RRC ID 54222
著者 Troudet J, Vignes-Lebbe R, Grandcolas P, Legendre F.
タイトル The Increasing Disconnection of Primary Biodiversity Data from Specimens: How Does It Happen and How to Handle It?
ジャーナル Syst Biol
Abstract Primary biodiversity data represent the fundamental elements of any study in systematics and evolution. They are, however, no longer gathered as they used to be and the mass-production of observation-based (OB) occurrences is overthrowing the collection of specimen-based (SB) occurrences. Although this change in practice is a major upheaval with significant consequences in the study of biodiversity, it remains understudied and has not attracted yet the attention it deserves. Analyzing 536 million occurrences from the Global Biodiversity Information Facility (GBIF) mediated data, we show that this spectacular change affects the 24 eukaryote taxonomic classes we targeted: from 1970 to 2016 the proportion of occurrences marked as traceable to tangible material (i.e., SB occurrences) fell from 68% to 18%; moreover, most of those specimen based-occurrences cannot be readily traced back to a specimen because the necessary information is missing. Ethical, practical or legal reasons responsible for this shift are known, and this situation appears unlikely to be reversed. Still, we urge scholars to acknowledge this dramatic change, embrace it and actively deal with it. Specifically, we emphasize why SB occurrences must be gathered, as a warrant to allow both repeating evolutionary studies and conducting rich and diverse investigations. When impossible to secure, voucher specimens must be replaced with OB occurrences combined with ancillary data (e.g., pictures, recordings, samples, DNA sequences). Ancillary data are instrumental for the usefulness of biodiversity occurrences and we show that, despite improving technologies to collate them, they remain rarely shared. The consequences of such a change are not yet clear but we advocate collecting material evidence or ancillary data to ensure that primary biodiversity data collected lately do not partly become obsolete when doubtful.
巻・号 67(6)
ページ 1110-1119
公開日 2018-11-1
DOI 10.1093/sysbio/syy044
PII 5034972
PMID 29893962
MeSH Biodiversity* Classification / methods* Data Analysis / standards
IF 8.523
引用数 6
リソース情報
GBIF Hemichordata collection of National Museum of Nature and Science Chironomid Specimen records in the Chironomid DNA Barcode Database. Mollusca collection of National Museum of Nature and Science Hymenoptera specimen database of Kyushu University Echinoderm collection of National Museum of Nature and Science Xiphosuran collection of the National Museum of Nature and Science Aschelminth collection of National Museum of Nature and Science Insect species recorded in sugarcane fields of Khon Kaen Province, Thailand, over three seasons in 2012 Sipuncula collection of National Museum of Nature and Science Plant Specimen Database of Tama Forest Science Garden, Forestry and Forest Products Research Institute, Japan Migratory shorebirds (sandpipers and plovers) in Hokkaido Crustacean collection of the National Museum of Nature and Science Hemiptera (Heteroptera) collection of National Museum of Nature and Science Annelida collection of National Museum of Nature and Science Tardigrad collection of the National Museum of Nature and Science Kyushu University Museum Coleoptera Collection Type Collection of the Seto Marine Biological Laboratory, Kyoto University Invertebrate collection of the Seto Marine Biological Laboratory, Kyoto University Mollusca Collection of the Seto Marine Biological Laboratory, Kyoto University Biological Resource Center, Department of Biotechnology, National Institute of Technology and Evaluation Arthropoda Collection of the Seto Marine Biological Laboratory, Kyoto University Crustacea Collection of Natural History Museum and Institute, Chiba Cnidaria Collection of the Seto Marine Biological Laboratory, Kyoto University Marine Invertebrata specimens deposited in the Fukui City Museum of Natural History, Japan Insect Specimens Deposited in Saga Prefectural Space and Science Museum, JAPAN Seaweed (Plantae) Collection of the Seto Marine Biological Laboratory, Kyoto University Apterygota Collection of Saitama Museum of Natural History Bacteria Collection of the Seto Marine Biological Laboratory, Kyoto University Chromista Collection of the Seto Marine Biological Laboratory, Kyoto University Mollusca Collection of Saitama Museum of Natural History Vascular plants database of Atsugi City Museum Akita Prefectural Museum, Hiroki Watanabe Collection Herbarium, University Archives and Collections, Fukushima University, Japan (FKSE) Angiospermatatophytina Collection of Saitama Museum of Natural History Gymnospermatatophytina Collection of Saitama Museum of Natural History Bryophyta Collection of Saitama Museum of Natural History Bird Collection of Yokosuka City Museum Insect Collection of Yokosuka City Museum Birds collection of Abiko City Museum of Birds Image Database of Fishes in the Kanagawa Prefectural Museum of Natural History Echigo-Matsunoyama Museum of Natural Science, Usuke Shiga butterfly collection Vascular plant specimens of Iida City Museum Scleractinia specimens of Kuroshio Biological Research Foundation Mollusca Collection of Natural History Museum and Institute, Chiba Gorgonacea specimens of Kuroshio Biological Research Foundation AIS Wildtype Populations of Arabidopsis Bird specimens of the Yamashina Institute for Ornithology Ehime University Coleoptera Collection Sponge collection of National Museum of Nature and Science Mollusca specimens of Oiso Municipal Museum Specimens of Class Pycnogonida of Akita Prefectural Museum Insect specimens of Oiso Municipal Museum Algae collection of Museum of Natural and Environmental History, Shizuoka Specimens of Class Maxillopoda of Akita Prefectural Museum Plant specimens of Oiso Municipal Museum Flora of Japan Specimen Database Mollusk Collection of Yokosuka City Museum Bryozoans Specimens of Akita Prefectural Museum NIAES microbial inventory, "microForce" microbe collection, Tsukuba, National Institute for Agro-Environmental Sciences, Japan Fungal Collection of Natural History Museum and Institute, Chiba Brachiopods Specimens of Akita Prefectural Museum Specimens of Phylum Nemertea of Akita Prefectural Museum Reptiles Specimens of Akita Prefectural Museum Invertebrate specimens of Toyama Science Museum Millipedes Specimens of Akita Prefectural Museum Cnidarians Specimens of Akita Prefectural Museum Specimens of Phylum Porifera of Akita Prefectural Museum Crustacea specimens of Kuroshio Biological Research Foundation Entomological Specimens of Museum of Nature and Human Activities, Hyogo Pref., Japan Birds Specimens of Akita Prefectural Museum Arthropoda specimens of Toyama Science Museum Pycnogonidea specimens of Kuroshio Biological Research Foundation Platyhelminth collection of National Museum of Nature and Science Hagfishes Specimens of Akita Prefectural Museum Mollusca specimens of Kuroshio Biological Research Foundation Psocodea (Mallophaga) collection of National Museum of Nature and Science Herbarium of Hokkaido University Museum (SAPS) Cephalaspidomorphs Specimens of Akita Prefectural Museum Mollusca specimens of Toyama Science Museum Crustacea specimens of Toyama Science Museum Ascidians Specimens of Akita Prefectural Museum Fish specimens of Natural History Museum, Kishiwada City Fish collection of the Kagoshima University Museum Plant specimens of Natural History Museum, Kishiwada City Echinoderms Specimens of Akita Prefectural Museum Bryophyte Collection of Natural History Museum and Institute, Chiba Bird Specimens in the Museum of Nature and Human Activities, Hyogo, Japan Actinopterygius Specimens of Akita Prefectural Museum Amphibians Specimens of Akita Prefectural Museum Invertebrate specimens in the Wakayama Prefectural Museum of Natural History, Japan. Vascular Plant Collection of Natural History Museum and Institute, Chiba Centipedes Specimens of Akita Prefectural Museum Echinodermata specimens of Kuroshio Biological Research Foundation Echiurans Specimens of Akita Prefectural Museum Bryophytes specimens of Akita Prefectural Museum Bryophyte Collection of Museum of Natural and Environmental History, Shizuoka Herbarium Specimens of Museum of Nature and Human Activities, Hyogo Pref., Japan Insect Collection of Saitama Museum of Natural History Mammalians Specimens of Akita Prefectural Museum Marine specimens of Misaki Marine Biological Station, Graduate School of Science, The University of Tokyo Malacostracans Specimens of Akita Prefectural Museum Observation records of Amphibians Insect specimens of Natural Museum of Geihoku Annelids Specimens of Akita Prefectural Museum Pteridophyta specimens of Iwate Prefectural Museum Pteridophyta collection of Museum of Natural and Environmental History, Shizuoka Vascular Plants Specimens of Ehime Prefectural Science Museum Chondrichthyans Specimens of Akita Prefectural Museum Molluscus specimens of Toyohashi Museum of Natural History Crustacean specimens of Kitakyushu Museum of Natural History & Human History Ibaraki Nature Museum, Arthropoda collection Ibaraki Nature Museum, Mollusk collection Plant Specimens collections of the Kyushu University Museum Spermatophyta collection of Museum of Natural and Environmental History, Shizuoka Ibaraki Nature Museum, Mammals collection Vertebrate specimens of Kumamoto City Museum Ibaraki Nature Museum, Fish collection Ibaraki Nature Museum, Birds collection Marine Invertebrata specimen database of Osaka Museum of Natutal History Ibaraki Nature Museum, Bryophyta collection Ibaraki Nature Museum, Amphibians and Reptiles collection Ibaraki Nature Museum, Fungi collection Ibaraki Nature Museum, Algae collection Ibaraki Nature Museum, Lichen collection Shellfish specimens of the Nishinomiya Shell Museum, Japan Fish collection of the Museum of Nature and Human Activities, Hyogo Benthos collection of the Museum of Nature and Human Activities, Hyogo Akita Prefectural Museum, Observation Records of Birds in Akita Prefecture Ibaraki Nature Museum, Vascular Plants collection Japan Collection of Microorganisms, RIKEN BioResource Center RIKEN BioResource Center, Experimental Animal Division Fish Collection of Yokosuka City Museum Fish Collection of Hokkaido University Lichen specimens of National Museum of Nature and Science (TNS) Bryophyte specimens of National Museum of Nature and Science (TNS) Macroalgal collection of National Museum of Nature and Science (TNS) Vascular Plants Collection of National Museum of Nature and Science Vascular plant specimens of National Museum of Nature and Science (TNS) Myxomycete specimens of National Museum of Nature and Science (TNS) Insect specimens of Kashihara City Museum of Insect Plant Specimens of Kurashiki Museum of Natural History Herbarium Specimens of Tokushima Prefectural Museum, Japan Lepidoptera specimen database of Japan Fish Specimens of Tokushima Prefectural Museum, Japan Insect Specimen Database of Fukui City Museum of Natural History Insect specimens of Omogo Mountain Museum Fish Specimens of Graduate School of Bioresources Mie University Osaka Prefectural Minoh Park Insects Museum Bryophyte specimens of Iwate Prefectural Museum Herbarium of Kitakyushu Museum of Natural History and Human History Bryophyte specimens database of Mr. Tsutomu Kodama collection Fish specimen database of Osaka Museum of Natural History Hymenopteran specimen database of Osaka Museum of Natural History Fish collection of National Museum of Nature and Science Bird collection of National Museum of Nature and Science Mammal collection of National Museum of Nature and Science Freshwater Fish Specimens of Lake Biwa Museum Fish Collection of Natural History Museum and Institute, Chiba Plant Specimens of Lake Biwa Museum Spermatophyta specimens of Iwate Prefectural Museum Rust fungus specimen of Research Group of Plant Parasitic Mycology, Faculty of Life and Environmental Sciences, University of Tsukuba Herpetological collection of National Museum of Nature and Science Fish Collection of Kanagawa Prefectural Museum of Natural History Vascular Plants Collection of Sagamihara City Museum Fungi specimens of Kawasaki Municipal Science Museum Vascular plant specimens of Akita Prefectural Museum Mollusca collection, Museum of Natural and Environmental History, Shizuoka Plant specimens in the Museum of Nature and Human Activities, Hyogo Prefecture, Japan Insect specimens in the Museum of Nature and Human Activities, Hyogo Prefecture, Japan Freshwater Fish specimens of Taga Town Museum, Shiga Pref., Japan Freshwater shellfish specimens of Taga Town Museum, Shiga Pref., Japan Akita Prefectural Museum, Insect Collection Mammals specimens of Taga Town Museum, Shiga Pref., Japan Insect specimens of Taga Town Museum, Shiga Pref., Japan Plant specimens of Taga Town Museum, Shiga Pref., Japan Insect Specimens of Lake Biwa Museum Coleoptera specimen database of Osaka Museum of Natural History Lepidoptera specimen database of Osaka Museum of Natural History Insects specimen database of Osaka Museum of Natural History Araneidae specimen database of Osaka Museum of Natural History Arthropoda (excepting insect) collection of Osaka Museum of Natural History Invertebrate (minor phyla) collection of Osaka Museum of Natural History Molluscan collection of Osaka Museum of Natural History Plant specimens deposited in Osaka Museum of Natural History, Japan Insect collection of Itami City Museum of Insects Vascular Plant Specimens of Kochi Prefectural Makino Botanical Garden Plant Specimens of Wakayama Prefectural Museum of Natural History Zoological specimens of Gifu Prefectural Museum Plant Specimens of The Shimane Nature Museum of Mt. Sanbe Bryophyte specimens of The Nagoya University Museum Shellfish specimens of Miyazaki Prefecture Museum of Nature and History Bird specimens of Miyazaki Prefecture Museum of Nature and History Pycnogonid collection of the National Museum of Nature and Science Vascular Plant Specimen database of Kanagawa Prefectural Museum of Natural History Molluscan specimen database of Kanagawa Prefectural Museum of Natural History Mammal specimen database of Kanagawa Prefectural Museum of Natural History Orthoptera collection of Hiratsuka City Museum Insect specimen database of Atsugi City Museum Gunma Museum of Natural History, Vascular Plant Specimen Gunma Museum of Natural History, Fungi Specimen Gunma Museum of Natural History, Insect Specimen Gunma Museum of Natural History, Molluscan Specimen Gunma Museum of Natural History, Fish Specimen Gunma Museum of Natural History, Amphibia and Reptile Specimen Gunma Museum of Natural History, Mammal Specimen Insect Collection of Natural History Museum and Institute, Chiba Crustacean specimen database of Kanagawa Prefectural Museum of Natural History Fungi specimen database of Kanagawa Prefectural Museum of Natural History Bird specimen database of Kanagawa Prefectural Museum of Natural History Vascular plants collection of Hiratsuka City Museum Insecta collection of Museum of Natural and Environmental History, Shizuoka Monitoring records of plant species in the Hakone region of Fuji-Hakone-Izu National Park, Japan, 2001-2010 Protochordata collection of National Museum of Nature and Science NODAI Culture Collection Center, Tokyo University of Agriculture, Japan Tentaculata collection of National Museum of Nature and Science Genebank, National Institute of Agrobiological Sciences Coleoptera collection of National Museum of Nature and Science Kamptozoa collection of National Museum of Nature and Science Chaetognatha collection of National Museum of Nature and Science Microbial Culture Collection, National Institute for Environmental Studies Herbarium Specimens of Bonin and Ryukyu Islands Hemiptera (Homoptera) collection of National Museum of Nature and Science Hokkaido University Coleoptera Collection NIAES Coleoptera Specimen Database Lichen specimen database of Faurie collection Plant Observation Records of Japan Protozoa collection of National Museum of Nature and Science Insect collection of Biodiversity Center of Japan, Ministry of the Environment Tracheophyta collection of Biodiversity Center of Japan, Ministry of the Environment Ground Beetle of Japan Specimen Database Coelenterata (Cnidaria and Ctenophora) collection of National Museum of Nature and Science Mesozoa collection of National Museum of Nature and Science Kyoto University Reptile Collection