論文 - 詳細
| RRC ID | 11269 |
|---|---|
| 著者 | Duan J, Li R, Cheng D, Fan W, Zha X, Cheng T, Wu Y, Wang J, Mita K, Xiang Z, Xia Q. |
| タイトル | SilkDB v2.0: a platform for silkworm (Bombyx mori ) genome biology. |
| ジャーナル | Nucleic Acids Res |
| Abstract |
The SilkDB is an open-access database for genome biology of the silkworm (Bombyx mori). Since the draft sequence was completed and the SilkDB was first released 5 years ago, we have collaborated with other groups to make much remarkable progress on silkworm genome research, such as the completion of a new high-quality assembly of the silkworm genome sequence as well as the construction of a genome-wide microarray to survey gene expression profiles. To accommodate these new genomic data and house more comprehensive genomic information, we have reconstructed SilkDB database with new web interfaces. In the new version (v2.0) of SilkDB, we updated the genomic data, including genome assembly, gene annotation, chromosomal mapping, orthologous relationship and experiment data, such as microarray expression data, Expressed Sequence Tags (ESTs) and corresponding references. Several new tools, including SilkMap, Silkworm Chromosome Browser (SCB) and BmArray, are developed to access silkworm genomic data conveniently. SilkDB is publicly available at the new URL of http://www.silkdb.org. |
| 巻・号 | 38(Database issue) |
| ページ | D453-6 |
| 公開日 | 2010-1-1 |
| DOI | 10.1093/nar/gkp801 |
| PII | gkp801 |
| PMID | 19793867 |
| PMC | PMC2808975 |
| MeSH | Animals Bombyx / genetics* Computational Biology / methods* Computational Biology / trends Databases, Genetic* Databases, Nucleic Acid* Databases, Protein Expressed Sequence Tags Genomics Humans Information Storage and Retrieval / methods Internet Multigene Family Oligonucleotide Array Sequence Analysis Software User-Computer Interface |
| IF | 11.502 |
| 引用数 | 193 |
| WOS 分野 | BIOCHEMISTRY & MOLECULAR BIOLOGY |
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| 各媒体での言及数の合計 | 0 |
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