RRC ID 2600
著者 Toffin L, Bidault A, Pignet P, Tindall BJ, Slobodkin A, Kato C, Prieur D.
タイトル Shewanella profunda sp. nov., isolated from deep marine sediment of the Nankai Trough.
ジャーナル Int J Syst Evol Microbiol
Abstract A novel piezotolerant, mesophilic, facultatively anaerobic, organotrophic, polarly flagellated bacterium (strain LT13a(T)) was isolated from a deep sediment layer in the Nankai Trough (Leg 190, Ocean Drilling Program) off the coast of Japan. This organism used a wide range of organic substrates as sole carbon and energy sources: pyruvate, glutamate, succinate, fumarate, lactate, citrate, peptone and tryptone. Oxygen, nitrate, fumarate, ferric iron and cystine were used as electron acceptors. Maximal growth rates were observed at a hydrostatic pressure of 10 MPa. Hydrostatic pressure for growth was in the range 0.1-50 MPa. Predominant cellular fatty acids were 16 : 1omega7c, 15 : 0 iso, 16 : 0 and 13 : 0 iso. The G+C content of the DNA was 44.9 mol%. On the basis of 16S rRNA gene sequences, strain LT13a(T) was shown to belong to the gamma-Proteobacteria, being closely related to Shewanella putrefaciens (98 %), Shewanella oneidensis (97 %) and Shewanella baltica (96 %). Levels of DNA homology between strain LT13a(T) and S. putrefaciens, S. oneidensis and S. baltica were <20 %, indicating that strain LT13a(T) represents a novel species. Genetic evidence and phenotypic characteristics showed that isolate LT13a(T) constitutes a novel species of the genus Shewanella. Because of the deep origin of the strain, the name Shewanella profunda sp. nov. is proposed, with LT13a(T) (=DSM 15900(T)=JCM 12080(T)) as the type strain.
巻・号 54(Pt 6)
ページ 1943-1949
公開日 2004-11-1
DOI 10.1099/ijs.0.03007-0
PMID 15545415
MeSH Anaerobiosis Base Composition Cystine / metabolism DNA, Bacterial / chemistry DNA, Bacterial / isolation & purification DNA, Ribosomal / chemistry DNA, Ribosomal / isolation & purification Fatty Acids / analysis Fatty Acids / isolation & purification Ferric Compounds / metabolism Flagella Fumarates / metabolism Genes, rRNA Geologic Sediments / microbiology* Hydrostatic Pressure Japan Molecular Sequence Data Nitrates / metabolism Nucleic Acid Hybridization Organic Chemicals / metabolism Oxygen / metabolism Pacific Ocean Phylogeny RNA, Bacterial / genetics RNA, Ribosomal, 16S / genetics Sequence Analysis, DNA Shewanella / classification* Shewanella / cytology Shewanella / isolation & purification* Shewanella / physiology Temperature Water Microbiology*
IF 2.415
引用数 53
WOS 分野 MICROBIOLOGY
リソース情報
病原微生物 JCM 12080?