Vanilloids to Transient Receptor Potential Vanilloid Type I (TRPV1) by a Mutational and Computational Study.   PLoS ONE   2016 -9 -9   11(9)   e0162543   27606946   10.1371/journal.pone.0162543  
Mice   B6.Cg-Tg(FucciS/G2/M)#504Bsi(RBRC02706), B6.Cg-...   46358   Morita R, Kihira M, Nakatsu Y, Nomoto Y, Ogawa M, Ohashi K, Mizuno K, Tachikawa T, Ishimoto Y, Morishita Y, Tsuji T.   Coordination of Cellular Dynamics Contributes to Tooth Epithelium Deformations.   PLoS ONE   2016 -9 -3   11(9)   e0161336   27588418   10.1371/journal.pone.0161336  
DNA material   8x3'Gli-BS-delta51-LucII (RDB08061)   45607   Torrado B, Graña M, Badano JL, Irigoín F.   Ciliary Entry of the Hedgehog Transcriptional Activator Gli2 Is Mediated by the Nuclear Import Machinery but Differs from Nuclear Transport in Being Imp-α/β1-Independent.   PLoS ONE   2016 -9 -1   11(8)   e0162033   27579771   10.1371/journal.pone.0162033  
Zebrafish   Tg(6xTcf/LefBS-miniP:d2EGFP)   49684   Sarmah S, Muralidharan P, Marrs JA.   Embryonic Ethanol Exposure Dysregulates BMP and Notch Signaling, Leading to Persistent Atrio-Ventricular Valve Defects in Zebrafish.   PLoS ONE   2016 -8 -25   11(8)   e0161205   27556898   10.1371/journal.pone.0161205  
Drosophila   10814R-2,10814R-4   47230   Laranjeira A, Schulz J, Dotti CG.   Genes Related to Fatty Acid β-Oxidation Play a Role in the Functional Decline of the Drosophila Brain with Age.   PLoS ONE   2016 -8 -16   11(8)   e0161143   27518101   10.1371/journal.pone.0161143  
General Microbes   JCM 14796, JCM 14262, JCM 17835, JCM 1391...   48517   Higuchi-Takeuchi M, Morisaki K, Toyooka K, Numata K.   Synthesis of High-Molecular-Weight Polyhydroxyalkanoates by Marine Photosynthetic Purple Bacteria.   PLoS ONE   2016 -8 -12   11(8)   e0160981   27513570   10.1371/journal.pone.0160981  
DNA material   GNP Clone IRAK168I21 (HGY067413)   41305   Kitagaki J, Miyauchi S, Asano Y, Imai A, Kawai S, Michikami I, Yamashita M, Yamada S, Kitamura M, Murakami S.   A Putative Association of a Single Nucleotide Polymorphism in GPR126 with Aggressive Periodontitis in a Japanese Population.   PLoS ONE   2016 -8 -11   11(8)   e0160765   27509131   10.1371/journal.pone.0160765  
Drosophila     47656   Schmid MR, Anderl I, Vo HT, Valanne S, Yang H, Kronhamn J, Rämet M, Rusten TE, Hultmark D.   Genetic Screen in Drosophila Larvae Links ird1 Function to Toll Signaling in the Fat Body and Hemocyte Motility.   PLoS ONE   2016 -7 -29   11(7)   e0159473   27467079   10.1371/journal.pone.0159473  
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