| RRC ID |
66284
|
| Author |
Fang BZ, Xie YG, Zhou XK, Zhang XT, Liu L, Jiao JY, Xiao M, Li WJ.
|
| Title |
Lysobacter prati sp. nov., isolated from a plateau meadow sample.
|
| Journal |
Antonie Van Leeuwenhoek
|
| Abstract |
A novel proteobacterial strain designated SYSU H10001T was isolated from a soil sample collected from plateau meadow in Hongyuan county, Sichuan province, south-western China. The taxonomic position of the strain was investigated using a polyphasic approach. On the basis of 16S rRNA gene sequence similarities and phylogenetic analysis, strain SYSU H10001T was most closely related to Lysobacter soli KCTC 22011T (98.6%, sequence similarity) and Lysobacter panacisoli JCM 19212T (98.2%). The prediction result of secondary metabolites based on genome shown that the strain SYSU H10001T contained 3 clusters of bacteriocins, 1 cluster of non-ribosomal peptide synthetase, 1 cluster of type 1 polyketide synthase and 1 cluster of arylpolyene. In addition, the major isoprenoid quinone was Q-8 and the major fatty acids were identified as iso-C15:0, iso-C17:0 and Summed feature 9. The polar lipids contained diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, and three unidentified phospholipids. The genomic DNA G + C content of strain SYSU H10001T was 66.5% (genome). On the basis of phenotypic, genotypic and phylogenetic data, strain SYSU H10001T represents a novel species of the genus Lysobacter, for which the name Lysobacter prati sp. nov. is proposed. The type strain is SYSU H10001T (= KCTC 72062T = CGMCC 1.16662T).
|
| Volume |
113(6)
|
| Pages |
763-772
|
| Published |
2020-6-1
|
| DOI |
10.1007/s10482-020-01386-6
|
| PII |
10.1007/s10482-020-01386-6
|
| PMID |
31980979
|
| MeSH |
Anti-Bacterial Agents / biosynthesis
Bacteriocins / biosynthesis
Bacteriocins / genetics
China
Fatty Acids / analysis
Genes, Bacterial
Genome, Bacterial
Grassland
Lysobacter* / classification
Lysobacter* / genetics
Lysobacter* / isolation & purification
Phylogeny
RNA, Ribosomal, 16S / genetics
Secondary Metabolism
|
| Resource |
| General Microbes |
JCM19212 |
