RRC ID 60991
著者 Lindelof, K. Lindo, J. Zhou, W. Ji, X. Xiang, Q.
タイトル Phylogenomics, biogeography, and evolution of the blue‐ or white‐fruited dogwoods (Cornus)—Insights into morphological and ecological niche divergence following intercontinental geographic isolation
ジャーナル Journal of Systematics and Evolution
Abstract The eastern Asian (EA)–eastern North American (ENA) floristic disjunction represents a major pattern of phytogeography of the Northern Hemisphere. Despite 20 years of studies dedicated to identification of taxa that display this disjunct pattern, its origin and evolution remain an open question, especially regarding post‐isolation evolution. The blue‐ or white‐fruited dogwoods (BW) are the most species‐rich among the four major clades of Cornus L., consisting of ~35 species divided into three subgenera (subg. Yinquania, subg. Mesomora, and subg. Kraniopsis). The BW group provides an excellent example of the EA–ENA floristic disjunction for biogeographic study due to its diversity distribution centered in eastern Asia and eastern North America, yet its species relationships and delineation have remained poorly understood. In this study, we combined genome‐wide markers from RAD‐seq, morphology, fossils, and climate data to understand species relationships, biogeographic history, and ecological niche and morphological evolution. Our phylogenomic analyses with RAxML and MrBayes recovered a strongly supported and well‐resolved phylogeny of the BW group with three intercontinental disjunct clades in EA and ENA or Eurasia and North America, of which two are newly identified within subg. Kraniopsis. These analyses also recovered a potential new species but failed to resolve relationships within the C. hemsleyiC. schindleri complex. In an effort to develop an approach to reduce computation time, analysis of different nodal age settings in treePL suggests setting a node's minimum age constraint to the lower bound of a fossil's age range to obtain similar ages to that of BEAST. Divergence time analyses with BEAST and treePL dated the BW stem back to the very Late Cretaceous and the divergence of the three subgenera in the Paleogene. By integrating fossil ages and morphology, a total evidence‐based dating approach was used in conjunction with time‐slice probabilities of dispersal under a DEC model to resolve ancestral ranges of each disjunct in the Miocene: Eurasia and ENA (disjunct 1), EA and western North America (disjunct 2), and EA (disjunct 3). The dated biogeographic history supports dispersal via the North Atlantic Land Bridge in the late Paleogene in disjunct 1 and dispersal via the Bering Land Bridge in the Miocene for disjuncts 2 and 3. Character mapping with a stochastic model in phytools and comparison of ecological niche, morphospace, and rate of evolution indicated differential divergence patterns in morphology, ecological niche, and molecules between disjunct sisters. Although morphological stasis was observed in most of the characters, evolutionary changes in growth habit and some features of leaf, flower, and fruit morphology occurred in one or both sister clades. A significant differentiation of ecological habitats in temperature, precipitation, and elevation between disjunct sisters was observed, suggesting a role of niche divergence in morphological evolution post‐isolation. The patterns of evolutionary rate between morphology and molecules varied among disjunct clades and were not always congruent between morphology and molecules, suggesting cases of non‐neutral morphological evolution driven by ecological selection. Our phylogenetic evidence and comparisons of evolutionary rate among disjunct lineages lend new insights into the formation of the diversity anomaly between EA and ENA, with particular support of an early diversification in EA. These findings, in conjunction with previous studies, again suggest that the EA–ENA disjunct floras are an assembly of lineages descended from the Mesophytic Forests that evolved from the early Paleogene “boreotropical flora” through varied evolutionary pathways across lineages.
巻・号 58(5)
公開日 2020-8-27
DOI 10.1111/jse.12676
IF 2.779
リソース情報
GBIF Plant specimens of Ishikawa Museum of Natural History Long-term fauna and flora records of the experimental forests of the Forest Research Station of Hokkaido University, Japan Plant specimens of Toyota City Nature Sanctuary Plant specimens of Tochigi Prefectural Museum Plant specimens of Nasunogahara Museum Plant Specimen Database of Tama Forest Science Garden, Forestry and Forest Products Research Institute, Japan Plant specimens of Otaru Museum Plant specimens of Komatsu City Museum Plant specimens of Horaiji-san Museum of Natural History Toji K. collection The 6-7th National Survey on the Natural Environment: Vegetation Survey Vascular plant specimens of Akita Prefectural Museum Vascular plants database of Atsugi City Museum Herbarium, University Archives and Collections, Fukushima University, Japan (FKSE) Angiospermatatophytina Collection of Saitama Museum of Natural History Vascular plant specimens of Iida City Museum Plant specimens of Oiso Municipal Museum Herbarium of Hokkaido University Museum (SAPS) Vascular Plant Collection of Natural History Museum and Institute, Chiba Herbarium Specimens of Museum of Nature and Human Activities, Hyogo Pref., Japan Spermatophyta collection of Museum of Natural and Environmental History, Shizuoka Ibaraki Nature Museum, Vascular Plants collection Vascular plant specimens of National Museum of Nature and Science (TNS) Herbarium Specimens of Tokushima Prefectural Museum, Japan Herbarium of Kitakyushu Museum of Natural History and Human History Plant Specimens of Lake Biwa Museum Spermatophyta specimens of Iwate Prefectural Museum Vascular Plants Collection of Sagamihara City Museum Plant specimens in the Museum of Nature and Human Activities, Hyogo Prefecture, Japan Plant specimens deposited in Osaka Museum of Natural History, Japan Vascular Plant Specimens of Kochi Prefectural Makino Botanical Garden Plant Specimens of The Shimane Nature Museum of Mt. Sanbe Plant specimens of Kiritappu Wetland Center Vascular Plant Specimen database of Kanagawa Prefectural Museum of Natural History Gunma Museum of Natural History, Vascular Plant Specimen Vascular plants collection of Hiratsuka City Museum Plant specimens of Kushiro City Museum Plant specimens of Bihoro Museum Plant specimens of Parthenon Tama Museum (PTHM) Plant specimens of Obihiro Centennial City Museum Plant Observation Records of Japan Tracheophyta collection of Biodiversity Center of Japan, Ministry of the Environment Vascular plant specimens of Aomori City Forestry Museum Vascular plant specimens of Toyama Science Museum The 2-5th National Survey on the Natural Environment: Vegetation Survey