| RRC ID |
55533
|
| 著者 |
Takashima M, Sriswasdi S, Manabe RI, Ohkuma M, Sugita T, Iwasaki W.
|
| タイトル |
A Trichosporonales genome tree based on 27 haploid and three evolutionarily conserved 'natural' hybrid genomes.
|
| ジャーナル |
Yeast
|
| Abstract |
To construct a backbone tree consisting of basidiomycetous yeasts, draft genome sequences from 25 species of Trichosporonales (Tremellomycetes, Basidiomycota) were generated. In addition to the hybrid genomes of Trichosporon coremiiforme and Trichosporon ovoides that we described previously, we identified an interspecies hybrid genome in Cutaneotrichosporon mucoides (formerly Trichosporon mucoides). This hybrid genome had a gene retention rate of ~55%, and its closest haploid relative was Cutaneotrichosporon dermatis. After constructing the C. mucoides subgenomes, we generated a phylogenetic tree using genome data from the 27 haploid species and the subgenome data from the three hybrid genome species. It was a high-quality tree with 100% bootstrap support for all of the branches. The genome-based tree provided superior resolution compared with previous multi-gene analyses. Although our backbone tree does not include all Trichosporonales genera (e.g. Cryptotrichosporon), it will be valuable for future analyses of genome data. Interest in interspecies hybrid fungal genomes has recently increased because they may provide a basis for new technologies. The three Trichosporonales hybrid genomes described in this study are different from well-characterized hybrid genomes (e.g. those of Saccharomyces pastorianus and Saccharomyces bayanus) because these hybridization events probably occurred in the distant evolutionary past. Hence, they will be useful for studying genome stability following hybridization and speciation events. Copyright © 2017 John Wiley & Sons, Ltd.
|
| 巻・号 |
35(1)
|
| ページ |
99-111
|
| 公開日 |
2018-1-1
|
| DOI |
10.1002/yea.3284
|
| PMID |
29027707
|
| MeSH |
Basidiomycota / genetics*
Biological Evolution*
Genome, Fungal*
Haploidy*
Hybridization, Genetic*
Yeasts / genetics*
|
| IF |
2.395
|
| 引用数 |
8
|
| リソース情報 |
| 一般微生物 |
JCM 1599
JCM 9941
JCM 10018
JCM 2947
JCM 9937
JCM 1458
JCM 10691
JCM 14201
JCM 1532
JCM 1462
JCM 31833
JCM 11166
JCM 11170
JCM 10690
JCM 9939
JCM 1530
JCM 1457
JCM 12878
JCM 11965
JCM 2961
JCM 13614
JCM 9039
JCM 2466 |
