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Species Resource name RRC ID Author Title Journal Published Volume Pages Pubmed ID DOI
Medaka   naruto^j113-2B (MT402), OK-Cab (MT830)   47681   Sasado T, Kondoh H, Furutani-Seiki M, Naruse K.   Mutation in cpsf6/CFIm68 (Cleavage and Polyadenylation Specificity Factor Subunit 6) causes short 3'UTRs and disturbs gene expression in developing embryos, as revealed by an analysis of primordial germ cell migration using the medaka mutant naruto.   PLoS One   2017 -3 -3   12(3)   e0172467   28253363   10.1371/journal.pone.0172467  
Medaka   hatching enzyme, d-rR/TOKYO (MT837)   47704   Nakano M, Arai Y, Kotera I, Okabe K, Kamei Y, Nagai T.   Genetically encoded ratiometric fluorescent thermometer with wide range and rapid response.   PLoS One   2017 -2 -18   12(2)   e0172344   28212432   10.1371/journal.pone.0172344  
Medaka   Simcheon(WS267), Samsan(WS266), Guhang(WS265...   47781   Igarashi K, Kobayashi J, Katsumura T, Urushihara Y, Hida K, Watanabe-Asaka T, Oota H, Oda S, Mitani H.   An Approach to Elucidate NBS1 Function in DNA Repair Using Frequent Nonsynonymous Polymorphism in Wild Medaka (Oryzias latipes) Populations.   PLoS One   2017 -1 -21   12(1)   e0170006   28107384   10.1371/journal.pone.0170006  
DNA material   pBSIISK-SYN-GFP-BGHpA (RDB15107); pENTR1A-CMV-GFP...   48887   Sohn J, Takahashi M, Okamoto S, Ishida Y, Furuta T, Hioki H.   A Single Vector Platform for High-Level Gene Transduction of Central Neurons: Adeno-Associated Virus Vector Equipped with the Tet-Off System.   PLoS ONE   2017 -1 -7   12(1)   e0169611   28060929   10.1371/journal.pone.0169611  
Drosophila   10067R-1,10067R-2,15009R-1,15009R-3,5889R-1...   47783   Nakaoka T, Iga M, Yamada T, Koujima I, Takeshima M, Zhou X, Suzuki Y, Ogihara MH, Kataoka H.   Deep sequencing of the prothoracic gland transcriptome reveals new players in insect ecdysteroidogenesis.   PLoS One   2017   12(3)   e0172951   28257485   10.1371/journal.pone.0172951  
Drosophila   4807R-2,17156R-1,17156R-2   34863   Doggett K, Turkel N, Willoughby LF, Ellul J, Murray MJ, Richardson HE, Brumby AM.   BTB-Zinc Finger Oncogenes Are Required for Ras and Notch-Driven Tumorigenesis in Drosophila.   PLoS One   2015   10(7)   e0132987   26207831   10.1371/journal.pone.0132987  
Drosophila   DGRC#112830, DGRC#115074   36162   Kis V, Barti B, Lippai M, Sass M.   Specialized Cortex Glial Cells Accumulate Lipid Droplets in Drosophila melanogaster.   PLoS One   2015   10(7)   e0131250   26148013   10.1371/journal.pone.0131250  
Drosophila   DGRC#105921 DGRC#112640 DGRC#113080 DGRC#112482   36258   Tachibana S, Touhara K, Ejima A.   Modification of Male Courtship Motivation by Olfactory Habituation via the GABAA Receptor in Drosophila melanogaster.   PLoS One   2015   10(8)   e0135186   26252206   10.1371/journal.pone.0135186  
Drosophila   1004R-3,1007R-1,1017R-3,1019R-1,1019R-3...   35111   Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K.   A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction.   PLoS One   2015   10(10)   e0140976   26488612   10.1371/journal.pone.0140976  
Drosophila   8896R-2,3705R-1,9749R-2,7978R-3,18290R-3...   31967   Umetsu D, Dunst S, Dahmann C.   An RNA interference screen for genes required to shape the anteroposterior compartment boundary in Drosophila identifies the Eph receptor.   PLoS One   2014 -12 -4   9(12)   e114340   25473846   10.1371/journal.pone.0114340  
Drosophila   NP0793 (DGRC#112334), NP1240 (DGRC#103952 or ...   32492   López-Falcón B, Meyer-Nava S, Hernández-Rodríguez B, Campos A, Montero D, Rudiño E, Vázquez M, Zurita M, Valadez-Graham V.   Characterization of the Drosophila group ortholog to the amino-terminus of the alpha-thalassemia and mental retardation X-Linked (ATRX) vertebrate protein.   PLoS One   2014 -12 -1   9(12)   e113182   25437195   10.1371/journal.pone.0113182  
Drosophila   DGRC#112459   32404   Kuo PH, Tzeng TH, Huang YC, Chen YH, Chang YC, Ho YL, Wu JT, Lee HH, Lai PJ, Liu KY, Cheng YC, Lu SS.   Non-invasive Drosophila ECG recording by using eutectic gallium-indium alloy electrode: a feasible tool for future research on the molecular mechanisms involved in cardiac arrhythmia.   PLoS One   2014 -9 -16   9(9)   e104543   25226390   10.1371/journal.pone.0104543  
Drosophila   DGRC#113084   32435   Schmid MR, Anderl I, Vesala L, Vanha-aho LM, Deng XJ, Rämet M, Hultmark D.   Control of Drosophila blood cell activation via Toll signaling in the fat body.   PLoS One   2014 -8 -7   9(8)   e102568   25102059   10.1371/journal.pone.0102568  
Drosophila   11207R-2,12165R-3,6620R-2   32800   Kitazawa D, Matsuo T, Kaizuka K, Miyauchi C, Hayashi D, Inoue YH.   Orbit/CLASP is required for myosin accumulation at the cleavage furrow in Drosophila male meiosis.   PLoS One   2014 -5 -21   9(5)   e93669   24850412   10.1371/journal.pone.0093669  
Drosophila   6117R-2,6117R-2   30808   Wentzell JS, Cassar M, Kretzschmar D.   Organophosphate-induced changes in the PKA regulatory function of Swiss Cheese/NTE lead to behavioral deficits and neurodegeneration.   PLoS One   2014 -2 -18   9(2)   e87526   24558370   10.1371/journal.pone.0087526  
Drosophila   tws02414 (DGRC#108872).   32552   Bose A, Majot AT, Bidwai AP.   The Ser/Thr phosphatase PP2A regulatory subunit widerborst inhibits notch signaling.   PLoS One   2014   9(7)   e101884   25006677   10.1371/journal.pone.0101884  
Drosophila   6859R-4, DaG32 (DGRC#108252)   30820   Faust JE, Manisundaram A, Ivanova PT, Milne SB, Summerville JB, Brown HA, Wangler M, Stern M, McNew JA.   Peroxisomes are required for lipid metabolism and muscle function in Drosophila melanogaster.   PLoS One   2014   9(6)   e100213   24945818   10.1371/journal.pone.0100213  
Drosophila   ubiECad-GFP, sGMCA, zipperCPTI002907 (DGRC#115383...   32507   Fischer SC, Blanchard GB, Duque J, Adams RJ, Arias AM, Guest SD, Gorfinkiel N.   Contractile and mechanical properties of epithelia with perturbed actomyosin dynamics.   PLoS One   2014   9(4)   e95695   24759936   10.1371/journal.pone.0095695  
Drosophila   DGRC#104052, DGRC#104540   28844   Fitzsimons HL, Schwartz S, Given FM, Scott MJ.   The histone deacetylase HDAC4 regulates long-term memory in Drosophila.   PLoS One   2013 -12 -9   8(12)   e83903   24349558   10.1371/journal.pone.0083903  
Drosophila   DGRC#202656   28865   Zhang C, Hong Z, Ma W, Ma D, Qian Y, Xie W, Tie F, Fang M.   Drosophila UTX coordinates with p53 to regulate ku80 expression in response to DNA damage.   PLoS One   2013 -11 -12   8(11)   e78652   24265704   10.1371/journal.pone.0078652  
Medaka   database, d-rR/TOKYO (MT837), full length cDNA   30607   Takeuchi A, Okubo K.   Post-proliferative immature radial glial cells female-specifically express aromatase in the medaka optic tectum.   PLoS One   2013 -8   8(9)   e73663   24019933   10.1371/journal.pone.0073663  
Drosophila   DGRC#115159, DGRC#115284   32481   Yamamoto S, Bayat V, Bellen HJ, Tan C.   Protein phosphatase 1ß limits ring canal constriction during Drosophila germline cyst formation.   PLoS One   2013 -7 -25   8(7)   e70502   23936219   10.1371/journal.pone.0070502  
Medaka   d-rR/TOKYO (MT837), BAC clone, d-rR-Tg(beta-...   28612   Okuyama T, Isoe Y, Hoki M, Suehiro Y, Yamagishi G, Naruse K, Kinoshita M, Kamei Y, Shimizu A, Kubo T, Takeuchi H.   Controlled Cre/loxP site-specific recombination in the developing brain in medaka fish, Oryzias latipes.   PLoS One   2013 -6   8(6)   e66597   23825546   10.1371/journal.pone.0066597  
Drosophila   NP5328 (DGRC#104954), NP3312 (DGRC#113216)   22016   Shen W, Chen X, Cormier O, Cheng DC, Reed B, Harden N.   Modulation of morphogenesis by Egfr during dorsal closure in Drosophila.   PLoS One   2013 -4 -8   8(4)   e60180   23579691   10.1371/journal.pone.0060180  
Medaka   database (atlas), d-rR/TOKYO (MT837)   30612   Kanda S, Akazome Y, Mitani Y, Okubo K, Oka Y.   Neuroanatomical evidence that kisspeptin directly regulates isotocin and vasotocin neurons.   PLoS One   2013 -4   8(4)   e62776   23638144   10.1371/journal.pone.0062776  
Drosophila   NP2592 (DGRC#104251), GS3245 (DGRC#200582), G...   22015   Li X, Zhuo R, Tiong S, Di Cara F, King-Jones K, Hughes SC, Campbell SD, Wevrick R.   The Smc5/Smc6/MAGE complex confers resistance to caffeine and genotoxic stress in Drosophila melanogaster.   PLoS One   2013 -3 -28   8(3)   e59866   23555814   10.1371/journal.pone.0059866  
Drosophila   NP6510 (DGRC#113956)   22043   Cheng X, Jiang H, Li W, Lv H, Gong Z, Liu L.   Ten-a affects the fusion of central complex primordia in Drosophila.   PLoS One   2013 -2 -20   8(2)   e57129   23437330   10.1371/journal.pone.0057129  
Drosophila   NP6590 (DGRC#105275)   22042   Hopkins PC.   Neurodegeneration in a Drosophila model for the function of TMCC2, an amyloid protein precursor-interacting and apolipoprotein E-binding protein.   PLoS One   2013 -2 -7   8(2)   e55810   23409049   10.1371/journal.pone.0055810  
Medaka   HBK11-Tg(Tyr-p-loxp-EGFP-loxp-HRASG12V)3 (TG925),...   30604   Matsuzaki Y, Hosokai H, Mizuguchi Y, Fukamachi S, Shimizu A, Saya H.   Establishment of HRAS(G12V) transgenic medaka as a stable tumor model for in vivo screening of anticancer drugs.   PLoS One   2013 -1 -14   8(1)   e54424   23342156   10.1371/journal.pone.0054424  
Medaka   HB11A (IB185), HBK11-Tg(Tyr-p-loxp-EGFP-loxp-HRASG12V)3 (...   20929   Yuriko Matsuzaki, Haru Hosokai, Yukiyo Mizuguchi, Shoji Fukamachi, Atsushi Shimizu, and Hideyuki Saya   Establishment of HRASG12V transgenic medaka as a stable tumor model for in vivo screening of anticancer drugs   PLoS One   2013 -1 -14   8(1)   e54424     10.1371/journal.pone.0054424  
Prokaryotes E. coli   JW5702-KC, ASKA collection   35545   Chong H, Huang L, Yeow J, Wang I, Zhang H, Song H, Jiang R.   Improving ethanol tolerance of Escherichia coli by rewiring its global regulator cAMP receptor protein (CRP).   PLoS One   2013   8(2)   e57628   23469036   10.1371/journal.pone.0057628  
Prokaryotes E. coli   ME9062(BW25113)   35596   Hase Y, Tarusawa T, Muto A, Himeno H.   Impairment of ribosome maturation or function confers salt resistance on Escherichia coli cells.   PLoS One   2013   8(5)   e65747   23741511   10.1371/journal.pone.0065747  
Prokaryotes E. coli, Yeast   ME8568(HB101), CV-63(SY327(Lambdapir)), BYP7574...   35597   Moriguchi K, Yamamoto S, Tanaka K, Kurata N, Suzuki K.   Trans-kingdom horizontal DNA transfer from bacteria to yeast is highly plastic due to natural polymorphisms in auxiliary nonessential recipient genes.   PLoS One   2013   8(9)   e74590   24058593   10.1371/journal.pone.0074590  
Prokaryotes E. coli   ME9062(BW25113), JW0940-KC   35586   Sun D, Wang B, Zhu L, Chen M, Zhan L.   Block and boost DNA transfer: opposite roles of OmpA in natural and artificial transformation of Escherichia coli.   PLoS One   2013   8(3)   e59019   23533598   10.1371/journal.pone.0059019  
Prokaryotes E. coli   JW3903-KC, ME7970(KY2966)   35616   Yuan S, Xu J, Ge Y, Yan Z, Du G, Wang N.   Prokaryotic ubiquitin-like ThiS fusion enhances the heterologous protein overexpression and aggregation in Escherichia coli.   PLoS One   2013   8(4)   e62529   23638106   10.1371/journal.pone.0062529  
Drosophila   DGRC#140078   22039   Kallijärvi J, Stratoulias V, Virtanen K, Hietakangas V, Heino TI, Saarma M.   Characterization of Drosophila GDNF receptor-like and evidence for its evolutionarily conserved interaction with neural cell adhesion molecule (NCAM)/FasII.   PLoS One   2012 -12 -20   7(12)   e51997   23284846   10.1371/journal.pone.0051997  
Drosophila   NP2614 (DGRC#104259)   22038   Eddison M, Belay AT, Sokolowski MB, Heberlein U.   A genetic screen for olfactory habituation mutations in Drosophila: analysis of novel foraging alleles and an underlying neural circuit.   PLoS One   2012 -12 -17   7(12)   e51684   23284741   10.1371/journal.pone.0051684  
Drosophila   1063R-1,1063R-2   21904   Sadaf S, Birman S, Hasan G.   Synaptic activity in serotonergic neurons is required for air-puff stimulated flight in Drosophila melanogaster.   PLoS One   2012 -9 -27   7(9)   e46405   23029511   10.1371/journal.pone.0046405  
Drosophila   5475R-1,7393R-1,5680R-1   21869   Gonda RL, Garlena RA, Stronach B.   Drosophila heat shock response requires the JNK pathway and phosphorylation of mixed lineage kinase at a conserved serine-proline motif.   PLoS One   2012 -7 -27   7(7)   e42369   22848763   10.1371/journal.pone.0042369  
Drosophila   GS11655 (DGRC#203493)   22033   Xie G, Zhang H, Du G, Huang Q, Liang X, Ma J, Jiao R.   Uif, a large transmembrane protein with EGF-like repeats, can antagonize Notch signaling in Drosophila.   PLoS One   2012 -4 -30   7(4)   e36362   22558447   10.1371/journal.pone.0036362  
Drosophila   protamineB::GFP (DGRC#109173 or DGRC#109175)   22031   Minami R, Wakabayashi M, Sugimori S, Taniguchi K, Kokuryo A, Imano T, Adachi-Yamada T, Watanabe N, Nakagoshi H.   The homeodomain protein defective proventriculus is essential for male accessory gland development to enhance fecundity in Drosophila.   PLoS One   2012 -3 -12   7(3)   e32302   22427829   10.1371/journal.pone.0032302  
Drosophila   8091R-2   21882   Kanao T, Sawada T, Davies SA, Ichinose H, Hasegawa K, Takahashi R, Hattori N, Imai Y.   The nitric oxide-cyclic GMP pathway regulates FoxO and alters dopaminergic neuron survival in Drosophila.   PLoS One   2012 -2 -29   7(2)   e30958   22393355   10.1371/journal.pone.0030958  
Drosophila   14816R-6, DGRC#109843, DGRC#109844   15574   Ishida Y, Sekine Y, Oguchi H, Chihara T, Miura M, Ichijo H, Takeda K.   Prevention of apoptosis by mitochondrial phosphatase PGAM5 in the mushroom body is crucial for heat shock resistance in Drosophila melanogaster.   PLoS One   2012 -2 -7   7(2)   e30265   22347370   10.1371/journal.pone.0030265  
Prokaryotes E. coli   JW2650-KC, JW4197-KC, JW5437-KC   35475   Cendra Mdel M, Juárez A, Torrents E.   Biofilm modifies expression of ribonucleotide reductase genes in Escherichia coli.   PLoS One   2012   7(9)   e46350   23050019   10.1371/journal.pone.0046350  
Medaka   cDNA, sox9bK16X, sox9bK136X, TILLING_MUTANT,...   30595   Nakamura S, Watakabe I, Nishimura T, Toyoda A, Taniguchi Y, Tanaka M.   Analysis of medaka sox9 orthologue reveals a conserved role in germ cell maintenance.   PLoS One   2012   7(1)   e29982   22253846   10.1371/journal.pone.0029982  
Prokaryotes E. coli   ME9062(BW25113), KP7600?, pNTR-SD, pNT3   35490   Nakao R, Ramstedt M, Wai SN, Uhlin BE.   Enhanced biofilm formation by Escherichia coli LPS mutants defective in Hep biosynthesis.   PLoS One   2012   7(12)   e51241   23284671   10.1371/journal.pone.0051241  
Prokaryotes E. coli   JW3710-KC, JW3715-KC   35439   Sun Y, Fukamachi T, Saito H, Kobayashi H.   Respiration and the F₁Fo-ATPase enhance survival under acidic conditions in Escherichia coli.   PLoS One   2012   7(12)   e52577   23300708   10.1371/journal.pone.0052577  
Prokaryotes E. coli   ME9062(BW25113), JW1477-KC, JW2992-KC, JW...   35501   Zhang Y, Shi C, Yu J, Ren J, Sun D.   RpoS regulates a novel type of plasmid DNA transfer in Escherichia coli.   PLoS One   2012   7(3)   e33514   22438941   10.1371/journal.pone.0033514  
Prokaryotes E. coli   JW5503-KC, JW0451-KC, JW2060-KC, JW3482-K...   35396   Deininger KN, Horikawa A, Kitko RD, Tatsumi R, Rosner JL, Wachi M, Slonczewski JL.   A requirement of TolC and MDR efflux pumps for acid adaptation and GadAB induction in Escherichia coli.   PLoS One   2011   6(4)   e18960   21541325   10.1371/journal.pone.0018960  
Prokaryotes E. coli   ME9033(DH5), ME7986(MG1655), ME8568(HB101),...   35355   Etchuuya R, Ito M, Kitano S, Shigi F, Sobue R, Maeda S.   Cell-to-cell transformation in Escherichia coli: a novel type of natural transformation involving cell-derived DNA and a putative promoting pheromone.   PLoS One   2011   6(1)   e16355   21283723   10.1371/journal.pone.0016355  
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