RRC ID 35320
Author Pradipta AR, Fujimoto Y, Hasegawa M, Inohara N, Fukase K.
Title Characterization of natural human nucleotide-binding oligomerization domain protein 1 (Nod1) ligands from bacterial culture supernatant for elucidation of immune modulators in the environment.
Journal J Biol Chem
Abstract Nucleotide-binding oligomerization domain protein 1 (Nod1) is an intracellular protein involved in recognition of the bacterial component peptidoglycan. This recognition event induces a host defense response to eliminate invading pathogens. The genetic variation of Nod1 has been linked to several inflammatory diseases and allergies, which are strongly affected by environmental factors. We have found that many of the bacteria that contain DAP-type peptidoglycan release Nod1 ligands into the environment. However, the structures of natural Nod1 ligands in the environment are not well understood. Herein, we report the isolation and structural elucidation of natural human Nod1 (hNod1) ligands from the Escherichia coli K-12 culture supernatant. The supernatant was fractionated with reversed-phase high performance liquid chromatography (RP-HPLC), resulting in the isolation of several hNod1 stimulatory fractions. Structural characterization studies demonstrated that the molecular structure of the most active fraction was the native hNod1 ligand GlcNAc-(beta1-4)-(anhydro)MurNAc-l-Ala-gamma-d-Glu-meso-DAP. We also found other peptidoglycan fragments using the 7-(diethylamino)coumarin-3-carbonyl labeling method to enhance sensitivity in mass spectroscopy studies. These results suggested that DAP-containing bacteria release certain hNod1 ligands to the environment, and these ligands would accumulate in the environment and regulate the immune system through Nod1.
Volume 285(31)
Pages 23607-13
Published 2010-7-30
DOI 10.1074/jbc.M110.137893
PII M110.137893
PMID 20519512
PMC PMC2911303
MeSH Biological Assay / methods Chromatography, High Pressure Liquid / methods Escherichia coli / metabolism* Humans Immune System Inflammation Ligands Magnetic Resonance Spectroscopy Mass Spectrometry / methods Nod1 Signaling Adaptor Protein / metabolism* Nucleotides / chemistry* Peptides / chemistry Peptidoglycan / chemistry Protein Binding Protein Structure, Tertiary
IF 4.238
Times Cited 12
WOS Category BIOCHEMISTRY & MOLECULAR BIOLOGY
Resource
Prokaryotes E. coli K-12 strains?