RRC ID 2657
著者 Kato Y, Asahara M, Arai D, Goto K, Yokota A.
タイトル Reclassification of Methylobacterium chloromethanicum and Methylobacterium dichloromethanicum as later subjective synonyms of Methylobacterium extorquens and of Methylobacterium lusitanum as a later subjective synonym of Methylobacterium rhodesianum.
ジャーナル J Gen Appl Microbiol
Abstract Phylogenetic analysis based on 16S rDNA sequences was performed on all type strains of the 14 validly described Methylobacterium species to ascertain the genealogic relationships among these species. The results showed that type strains of Methylobacterium were divided into two monophyletic groups whose members were distinct species with sequence similarity values greater than 97.0% between any two of the members in the same group. Only M. organophilum JCM 2833(T) and ATCC 27886(T) were not divided into those two groups. In particular, strains of M. dichloromethanicum and M. chloromethanicum exhibited extremely high similarity values (99.9 and 100%, respectively) with the type strain of M. extorquens. To clarify the relationships among Methylobacterium species in more detail, phylogenetic analysis based on the 5' end hyper-variable region of 16S rDNA (HV region), ribotyping analysis, fatty acid analysis, G+C content analysis and DNA-DNA hybridization experiments was performed on 58 strains of Methylobacterium species. Results of the ribotyping analysis and the phylogenetic analysis based on HV region sequences indicated that many Methylobacterium strains, including M. 'organophilum' DSM 760(T), have been erroneously identified. The DNA G+C content of Methylobacterium strains were between 68.1 and 71.3%. Results of whole-cell fatty-acid profiles showed that all strains contained 18 : 1omega7c as the primary fatty acid component (82.8-90.1%), with 16 : 0 and 18 : 0 as minor components. M. dichloromethanicum DSM 6343(T), M. chloromethanicum NCIMB 13688(T), and M. extorquens IAM 12631(T) exhibited high DNA-DNA relatedness values between each other (69-80%). M. lusitanum NCIMB 13779(T) also showed a close relationship with M. rhodesianum DSM 5687(T) at DNA-DNA relatedness levels of 89-92%. According to these results, many Methylobacterium strains should be reclassified, with M. dichloromethanicum and M. chloromethanicum regarded as a synonym of M. extorquens, and M. lusitanum a synonym for M. rhodesianum.
巻・号 51(5)
ページ 287-99
公開日 2005-10-1
DOI 10.2323/jgam.51.287
PII JST.JSTAGE/jgam/51.287
PMID 16314683
MeSH Bacterial Typing Techniques Base Composition DNA, Bacterial / analysis DNA, Ribosomal Fatty Acids / analysis Methylobacterium / chemistry Methylobacterium / classification* Methylobacterium / genetics Methylobacterium / metabolism Methylobacterium extorquens / chemistry Methylobacterium extorquens / classification* Methylobacterium extorquens / genetics Methylobacterium extorquens / metabolism Molecular Sequence Data Nucleic Acid Hybridization Phylogeny RNA, Ribosomal, 16S / genetics Ribotyping Sequence Analysis, DNA
IF 1.442
引用数 23
WOS 分野 BIOTECHNOLOGY & APPLIED MICROBIOLOGY MICROBIOLOGY
リソース情報
病原微生物 JCM 2833? JCM 2163? JCM 2815? JCM 2816? JCM 2807? JCM 2808? JCM 2809? JCM 2812? JCM 2813? JCM 2814? JCM 2827? JCM 2817? JCM 2834? JCM 2819? JCM 2820? JCM 2821? JCM 2822? JCM 2823? JCM 2824? JCM 2825? JCM 2818? JCM 2826? JCM 2803? JCM 8240? JCM 2810? JCM 2832? JCM 2830?