RRC ID 66299
著者 Hameed A, Shahina M, Lin SY, Chen WM, Hsu YH, Lai WA, Young CC.
タイトル Description of Gemmobacter aestuarii sp. nov., isolated from estuarine surface water and reclassification of Cereibacter changlensis as Gemmobacter changlensis Chen et al. 2013.
ジャーナル Arch Microbiol
Abstract A Gram-stain-negative, tyrosine-metabolizing, non-motile, strictly aerobic, non-spore-forming, rod-shaped marine bacterium, designated strain CC-PW-75T, was isolated from the estuarine water off Pintung, Taiwan. Strain CC-PW-75T formed a distinct phyletic lineage associated with Gemmobacter species, sharing the highest 16S rRNA gene sequence similarity with G. megaterium CF17T and G. straminiformis CAM-8T (96.0% each) followed by G. aquatilis IFAM 1031T and G. nectariphilus AST4T (95.8% each). Analysis of the draft genome (3.76 Mbp) revealed the presence of genes encoding light-harvesting complexes, photosynthetic reaction centers and proteins involved in the metabolism of CO, CO2, HCO3 and H2S. However, bacteriochlorophyll a was not detected. Average nucleotide identity values between the genome sequence of CC-PW-75T and the related Gemmobacter species (n = 6) were estimated to be 72.8-76.3%. Polar lipid analysis revealed the presence of phosphatidylglycerol, phosphatidylethanolamine and an unidentified lipid in major amounts, and phosphatidylmonomethylethanolamine, phosphatidylcholine, an unidentified aminolipid and an unidentified lipid in minor amounts. C18:1ω7c and/or C18:1ω6c, C18:0 and C18:1ω7c 11-methyl were identified to be major fatty acids. The DNA G + C content was 66.2 mol% (draft genome sequence). Ubiquinone-10 (Q-10) was the sole respiratory quinone. Based on the polyphasic taxonomic evidence, CC-PW-75T is most likely a novel species of the genus Gemmobacter, affiliated to the family Rhodobacteraceae, for which the name Gemmobacter aestuarii sp. nov. is proposed. The type strain is CC-PW-75T (= JCM 19754T = BCRC 80759T). Also, we propose the reclassification of Cereibacter changlensis as Gemmobacter changlensis Chen et al. 2013 using the polyphasic data presented in this study.
巻・号 202(5)
ページ 1035-1042
公開日 2020-7-1
DOI 10.1007/s00203-020-01809-y
PII 10.1007/s00203-020-01809-y
PMID 31950211
MeSH Bacterial Typing Techniques Base Composition / genetics DNA, Bacterial / genetics Estuaries Fatty Acids / analysis Phospholipids / analysis Phylogeny RNA, Ribosomal, 16S / genetics Rhodobacteraceae / classification* Rhodobacteraceae / genetics Rhodobacteraceae / isolation & purification* Rhodobacteraceae / metabolism Sequence Analysis, DNA Taiwan Ubiquinone / analogs & derivatives Ubiquinone / metabolism Water
リソース情報
一般微生物 JCM19754 JCM14338