RRC ID 37131
Author Shimura Y, Hirose Y, Misawa N, Osana Y, Katoh H, Yamaguchi H, Kawachi M.
Title Comparison of the terrestrial cyanobacterium Leptolyngbya sp. NIES-2104 and the freshwater Leptolyngbya boryana PCC 6306 genomes.
Journal DNA Res
Abstract The cyanobacterial genus Leptolyngbya is widely distributed throughout terrestrial environments and freshwater. Because environmental factors, such as oxygen level, available water content, and light intensity, vary between soil surface and water bodies, terrestrial Leptolyngbya should have genomic differences with freshwater species to adapt to a land habitat. To study the genomic features of Leptolyngbya species, we determined the complete genome sequence of the terrestrial strain Leptolyngbya sp. NIES-2104 and compared it with that of the near-complete sequence of the freshwater Leptolyngbya boryana PCC 6306. The greatest differences between these two strains were the presence or absence of a nitrogen fixation gene cluster for anaerobic nitrogen fixation and several genes for tetrapyrrole synthesis, which can operate under micro-oxic conditions. These differences might reflect differences in oxygen levels where these strains live. Both strains have the genes for trehalose biosynthesis, but only Leptolyngbya sp. NIES-2104 has genetic capacity to produce a mycosporine-like amino acid, mycosporine-glycine. Mycosporine-glycine has an antioxidant action, which may contribute to adaptation to terrestrial conditions. These features of the genomes yielded additional insights into the classification and physiological characteristics of these strains.
Volume 22(6)
Pages 403-12
Published 2015-12-1
DOI 10.1093/dnares/dsv022
PII dsv022
PMID 26494835
PMC PMC4675709
MeSH Cyanobacteria / classification Cyanobacteria / genetics* Fresh Water / microbiology* Genome, Bacterial* Nitrogen Fixation / genetics Phylogeny Trehalose / genetics
IF 4.009
Times Cited 18
WOS Category GENETICS & HEREDITY
Resource
Algae NIES-2104