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Species Resource
Medaka cab , HdrR-II1(IB178) CO(2)-driven seawater acidification differentially affects development and molecular plasticity along life history of fish (Oryzias latipes).
Yeast BY4947 Transcription analysis of recombinant industrial and laboratory Saccharomyces cerevisiae strains reveals the molecular basis for fermentation of glucose and xylose.
Lotus / Glycine L. japonicus Tissue-specific transcriptome analysis in nodules of Lotus japonicus.
Pathogenic microorganisms Comparative transcriptome analysis revealing dormant conidia and germination associated genes in Aspergillus species: an essential role for AtfA in conidial dormancy.
C.elegans Glucose or Altered Ceramide Biosynthesis Mediate Oxygen Deprivation Sensitivity Through Novel Pathways Revealed by Transcriptome Analysis in Caenorhabditis elegans.
Prokaryotes E. coli Transcriptome Analysis of Escherichia coli during dGTP Starvation.
Zebrafish Tg(HuC:Kaede)/rw0130a Quantitative proteomics reveals diverse roles of miR-148a from gastric cancer progression to neurological development.
General Microbes JCM 12182 Transcriptome Analysis of Novosphingobium pentaromativorans US6-1 Reveals the Rsh Regulon and Potential Molecular Mechanisms of N-acyl-l-homoserine Lactone Accumulation.
Prokaryotes E. coli K-12 , W3110 Modulation of primary cell function of host Pseudomonas bacteria by the conjugative plasmid pCAR1.
Lotus / Glycine Gifu B-129 RNA-seq Transcriptional Profiling of an Arbuscular Mycorrhiza Provides Insights into Regulated and Coordinated Gene Expression in Lotus japonicus and Rhizophagus irregularis.
Lotus / Glycine Miyakojima MG-20 Polyphosphate accumulation is driven by transcriptome alterations that lead to near-synchronous and near-equivalent uptake of inorganic cations in an arbuscular mycorrhizal fungus.
Tomato TOMJPF00001 Genome-wide identification of pistil-specific genes expressed during fruit set initiation in tomato (Solanum lycopersicum).
Silkworms o751 Identification of functional enolase genes of the silkworm Bombyx mori from public databases with a combination of dry and wet bench processes.
C.elegans tm668 The dsRBP and inactive editor ADR-1 utilizes dsRNA binding to regulate A-to-I RNA editing across the C. elegans transcriptome.
Paramecium P. bursaria , strains Yad1w and Yad1g1N Analysis of amino acid and codon usage in Paramecium bursaria.
Drosophila The Spalt Transcription Factors Generate the Transcriptional Landscape of the Drosophila melanogaster Wing Pouch Central Region.
Algae NIES-843 Nutrients drive transcriptional changes that maintain metabolic homeostasis but alter genome architecture in Microcystis.
Yeast NA Characterization and gene expression profiles of thermotolerant Saccharomyces cerevisiae isolates from Thai fruits.
C.intestinalis / (O.japonicus) Wild C. int Transcriptome dynamics in early embryos of the ascidian, Ciona intestinalis.
Arabidopsis / Cultured plant cells, genes pda07290 , pda18567 , pda02895 , pda08364 , pda02336 , pda03304 , pda06970 , pda06662 , pda01306 , pda19110 , ... Complementarity of medium-throughput in situ RNA hybridization and tissue-specific transcriptomics: case study of Arabidopsis seed development kinetics.