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Species Resource name RRC ID Author Title Journal Published Volume Pages Pubmed ID DOI
DNA material   CS-CA-Venus (RDB05965)   48833   Nakajima R, Sato T, Ogawa T, Okano H, Noce T.   A noncoding RNA containing a SINE-B1 motif associates with meiotic metaphase chromatin and has an indispensable function during spermatogenesis.   PLoS ONE   2017 -6 -29   12(6)   e0179585   28658256   10.1371/journal.pone.0179585  
Human and Animal Cells   Dnmt1-/-Dnmt3a-/-Dnmt3b-/- ES (clone19)(AES0146)   48844   Yamazaki T, Hatano Y, Handa T, Kato S, Hoida K, Yamamura R, Fukuyama T, Uematsu T, Kobayashi N, Kimura H, Yamagata K.   Targeted DNA methylation in pericentromeres with genome editing-based artificial DNA methyltransferase.   PLoS ONE   2017 -5 -26   12(5)   e0177764   28542388   10.1371/journal.pone.0177764  
Wheat     47975   Matsuda R, Iehisa JCM, Sakaguchi K, Ohno R, Yoshida K, Takumi S.   Global gene expression profiling related to temperature-sensitive growth abnormalities in interspecific crosses between tetraploid wheat and Aegilops tauschii.   PLoS ONE   2017 -5 -4   12(5)   e0176497   28463975   10.1371/journal.pone.0176497  
Wheat     47974   Yoshioka M, Iehisa JCM, Ohno R, Kimura T, Enoki H, Nishimura S, Nasuda S, Takumi S.   Three dominant awnless genes in common wheat: Fine mapping, interaction and contribution to diversity in awn shape and length.   PLoS ONE   2017 -4 -25   12(4)   e0176148   28437453   10.1371/journal.pone.0176148  
DNA material   pEF-T7-human TBC1D12-N (RDB14979); pEF-T7-human T...   48780   Oguchi ME, Noguchi K, Fukuda M.   TBC1D12 is a novel Rab11-binding protein that modulates neurite outgrowth of PC12 cells.   PLoS ONE   2017 -4 -7   12(4)   e0174883   28384198   10.1371/journal.pone.0174883  
Wheat     47973   Nishijima R, Okamoto Y, Hatano H, Takumi S.   Quantitative trait locus analysis for spikelet shape-related traits in wild wheat progenitor Aegilops tauschii: Implications for intraspecific diversification and subspecies differentiation.   PLoS ONE   2017 -3 -7   12(3)   e0173210   28264068   10.1371/journal.pone.0173210  
Algae   NIES-35   48695   Yamagishi T, Yamaguchi H, Suzuki S, Horie Y, Tatarazako N.   Cell reproductive patterns in the green alga Pseudokirchneriella subcapitata (=Selenastrum capricornutum) and their variations under exposure to the typical toxicants potassium dichromate and 3,5-DCP.   PLoS ONE   2017 -2 -6   12(2)   e0171259   28152022   10.1371/journal.pone.0171259  
DNA material   pBSIISK-SYN-GFP-BGHpA (RDB15107); pENTR1A-CMV-GFP...   48887   Sohn J, Takahashi M, Okamoto S, Ishida Y, Furuta T, Hioki H.   A Single Vector Platform for High-Level Gene Transduction of Central Neurons: Adeno-Associated Virus Vector Equipped with the Tet-Off System.   PLoS ONE   2017 -1 -7   12(1)   e0169611   28060929   10.1371/journal.pone.0169611  
DNA material, General Microbes   Genomic DNAs of Paracoccus denitrificansJCM 21484...   47733   Hoshino T, Inagaki F.   Application of Stochastic Labeling with Random-Sequence Barcodes for Simultaneous Quantification and Sequencing of Environmental 16S rRNA Genes.   PLoS ONE   2017   12(1)   e0169431   28052139   10.1371/journal.pone.0169431  
Drosophila   1794-1R-1   47640   Raza QS, Vanderploeg JL, Jacobs JR.   Matrix Metalloproteinases are required for membrane motility and lumenogenesis during Drosophila heart development.   PLoS ONE   2017   12(2)   e0171905   28192468   10.1371/journal.pone.0171905  
DNA material   pCMV-Dpy19L1-GFP (RDB15087)   48823   Watanabe K, Bizen N, Sato N, Takebayashi H.   Endoplasmic Reticulum-Localized Transmembrane Protein Dpy19L1 Is Required for Neurite Outgrowth.   PLoS ONE   2016 -12 -14   11(12)   e0167985   27959946   10.1371/journal.pone.0167985  
Wheat     47970   Mizuno N, Kinoshita M, Kinoshita S, Nishida H, Fujita M, Kato K, Murai K, Nasuda S.   Loss-of-Function Mutations in Three Homoeologous PHYTOCLOCK 1 Genes in Common Wheat Are Associated with the Extra-Early Flowering Phenotype.   PLoS ONE   2016 -10 -28   11(10)   e0165618   27788250   10.1371/journal.pone.0165618  
Wheat     47968   Garg M, Tsujimoto H, Gupta RK, Kumar A, Kaur N, Kumar R, Chunduri V, Sharma NK, Chawla M, Sharma S, Mundey JK.   Chromosome Specific Substitution Lines of Aegilops geniculata Alter Parameters of Bread Making Quality of Wheat.   PLoS ONE   2016 -10 -19   11(10)   e0162350   27755540   10.1371/journal.pone.0162350  
Japanese macaques     48021   Hirata Y, Amigó JM, Matsuzaka Y, Yokota R, Mushiake H, Aihara K.   Detecting Causality by Combined Use of Multiple Methods: Climate and Brain Examples.   PLoS ONE   2016 -7 -6   11(7)   e0158572   27380515   10.1371/journal.pone.0158572  
C.elegans   vang-1(tm1422)   47328   Carr D, Sanchez-Alvarez L, Imai JH, Slatculescu C, Noblett N, Mao L, Beese L, Colavita A.   A Farnesyltransferase Acts to Inhibit Ectopic Neurite Formation in C. elegans.   PLoS ONE   2016 -6 -15   11(6)   e0157537   27300162   10.1371/journal.pone.0157537  
Arabidopsis / Cultured plant cells, genes   pda2153   36895   Lin TF, Saiga S, Abe M, Laux T.   OBE3 and WUS Interaction in Shoot Meristem Stem Cell Regulation.   PLoS ONE   2016 -5 -20   11(5)   e0155657   27196372   10.1371/journal.pone.0155657  
Yeast     48041   Orii M, Kono K, Wen HI, Nakanishi M.   PP1-Dependent Formin Bnr1 Dephosphorylation and Delocalization from a Cell Division Site.   PLoS ONE   2016 -1 -16   11(1)   e0146941   26771880   10.1371/journal.pone.0146941  
Arabidopsis / Cultured plant cells, genes   pda10994   36894   Khatib A, Arhab Y, Bentebibel A, Abousalham A, Noiriel A.   Reassessing the Potential Activities of Plant CGI-58 Protein.   PLoS ONE   2016 -1 -9   11(1)   e0145806   26745266   10.1371/journal.pone.0145806  
Mice   ERAI mice(RBRC01099)   36837   Bhootada Y, Kotla P, Zolotukhin S, Gorbatyuk O, Bebok Z, Athar M, Gorbatyuk M.   Limited ATF4 Expression in Degenerating Retinas with Ongoing ER Stress Promotes Photoreceptor Survival in a Mouse Model of Autosomal Dominant Retinitis Pigmentosa.   PLoS ONE   2016   11(5)   e0154779   27144303   10.1371/journal.pone.0154779  
DNA material   CSII-EF-Venus (RDB05552)   47321   Fukuda T, Tanaka T, Hamaguchi Y, Kawanami T, Nomiyama T, Yanase T.   Augmented Growth Hormone Secretion and Stat3 Phosphorylation in an Aryl Hydrocarbon Receptor Interacting Protein (AIP)-Disrupted Somatotroph Cell Line.   PLoS ONE   2016   11(10)   e0164131   27706259   10.1371/journal.pone.0164131  
Algae   NIES-48   47408   Guo B, Lei C, Ito T, Jiang Y, Ozeki Y, Goda K.   High-Throughput Accurate Single-Cell Screening of Euglena gracilis with Fluorescence-Assisted Optofluidic Time-Stretch Microscopy.   PLoS ONE   2016   11(11)   e0166214   27846239   10.1371/journal.pone.0166214  
DNA material   Genome Network Project Human cDNA IRAK049H17 (HGX019785...   47287   Hashimoto K, Kurosawa K, Murayama A, Seo H, Ohta K.   B Cell-Based Seamless Engineering of Antibody Fc Domains.   PLoS ONE   2016   11(12)   e0167232   27907066   10.1371/journal.pone.0167232  
General Microbes   JCM 14796, JCM 14262, JCM 17835, JCM 1391...   48517   Higuchi-Takeuchi M, Morisaki K, Toyooka K, Numata K   Synthesis of High-Molecular-Weight Polyhydroxyalkanoates by Marine Photosynthetic Purple Bacteria.   PLoS ONE   2016   11   e0160981   27513570   10.1371/journal.pone.0160981  
DNA material   Genome Network Project W01A023B19 (HGE009243); pC...   36822   Imamura Y, Haruta M, Tomita Y, Matsumura K, Ikeda T, Yuno A, Hirayama M, Nakayama H, Mizuta H, Nishimura Y, Senju S.   Generation of Large Numbers of Antigen-Expressing Human Dendritic Cells Using CD14-ML Technology.   PLoS ONE   2016   11(4)   e0152384   27050553   10.1371/journal.pone.0152384  
DNA material   GNP Clone IRAK168I21 (HGY067413)   41305   Kitagaki J, Miyauchi S, Asano Y, Imai A, Kawai S, Michikami I, Yamashita M, Yamada S, Kitamura M, Murakami S.   A Putative Association of a Single Nucleotide Polymorphism in GPR126 with Aggressive Periodontitis in a Japanese Population.   PLoS ONE   2016   11(8)   e0160765   27509131   10.1371/journal.pone.0160765  
General Microbes   JCM 19864   48514   Krishnan R, Menon RR, Tanaka N, Busse HJ, Krishnamurthi S, Rameshkumar N   Arthrobacter pokkalii sp nov, a Novel Plant Associated Actinobacterium with Plant Beneficial Properties, Isolated from Saline Tolerant Pokkali Rice, Kerala, India.   PLoS ONE   2016   11   e0150322   26963092   10.1371/journal.pone.0150322  
Drosophila   10814R-2,10814R-4   47230   Laranjeira A, Schulz J, Dotti CG.   Genes Related to Fatty Acid β-Oxidation Play a Role in the Functional Decline of the Drosophila Brain with Age.   PLoS ONE   2016   11(8)   e0161143   27518101   10.1371/journal.pone.0161143  
General Microbes   JCM 13824, JCM 13825   48513   Lee YM, Kim MK, Ahn do H, Kim HW, Park H, Shin SC   Comparative Analysis of Lacinutrix Genomes and Their Association with Bacterial Habitat.   PLoS ONE   2016   11   e0148889   26882010   10.1371/journal.pone.0148889  
Yeast   BYP7577   35964   Moriguchi K, Yamamoto S, Ohmine Y, Suzuki K.   A Fast and Practical Yeast Transformation Method Mediated by Escherichia coli Based on a Trans-Kingdom Conjugal Transfer System: Just Mix Two Cultures and Wait One Hour.   PLoS ONE   2016   11(2)   e0148989   26849654   10.1371/journal.pone.0148989  
Mice   B6.Cg-Tg(FucciS/G2/M)#504Bsi(RBRC02706), B6.Cg-...   46358   Morita R, Kihira M, Nakatsu Y, Nomoto Y, Ogawa M, Ohashi K, Mizuno K, Tachikawa T, Ishimoto Y, Morishita Y, Tsuji T.   Coordination of Cellular Dynamics Contributes to Tooth Epithelium Deformations.   PLoS ONE   2016   11(9)   e0161336   27588418   10.1371/journal.pone.0161336  
Tomato   TOMJPF00001   47760   Müller F, Xu J, Kristensen L, Wolters-Arts M, de Groot PF, Jansma SY, Mariani C, Park S, Rieu I.   High-Temperature-Induced Defects in Tomato (Solanum lycopersicum) Anther and Pollen Development Are Associated with Reduced Expression of B-Class Floral Patterning Genes.   PLoS ONE   2016   11(12)   e0167614   27936079   10.1371/journal.pone.0167614  
Algae   NIES-87   47179   Nakashima Y, Egami Y, Kimura M, Wakimoto T, Abe I.   Metagenomic Analysis of the Sponge Discodermia Reveals the Production of the Cyanobacterial Natural Product Kasumigamide by 'Entotheonella'.   PLoS ONE   2016   11(10)   e0164468   27732651   10.1371/journal.pone.0164468  
Yeast   BYP1804   36191   Nakatsukasa K, Kamura T.   Subcellular Fractionation Analysis of the Extraction of Ubiquitinated Polytopic Membrane Substrate during ER-Associated Degradation.   PLoS ONE   2016   11(2)   e0148327   26849222   10.1371/journal.pone.0148327  
Drosophila     47672   Nakazawa M, Matsubara H, Matsushita Y, Watanabe M, Vo N, Yoshida H, Yamaguchi M, Kataoka T.   The Human Bcl-2 Family Member Bcl-rambo Localizes to Mitochondria and Induces Apoptosis and Morphological Aberrations in Drosophila.   PLoS ONE   2016   11(6)   e0157823   27348811   10.1371/journal.pone.0157823  
Algae   NIES-2736,NIES-2737,NIES-3987,NIES-3988   47414   Nozaki H, Ueki N, Isaka N, Saigo T, Yamamoto K, Matsuzaki R, Takahashi F, Wakabayashi KI, Kawachi M.   A New Morphological Type of Volvox from Japanese Large Lakes and Recent Divergence of this Type and V. ferrisii in Two Different Freshwater Habitats.   PLoS ONE   2016   11(11)   e0167148   27880842   10.1371/journal.pone.0167148  
DNA material   pcDNA3.1-hTRPV1-FLAG WT (RDB14587), pcDNA3.1-hTRPV1-FLAG-C158A (...   47635   Ohbuchi K, Mori Y, Ogawa K, Warabi E, Yamamoto M, Hirokawa T.   Detailed Analysis of the Binding Mode of Vanilloids to Transient Receptor Potential Vanilloid Type I (TRPV1) by a Mutational and Computational Study.   PLoS ONE   2016   11(9)   e0162543   27606946   10.1371/journal.pone.0162543  
General Microbes   JCM 2873, JCM 7671, JCM 7672, JCM 7673,...   48516   Ojima-Kato T, Yamamoto N, Takahashi H, Tamura H   Matrix-assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry (MALDI-TOF MS) Can Precisely Discriminate the Lineages of Listeria monocytogenes and Species of Listeria.   PLoS ONE   2016   11   e0159730   27442502   10.1371/journal.pone.0159730  
Mice   DS/Shi(RBRC03706)   36685   Okamoto K, Koda M, Okamoto T, Onoyama T, Miyoshi K, Kishina M, Kato J, Tokunaga S, Sugihara TA, Hara Y, Hino K, Murawaki Y.   A Series of microRNA in the Chromosome 14q32.2 Maternally Imprinted Region Related to Progression of Non-Alcoholic Fatty Liver Disease in a Mouse Model.   PLoS ONE   2016   11(5)   e0154676   27135827   10.1371/journal.pone.0154676  
Drosophila     47656   Schmid MR, Anderl I, Vo HT, Valanne S, Yang H, Kronhamn J, Rämet M, Rusten TE, Hultmark D.   Genetic Screen in Drosophila Larvae Links ird1 Function to Toll Signaling in the Fat Body and Hemocyte Motility.   PLoS ONE   2016   11(7)   e0159473   27467079   10.1371/journal.pone.0159473  
DNA material   AxCALacZ (RDB01745); AxCAZ3-F/RGD (RDB02194); A...   36054   Shen YH, Yang F, Wang H, Cai ZJ, Xu YP, Zhao A, Su Y, Zhang G, Zhu SX.   Arg-Gly-Asp (RGD)-Modified E1A/E1B Double Mutant Adenovirus Enhances Antitumor Activity in Prostate Cancer Cells In Vitro and in Mice.   PLoS ONE   2016   11(1)   e0147173   26799485   10.1371/journal.pone.0147173  
Rats   WTC.DMY-Mrs2dmy/Kyo (strainID=19)   47325   Shimotsuma Y, Tanaka M, Izawa T, Yamate J, Kuwamura M.   Enhanced Expression of Trib3 during the Development of Myelin Breakdown in dmy Myelin Mutant Rats.   PLoS ONE   2016   11(12)   e0168250   27977799   10.1371/journal.pone.0168250  
Algae   NIES-44,NIES-87,NIES-88,NIES-89,NIES-90,...   37464   Sun LW, Jiang WJ, Sato H, Kawachi M, Lu XW.   Rapid Classification and Identification of Microcystis aeruginosa Strains Using MALDI-TOF MS and Polygenetic Analysis.   PLoS ONE   2016   11(5)   e0156275   27227555   10.1371/journal.pone.0156275  
DNA material   8x3'Gli-BS-delta51-LucII (RDB08061)   45607   Torrado B, Graña M, Badano JL, Irigoín F.   Ciliary Entry of the Hedgehog Transcriptional Activator Gli2 Is Mediated by the Nuclear Import Machinery but Differs from Nuclear Transport in Being Imp-α/β1-Independent.   PLoS ONE   2016   11(8)   e0162033   27579771   10.1371/journal.pone.0162033  
Mice   C57BL/6-Tg(CAG-flpe)37Ito/ItoRbrc(RBRC01835)   39514   Tsuchida J, Matsusaka T, Ohtsuka M, Miura H, Okuno Y, Asanuma K, Nakagawa T, Yanagita M, Mori K.   Establishment of Nephrin Reporter Mice and Use for Chemical Screening.   PLoS ONE   2016   11(6)   e0157497   27362433   10.1371/journal.pone.0157497  
General Microbes   JCM 2413   48515   Tsukada M, Nakashima T, Kamachi T, Niwano Y   Prooxidative Potential of Photo-Irradiated Aqueous Extracts of Grape Pomace, a Recyclable Resource from Winemaking Process.   PLoS ONE   2016   11   e0158197   27341398   10.1371/journal.pone.0158197  
Human and Animal Cells   ATDC5(RCB0565)   37878   Wang Z, Iida A, Miyake N, Nishiguchi KM, Fujita K, Nakazawa T, Alswaid A, Albalwi MA, Kim OH, Cho TJ, Lim GY, Isidor B, David A, Rustad CF, Merckoll E, Westvik J, Stattin EL, Grigelioniene G, Kou I, Nakajima M, Ohashi H, Smithson S, Matsumoto N, Nishimura G, Ikegawa S.   Axial Spondylometaphyseal Dysplasia Is Caused by C21orf2 Mutations.   PLoS ONE   2016   11(3)   e0150555   26974433   10.1371/journal.pone.0150555  
Yeast   BY9943 (SCU2422)   47300   Yeasmin AM, Waliullah TM, Kondo A, Kaneko A, Koike N, Ushimaru T.   Orchestrated Action of PP2A Antagonizes Atg13 Phosphorylation and Promotes Autophagy after the Inactivation of TORC1.   PLoS ONE   2016   11(12)   e0166636   27973551   10.1371/journal.pone.0166636  
Medaka   olsp48d24 olsp35n14, olsp62a16, olec36d21,olec36g08   36417   Kikuta A, Furukawa E, Ogawa R, Suganuma N, Saitoh M, Nishimaki T, Katsumura T, Oota H, Kawamoto T, Tatsukawa H, Hashimoto H, Hitomi K.   Biochemical Characterization of Medaka (Oryzias latipes) Transglutaminases, OlTGK1 and OlTGK2, as Orthologues of Human Keratinocyte-Type Transglutaminase.   PLoS ONE   2015 -12 -29   10(12)   e0144194   26713442   10.1371/journal.pone.0144194  
General Microbes   JCM 5344, JCM 1192   41066   Nishibayashi R, Inoue R, Harada Y, Watanabe T, Makioka Y, Ushida K.   RNA of Enterococcus faecalis Strain EC-12 Is a Major Component Inducing Interleukin-12 Production from Human Monocytic Cells.   PLoS ONE   2015 -11   10(6)   e0129806   26083838   10.1371/journal.pone.0129806  
General Microbes   JCM 21281   41046   Shimoshige H, Kobayashi H, Mizuki T, Nagaoka Y, Inoue A, Maekawa T.   Effect of Polyethylene Glycol on the Formation of Magnetic Nanoparticles Synthesized by Magnetospirillum magnetotacticum MS-1.   PLoS ONE   2015 -10   10(5)   e0127481   25993286   10.1371/journal.pone.0127481  
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