RRC ID 50423
著者 Brozovic M, Martin C, Dantec C, Dauga D, Mendez M, Simion P, Percher M, Laporte B, Scornavacca C, Di Gregorio A, Fujiwara S, Gineste M, Lowe EK, Piette J, Racioppi C, Ristoratore F, Sasakura Y, Takatori N, Brown TC, Delsuc F, Douzery E, Gissi C, McDougall A, Nishida H, Sawada H, Swalla BJ, Yasuo H, Lemaire P.
タイトル ANISEED 2015: a digital framework for the comparative developmental biology of ascidians.
ジャーナル Nucleic Acids Res.
Abstract Ascidians belong to the tunicates, the sister group of vertebrates and are recognized model organisms in the field of embryonic development, regeneration and stem cells. ANISEED is the main information system in the field of ascidian developmental biology. This article reports the development of the system since its initial publication in 2010. Over the past five years, we refactored the system from an initial custom schema to an extended version of the Chado schema and redesigned all user and back end interfaces. This new architecture was used to improve and enrich the description of Ciona intestinalis embryonic development, based on an improved genome assembly and gene model set, refined functional gene annotation, and anatomical ontologies, and a new collection of full ORF cDNAs. The genomes of nine ascidian species have been sequenced since the release of the C. intestinalis genome. In ANISEED 2015, all nine new ascidian species can be explored via dedicated genome browsers, and searched by Blast. In addition, ANISEED provides full functional gene annotation, anatomical ontologies and some gene expression data for the six species with highest quality genomes. ANISEED is publicly available at: http://www.aniseed.cnrs.fr.
巻・号 44(D1)
ページ D808-18
公開日 2016-1-4
DOI 10.1093/nar/gkv966
PII gkv966
PMID 26420834
PMC PMC4702943
MeSH Animals Ciona intestinalis / embryology* Ciona intestinalis / genetics* Databases, Genetic* Embryonic Development / genetics Genomics Urochordata / anatomy & histology Urochordata / embryology* Urochordata / genetics*
カタユウレイボヤ・(ニッポンウミシダ) カタユウレイボヤ野生型