Reference - Detail
| RRC ID | 48489 |
|---|---|
| Author | Dinesh B, Lau NS, Furusawa G, Kim SW, Taylor TD, Foong SY, Shu-Chien AC. |
| Title | Comparative genome analyses of novel Mangrovimonas-like strains isolated from estuarine mangrove sediments reveal xylan and arabinan utilization genes. |
| Journal | Mar Genomics |
| Abstract |
To date, the genus Mangrovimonas consists of only one species, Mangrovimonas yunxiaonensis strain LY01 that is known to have algicidal effects against harmful algal blooms (HABs) of Alexandrium tamarense. In this study, the whole genome sequence of three Mangrovimonas-like strains, TPBH4(T)(=LMG 28913(T),=JCM 30882(T)), ST2L12(T)(=LMG 28914(T),=JCM 30880(T)) and ST2L15(T)(=LMG 28915(T),=JCM 30881(T)) isolated from estuarine mangrove sediments in Perak, Malaysia were described. The sequenced genomes had a range of assembly size ranging from 3.56 Mb to 4.15 Mb which are significantly larger than that of M. yunxiaonensis LY01 (2.67 Mb). Xylan, xylose, L-arabinan and L-arabinose utilization genes were found in the genome sequences of the three Mangrovimonas-like strains described in this study. In contrast, these carbohydrate metabolism genes were not found in the genome sequence of LY01. In addition, TPBH4(T) and ST2L12(T) show capability to degrade xylan using qualitative plate assay method. |
| Volume | 25 |
| Pages | 115-121 |
| Published | 2016-2-1 |
| DOI | 10.1016/j.margen.2015.12.006 |
| PII | S1874-7787(15)30063-5 |
| PMID | 26795059 |
| MeSH | Bacterial Proteins / genetics Bacterial Proteins / metabolism Estuaries* Flavobacteriaceae / genetics* Genome, Bacterial* Geologic Sediments / microbiology* Phylogeny Polysaccharides / metabolism* Wetlands Xylans / metabolism* |
| IF | 1.672 |
| Times Cited | 8 |
| WOS Category | MARINE & FRESHWATER BIOLOGY GENETICS & HEREDITY |
| Altmetric score |
オルトメトリクス指標項目
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| The most frequently cited source | Patent(IFI CLAIMS) |
| Total number of mentions | 2 |
| Altmetric score changes over past 6months | 0.0 |
| Resource | |
| General Microbes | JCM 30882 JCM 30881 JCM 30880 |