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Species Resource name RRC ID Author Title Journal Published Volume Pages Pubmed ID DOI
Silkworms   o26,w05   50400   Zhang H, Kiuchi T, Wang L, Kawamoto M, Suzuki Y, Sugano S, Banno Y, Katsuma S, Shimada T.   Bm-muted, orthologous to mouse muted and encoding a subunit of the BLOC-1 complex, is responsible for the otm translucent mutation of the silkworm Bombyx mori.   Gene   2017 -8 -3   629   92-100   28768207   10.1016/j.gene.2017.07.071  
Medaka   ci-Tg(Actb-GH:GFP) (TG958)   35979   Komine R, Nishimaki T, Kimura T, Oota H, Naruse K, Homma N, Fukamachi S.   Transgenic medaka that overexpress growth hormone have a skin color that does not indicate the activation or inhibition of somatolactin-α signal.   Gene   2016 -3 -8   584(1)   38-46   26945627   10.1016/j.gene.2016.02.046  
Algae   NIES-765,NIES-1966,NIES-2842   37161   Kawachi M, Kataoka T, Sato M, Noël MH, Kuwata A, Demura M, Yamaguchi H.   Application of cryopreservation to genetic analyses of a photosynthetic picoeukaryote community.   Gene   2015 -10 -28   576(2 Pt 1)   708-16   26506442   10.1016/j.gene.2015.10.033  
Silkworms     36149   Kawamoto M, Koga H, Kiuchi T, Shoji K, Sugano S, Shimada T, Suzuki Y, Katsuma S.   Sexually biased transcripts at early embryonic stages of the silkworm depend on the sex chromosome constitution.   Gene   2015 -1 -24   560(1)   50-6   25615878   10.1016/j.gene.2015.01.036  
DNA material   Hamp1(-2018)-luc (RDB13383); dn-c-fos (delta133-1...   34857   Kanamori Y, Murakami M, Matsui T, Funaba M.   The regulation of hepcidin expression by serum treatment: requirements of the BMP response element and STAT- and AP-1-binding sites.   Gene   2014 -8 -26   551(2)   119-26   25151311   10.1016/j.gene.2014.08.037  
Drosophila     47079   Pan J, Jin LH.   Rgn gene is required for gut cell homeostasis after ingestion of sodium dodecyl sulfate in Drosophila.   Gene   2014 -7 -30   549(1)   141-8   25064488   10.1016/j.gene.2014.07.057  
Arabidopsis / Cultured plant cells, genes   pdp22549, pdp24435, pdp25460, pdp25667,...   30792   Ito K, Ren J, Fujita T.   Conserved function of Rho-related Rop/RAC GTPase signaling in regulation of cell polarity in Physcomitrella patens.   Gene   2014 -4 -29   544(2)   241-7   24769554   10.1016/j.gene.2014.04.057  
DNA material   pLucB (RDB13157); rat BSP pLuc1 (RDB13144); rat...   34861   Takai H, Matsumura H, Matsui S, Kim KM, Mezawa M, Nakayama Y, Ogata Y.   Unliganded estrogen receptor α stimulates bone sialoprotein gene expression.   Gene   2014 -2 -6   539(1)   50-7   24495337   10.1016/j.gene.2014.01.063  
Arabidopsis / Cultured plant cells, genes   rpc00032, rpc00033, rpc00034   30779   Tek AL, Kashihara K, Murata M, Nagaki K.   Identification of the centromere-specific histone H3 variant in Lotus japonicus.   Gene   2014 -1 -28   538(1)   8-11   24462968   10.1016/j.gene.2014.01.034  
Lotus / Glycine   L. japonicus   31000   Tek AL, Kashihara K, Murata M, Nagaki K.   Identification of the centromere-specific histone H3 variant in Lotus japonicus.   Gene   2014 -1 -28   538(1)   8-11   24462968   10.1016/j.gene.2014.01.034  
DNA material   YTHDC2 -261/+159FLuc (RDB13161); HDAC1-pcDNA3.1 m...   33291   Tanabe A, Konno J, Tanikawa K, Sahara H.   Transcriptional machinery of TNF-α-inducible YTH domain containing 2 (YTHDC2) gene.   Gene   2013 -11 -26   535(1)   24-32   24269672   10.1016/j.gene.2013.11.005  
Yeast   BY4329(SH4329), BY4331(SH4331), BY19501(H50...   35133   Sangwallek J, Kaneko Y, Tsukamoto T, Marui M, Sugiyama M, Ono H, Bamba T, Fukusaki E, Harashima S.   Cloning and functional analysis of HpFAD2 and HpFAD3 genes encoding Δ12- and Δ15-fatty acid desaturases in Hansenula polymorpha.   Gene   2013 -10 -9   533(1)   110-8   24100086   10.1016/j.gene.2013.09.115  
Human and Animal Cells     44596   Matsuo T, Noguchi Y, Shindo M, Morita Y, Oda Y, Yoshida E, Hamada H, Harada M, Shiokawa Y, Nishida T, Tominaga R, Kikushige Y, Akashi K, Kudoh J, Shimizu N, Tanaka Y, Umemura T, Taniguchi T, Yoshimura A, Kobayashi T, Mitsuyama M, Kurisaki H, Katsuta H, Nagafuchi S.   Regulation of human autoimmune regulator (AIRE) gene translation by miR-220b.   Gene   2013 -8 -21   530(1)   19-25   23954874   10.1016/j.gene.2013.08.015  
Silkworms   cDNA clones   29686   Shoji K, Kiuchi T, Hara K, Kawamoto M, Kawaoka S, Arimura S, Tsutsumi N, Sugano S, Suzuki Y, Shimada T, Katsuma S.   Characterization of a novel chromodomain-containing gene from the silkworm, Bombyx mori.   Gene   2013 -7 -16   527(2)   649-54   23850730   10.1016/j.gene.2013.06.071  
C.elegans   tm918, tm1346   46043   Lee JY, Kim C, Kim J, Park C.   DJR-1.2 of Caenorhabditis elegans is induced by DAF-16 in the dauer state.   Gene   2013 -4 -30   524(2)   373-6   23624124   10.1016/j.gene.2013.04.032  
Drosophila     22010   Ly LL, Suyari O, Yoshioka Y, Tue NT, Yoshida H, Yamaguchi M.   dNF-YB plays dual roles in cell death and cell differentiation during Drosophila eye development.   Gene   2013 -3 -9   520(2)   106-18   23470843   10.1016/j.gene.2013.02.036  
Mice   Akt/TUA (RBRC01238)   19143   Sasaki N, Yamauchi H, Tomohiro N, Agui T.   The telocentric tandem repeat at the p-arm is not conserved in Mus musculus subspecies.   Gene   2012 -11 -3   513(1)   214-8   23116940   10.1016/j.gene.2012.10.050  
Human and Animal Cells     43855   Suzuki H, Suzuki A, Maekawa Y, Shiraishi S, Tamura TA.   Interplay between two myogenesis-related proteins: TBP-interacting protein 120B and MyoD.   Gene   2012 -5 -23   504(2)   213-9   22613845   10.1016/j.gene.2012.05.022  
Mice   BALB.B/Ola   17492   Tashiro-Yamaji J, Shimizu T, Hayashi M, Yamana H, Tanigawa N, Uchiyama K, Kubota T, Yoshida R.   Specific binding of HLA-B44 to human macrophage MHC receptor 1 on monocytes.   Gene   2012 -4 -25   501(2)   127-34   22525042   10.1016/j.gene.2012.04.020  
Silkworms     22785   Sugahara R, Mon H, Lee JM, Kusakabe T.   Monoubiquitination-dependent chromatin loading of FancD2 in silkworms, a species lacking the FA core complex.   Gene   2012 -4 -20   501(2)   180-7   22513077   10.1016/j.gene.2012.03.071  
Human and Animal Cells     43747   Hashimoto O, Takagi R, Yanuma F, Doi S, Shindo J, Endo H, Hasegawa Y, Shimasaki S.   Identification and characterization of canine growth differentiation factor-9 and its splicing variant.   Gene   2012 -3 -27   499(2)   266-72   22446043   10.1016/j.gene.2012.03.003  
Drosophila   stocks from the Drosophila Genetic Resource Center ...   15407   Suyari O, Kawai M, Ida H, Yoshida H, Sakaguchi K, Yamaguchi M.   Differential requirement for the N-terminal catalytic domain of the DNA polymerase ε p255 subunit in the mitotic cell cycle and the endocycle.   Gene   2012 -1 -17   495(2)   104-14   22245183   10.1016/j.gene.2011.12.056  
C.elegans   tm541   46080   Feng H, Reece-Hoyes JS, Walhout AJ, Hope IA.   A regulatory cascade of three transcription factors in a single specific neuron, DVC, in Caenorhabditis elegans.   Gene   2011 -12 -31   494(1)   73-84   22207033   10.1016/j.gene.2011.11.042  
Tomato   TOMJPF00001   27322   Aouini A, Matsukura C, Ezura H, Asamizu E.   Characterisation of 13 glutamate receptor-like genes encoded in the tomato genome by structure, phylogeny and expression profiles.   Gene   2011 -12 -7   493(1)   36-43   22143033   10.1016/j.gene.2011.11.037  
Medaka   d-rR, AD-1/GFP (TG126)   12781   Maruyama K, Wang B, Ishikawa Y, Yasumasu S, Iuchi I.   1kbp 5' upstream sequence enables developmental stage-specific expressions of globin genes in the fish, medaka Oryzias latipes.   Gene   2011 -11 -5   492(1)   212-9   22051778   10.1016/j.gene.2011.10.026  
General Microbes   JCM 10545   15837   Yamazaki S, Yoshinari S, Kita K, Watanabe Y, Kawarabayasi Y.   Identification of an entire set of tRNA molecules and characterization of cleavage sites of the intron-containing tRNA precursors in acidothermophilic crenarchaeon Sulfolobus tokodaii strain7.   Gene   2011 -8 -30   489(2)   103-10   21872648   10.1016/j.gene.2011.08.003  
Pathogenic microorganisms, Human and Animal Cells, Prokaryotes E. coli   THP-1 (RCB1189), GTC 00819, pBAD33, pAH69, ...   18249   Shimizu T, Ohta Y, Tsutsuki H, Noda M.   Construction of a novel bioluminescent reporter system for investigating Shiga toxin expression of enterohemorrhagic Escherichia coli.   Gene   2011 -1 -26   478(1-2)   1-10   21262333   10.1016/j.gene.2011.01.006  
Human and Animal Cells     38586   Fujita T, Fujii H.   Species-specific 5'-genomic structure and multiple transcription start sites in the chicken Pax5 gene.   Gene   2011 -1 -19   477(1-2)   24-31   21241785   10.1016/j.gene.2011.01.008  
General Microbes   JCM 2423   11469   Yokoi KJ, Harada Y, Shozen K, Satomi M, Taketo A, Kodaira K.   Characterization of the histidine decarboxylase gene of Staphylococcus epidermidis TYH1 coded on the staphylococcal cassette chromosome.   Gene   2011 -1 -18   477(1-2)   32-41   21236322   10.1016/j.gene.2011.01.003  
Cellular slime molds   G90043, G90044, G90045, G90046, G90047...   30951   Dubin M, Nellen W.   A versatile set of tagged expression vectors to monitor protein localisation and function in Dictyostelium.   Gene   2010 -7 -6   465(1-2)   1-8   20600701   10.1016/j.gene.2010.06.010  
Human and Animal Cells   Hepa 1-6 (RCB1638) NIH3T3-3-4 (RCB1862)   6824   Matsubara S, Takahashi T, Kimura AP.   Epigenetic patterns at the mouse prolyl oligopeptidase gene locus suggest the CpG island in the gene body to be a novel regulator for gene expression.   Gene   2010 -7 -6   465(1-2)   17-29   20600704   10.1016/j.gene.2010.06.006  
Rice   W2003, W2145, W0643, W0652, W1625, ...   6978   Kumagai M, Wang L, Ueda S.   Genetic diversity and evolutionary relationships in genus Oryza revealed by using highly variable regions of chloroplast DNA.   Gene   2010 -5 -11   462(1-2)   44-51   20450965   10.1016/j.gene.2010.04.013  
Medaka   HNI-II (IB176), KAGA inbred strain (IB833), ...   11436   Hirayama M, Mukai T, Miya M, Murata Y, Sekiya Y, Yamashita T, Nishida M, Watabe S, Oda S, Mitani H.   Intraspecific variation in the mitochondrial genome among local populations of Medaka Oryzias latipes.   Gene   2010 -3 -3   457(1-2)   13-24   20193748   10.1016/j.gene.2010.02.012  
Medaka   HdrR-II1 (IB178)   5841   Tani S, Kusakabe R, Naruse K, Sakamoto H, Inoue K.   Genomic organization and embryonic expression of miR-430 in medaka (Oryzias latipes): insights into the post-transcriptional gene regulation in early development.   Gene   2009 -9 -23   449(1-2)   41-9   19770025   10.1016/j.gene.2009.09.005  
Medaka   HdrR-II1 (IB178), O. luzonensis (RS270), Maiz...   30655   Katsumura T, Oda S, Mano S, Suguro N, Watanabe K, Mitani H, Oota H, Kawamura S.   Genetic differentiation among local populations of medaka fish (Oryzias latipes) evaluated through grid- and deme-based sampling.   Gene   2009 -4 -29   443(1-2)   170-7   19397956   10.1016/j.gene.2009.04.017  
Medaka   ci (MT15), Tg(Actb-SLa:GFP) (TG1147)   30918   Fukamachi S, Yada T, Meyer A, Kinoshita M.   Effects of constitutive expression of somatolactin alpha on skin pigmentation in medaka.   Gene   2009 -4 -28   442(1-2)   81-7   19393303   10.1016/j.gene.2009.04.010  
Silkworms   Samia cynthia ricini, p50   11255   Kawaoka S, Katsuma S, Meng Y, Hayashi N, Mita K, Shimada T.   Identification and characterization of globin genes from two lepidopteran insects, Bombyx mori and Samia cynthia ricini.   Gene   2008 -12 -9   431(1-2)   33-8   19059317   10.1016/j.gene.2008.11.004  
Cellular slime molds   G02489   6755   Siltberg-Liberles J, Steen IH, Svebak RM, Martinez A.   The phylogeny of the aromatic amino acid hydroxylases revisited by characterizing phenylalanine hydroxylase from Dictyostelium discoideum.   Gene   2008 -10 -7   427(1-2)   86-92   18835579   10.1016/j.gene.2008.09.005  
Human and Animal Cells   10T1/2 (RCB0247) C2C12 (RCB0987) MC3T3-E1(RCB1126...   10800   Yamauchi M, Kawai S, Kato T, Ooshima T, Amano A.   Odd-skipped related 1 gene expression is regulated by Runx2 and Ikzf1 transcription factors.   Gene   2008 -9 -23   426(1-2)   81-90   18804520   10.1016/j.gene.2008.08.015  
Drosophila     11126   Urasaki A, Mito T, Noji S, Ueda R, Kawakami K.   Transposition of the vertebrate Tol2 transposable element in Drosophila melanogaster.   Gene   2008 -9 -9   425(1-2)   64-8   18775483   10.1016/j.gene.2008.08.008  
Zebrafish   ?   5585   Urasaki A, Mito T, Noji S, Ueda R, Kawakami K.   Transposition of the vertebrate Tol2 transposable element in Drosophila melanogaster.   Gene   2008 -9 -9   425(1-2)   64-8   18775483   10.1016/j.gene.2008.08.008  
Human and Animal Cells     43401   Sun C, Wu Z, Jia F, Wang Y, Li T, Zhao M.   Identification of zebrafish LPTS: a gene with similarities to human LPTS/PinX1 that inhibits telomerase activity.   Gene   2008 -6 -28   420(1)   90-8   18583067   10.1016/j.gene.2008.05.013  
General Microbes   JCM 1130, JCM 2151, JCM 2416, JCM 2418,...   15640   Yokoi KJ, Sugahara K, Iguchi A, Nishitani G, Ikeda M, Shimada T, Inagaki N, Yamakawa A, Taketo A, Kodaira K.   Molecular properties of the putative autolysin Atl(WM) encoded by Staphylococcus warneri M: mutational and biochemical analyses of the amidase and glucosaminidase domains.   Gene   2008 -4 -29   416(1-2)   66-76   18440165   10.1016/j.gene.2008.03.004  
Human and Animal Cells     43285   Tse MC, Chan KM, Cheng CH.   Cloning, characterization and promoter analysis of the common carp IGF-II gene.   Gene   2008 -4 -15   412(1-2)   26-38   18304762   10.1016/j.gene.2007.12.023  
Yeast   BY23850(BY4742), BY5209(SH5209, FY833), ...   2247   Hirasaki M, Kaneko Y, Harashima S.   Protein phosphatase Siw14 controls intracellular localization of Gln3 in cooperation with Npr1 kinase in Saccharomyces cerevisiae.   Gene   2008 -1 -2   409(1-2)   34-43   18166280   10.1016/j.gene.2007.11.005  
General Microbes   JCM1131   5013   Sugahara K, Yokoi KJ, Nakamura Y, Nishino T, Yamakawa A, Taketo A, Kodaira K.   Mutational and biochemical analyses of the endolysin Lys(gaY) encoded by the Lactobacillus gasseri JCM 1131T phage phi gaY.   Gene   2007 -10 -9   404(1-2)   41-52   17920212   10.1016/j.gene.2007.08.023  
Algae   NIES-228   20390   Sasaki G, Katoh K, Hirose N, Suga H, Kuma K, Miyata T, Su ZH.   Multiple receptor-like kinase cDNAs from liverwort Marchantia polymorpha and two charophycean green algae, Closterium ehrenbergii and Nitella axillaris: Extensive gene duplications and gene shufflings in the early evolution of streptophytes.   Gene   2007 -8 -19   401(1-2)   135-44   17698300   10.1016/j.gene.2007.07.009  
Prokaryotes E. coli   pAB2001   3322   Liu Y, Ichige A, Kobayashi I.   Regulation of the EcoRI restriction-modification system: Identification of ecoRIM gene promoters and their upstream negative regulators in the ecoRIR gene.   Gene   2007 -7 -10   400(1-2)   140-9   17618069   10.1016/j.gene.2007.06.006  
Cellular slime molds   G02201, G21765   6743   Kalavrizioti D, Vourekas A, Drainas D.   DRpp20 and DRpp40: Two protein subunits involved in Dictyostelium discoideum ribonuclease P holoenzyme assembly.   Gene   2007 -7 -6   400(1-2)   52-9   17611045   10.1016/j.gene.2007.05.020  
Tropical clawed frog     2524   Xi Y, Obara M, Ishida Y, Ikeda S, Yoshizato K.   Gene expression and tissue distribution of cytoglobin and myoglobin in the Amphibia and Reptilia: possible compensation of myoglobin with cytoglobin in skeletal muscle cells of anurans that lack the myoglobin gene.   Gene   2007 -6 -15   398(1-2)   94-102   17560742   10.1016/j.gene.2007.01.040  
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