RRC ID 34386
Author Poddar A, Lepcha RT, Mukherjee D, Bhattacharyya D, Das SK.
Title Comparative analysis of 16S rRNA signature sequences of the genus Idiomarina and Idiomarina woesei sp. nov., a novel marine bacterium isolated from the Andaman Sea.
Journal Res Microbiol
Abstract A Gram-negative, short rod, aerobic bacterium, designated W11(T), was isolated from seawater. Heterotrophic growth was observed at 10-45 °C and pH 6-10. Optimal growth was observed at 30-37 °C and pH 7-9. It can grow in the presence of 0.5-12% NaCl (w/v), and the optimal NaCl required for growth was 5-6%. 16S rRNA gene sequence similarity revealed that strain W11(T) clustered within the radiation of the genus Idiomarina and showed 99.24% similarity with Idiomarina donghaiensis JCM 15533(T), 97.64% with Idiomarina marina JCM 15083(T), 97.37% with Idiomarina tainanensis JCM 15084(T) and 97.16% with Idiomarina maritima JCM 15534(T). DNA-DNA similarities between strains W11(T) with other closely related strains were below 70%. Polar lipids included a phosphatidylgylycerol, a diphosphatidylglycerol, a phosphatidylethanolamine, an unidentified phosopholipid, two unidentified aminolipids and two unidentified lipids. DNA G + C content was 41.2 ± 0.1 mol%. Major fatty acids were iso-C15:0, iso-C17:0, iso-C17:1ω9c, C16:0, iso-C11:0 3OH and C16:1ω7c/C16:1ω7c. The isoprenoid ubiquinone was Q8. On the basis of the present polyphasic taxonomic study, strain W11(T) is considered to represent a novel species of the genus Idiomarina, for which the name Idiomarina woesei sp. nov. is proposed. The type strain is W11(T) (= DSM 27808(T) = JCM 19499(T) = LMG 27903(T)).
Volume 165(7)
Pages 501-7
Published 2014-9-1
DOI 10.1016/j.resmic.2014.07.008
PII S0923-2508(14)00110-7
PMID 25078320
MeSH Aerobiosis Alteromonadaceae / classification* Alteromonadaceae / genetics Alteromonadaceae / isolation & purification* Alteromonadaceae / physiology Bacterial Typing Techniques Base Composition Cluster Analysis Cytosol / chemistry DNA, Bacterial / chemistry DNA, Bacterial / genetics DNA, Ribosomal / chemistry DNA, Ribosomal / genetics Fatty Acids / analysis Hydrogen-Ion Concentration Molecular Sequence Data Nucleic Acid Hybridization Oceans and Seas Phospholipids / analysis Phylogeny Quinones / analysis RNA, Ribosomal, 16S / genetics Seawater / microbiology* Sequence Analysis, DNA Sodium Chloride / metabolism Temperature
IF 3.217
Times Cited 10
WOS Category MICROBIOLOGY
Resource
General Microbes JCM 15533 JCM 15534 JCM 15083 JCM 15084 JCM 19499