RRC ID 68286
著者 Raxworthy CJ, Smith BT.
タイトル Mining museums for historical DNA: advances and challenges in museomics.
ジャーナル Trends Ecol Evol
Abstract Historical DNA (hDNA), obtained from museum and herbarium specimens, has yielded spectacular new insights into the history of organisms. This includes documenting historical genetic erosion and extinction, discovering species new to science, resolving evolutionary relationships, investigating epigenetic effects, and determining origins of infectious diseases. However, the development of best-practices in isolating, processing, and analyzing hDNA remain under-explored, due to the substantial diversity of specimen preparation types, tissue sources, archival ages, and collecting histories. Thus, for hDNA to reach its full potential, and justify the destructive sampling of the rarest specimens, more experimental work using time-series collections, and the development of improved methods to correct for data asymmetries and biases due to DNA degradation are required.
巻・号 36(11)
ページ 1049-1060
公開日 2021-8-26
DOI 10.1016/j.tree.2021.07.009
PII S0169-5347(21)00214-7
解説 J-OBIS data were referenced. NIES data were referenced. BiodiC-J data were referenced.
PMID 34456066
MeSH Biological Evolution DNA* / genetics Museums* Sequence Analysis, DNA / methods Specimen Handling / methods
リソース情報
GBIF Hemichordata collection of National Museum of Nature and Science Fern (Pteridophyta) specimens of Toyama Science Museum Insect specimens of Natural History Museum, Kishiwada City Butterfly Specimens of Yamaguchi Prefectural Yamaguchi Museum Nemertean specimens of Ryukyu University Museum (Fujukan) Chironomid Specimen records in the Chironomid DNA Barcode Database. Insect Specimens of the Yamagata Prefectural Museum Insect specimens of Bihoro Museum Insect Specimens of Ibaraki University (Faculty of Science) Bird specimens of Natural History Museum, Kishiwada City Occurrence data of seagrasses in Southeast Asia extracted from literature The Masayo Kato Insect Collection (Hymenoptera) of The University Museum, The University of Tokyo Sipuncula collection of National Museum of Nature and Science Ogasawara DNA barcode database Invertebrate specimens (except for arthropods and mollusca) of Natural History Museum, Kishiwada City Gunma Museum of Natural History, Bryophyta Specimen Echinodermata Specimens of the Yamagata Prefectural Museum Amphibian specimens of Obihiro Centennial City Museum Plant Specimen Database of Tama Forest Science Garden, Forestry and Forest Products Research Institute, Japan Araneae collection of Kanagawa Prefectural Museum of Natural History Mammal specimens of Oiso Municipal Museum Insect specimens of Obihiro Centennial City Museum Marine Biological Sample Database, JAMSTEC Ascidiacea specimens of Ryukyu University Museum (Fujukan) Plant specimens of Otaru Museum Kelp Dataset The Shigeru Eda Insect Collection of The University Museum, The University of Tokyo Specimen based records and geographic locations of carabid beetles (Coleoptera) collected mainly by Dr. Kazuo Tanaka Insect specimen database of Kanagawa Prefectural Museum of Natural History Arthropod specimens of Natural History Museum, Kishiwada City Herpetological specimens of Okinawa Prefectural Museum & Art Museum Crustacean collection of the National Museum of Nature and Science Hemiptera (Heteroptera) collection of National Museum of Nature and Science Vascular plant specimens of Iida City Museum Scleractinia specimens of Kuroshio Biological Research Foundation Gorgonacea specimens of Kuroshio Biological Research Foundation Flora of Japan Specimen Database Bird Specimens of The Cattle Museum Ehime University Coleoptera Collection Flatworm specimens of Ryukyu University Museum (Fujukan) Molluscan specimens of Bihoro Museum Sponge collection of National Museum of Nature and Science Bryophyte specimens of Nagano Environmental Conservation Research Institute, Nagano Prefecture Plankton&BenthosResearch Bird specimens of Tochigi Prefectural Museum Specimens of Class Pycnogonida of Akita Prefectural Museum Insect specimens of Oiso Municipal Museum Specimens of Class Maxillopoda of Akita Prefectural Museum Plant specimens of Oiso Municipal Museum Mollusk Collection of Yokosuka City Museum Bryozoans Specimens of Akita Prefectural Museum Fungal Collection of Natural History Museum and Institute, Chiba Brachiopods Specimens of Akita Prefectural Museum Specimens of Phylum Nemertea of Akita Prefectural Museum Reptiles Specimens of Akita Prefectural Museum Invertebrate specimens of Toyama Science Museum Millipedes Specimens of Akita Prefectural Museum Cnidarians Specimens of Akita Prefectural Museum Avian Specimens of the Yamagata Prefectural Museum Specimens of Phylum Porifera of Akita Prefectural Museum Insect specimens of Okinawa Prefectural Museum & Art Museum Crustacea specimens of Kuroshio Biological Research Foundation Birds Specimens of Akita Prefectural Museum Arthropoda specimens of Toyama Science Museum Plant specimens of Horaiji-san Museum of Natural History Toji K. collection Pycnogonidea specimens of Kuroshio Biological Research Foundation Hagfishes Specimens of Akita Prefectural Museum Amphibian Specimens of the Yamagata Prefectural Museum Mammalian Specimens of the Yamagata Prefectural Museum Reptile specimens of Yamagata Prefectural Museum JAMSTEC_MULTISPLASH2006_SagamiBay_Siphonophora Plant specimens of Ishikawa Museum of Natural History Diptera collection of National Museum of Nature and Science Crabs from Vietnam and Indonesia Crustacean Specimens of the Yamagata Prefectural Museum Lancelet specimens of Ryukyu University Museum (Fujukan) Mollusca collection of National Museum of Nature and Science Mollusca specimens of Kuroshio Biological Research Foundation Mollusca specimens of Okinawa Prefectural Museum & Art Museum Cnidarian Specimens of the Yamagata Prefectural Museum Herbarium of Hokkaido University Museum (SAPS) Pteridophyte specimens of Okinawa Prefectural Museum & Art Museum Cephalaspidomorphs Specimens of Akita Prefectural Museum Crustacea specimens of Toyama Science Museum Ascidians Specimens of Akita Prefectural Museum Fish collection of the Kagoshima University Museum Ascidian Specimens of the Yamagata Prefectural Museum Echinoderms Specimens of Akita Prefectural Museum Annelida collection of National Museum of Nature and Science Insect Specimens of Gunma Insect World Bryophyte Collection of Natural History Museum and Institute, Chiba Captive Primate Specimens of Japan Monkey Centre Bryophyte specimens of Kanagawa Prefectural Museum of Natural History Tardigrad collection of the National Museum of Nature and Science Fungi specimens of Saitama Museum of Natural History Cnidaria specimens of Ryukyu University Museum (Fujukan) Plant specimens of Komatsu City Museum Bryophyte Specimens of Ishikawa Museum of Natural History (ISKW) Insect specimens of Himeji City Science Museum Nagoya-Mammals Kyushu University Museum Coleoptera Collection Plant Specimens of The Cattle Museum Spermatophyte collection of Himeji City Science Museum Fish Specimens of the Yamagata Prefectural Museum The Suguru Igarashi Insect Collection (Lepidoptera: Papilionidae) of The University Museum, The University of Tokyo Bird specimens of Okinawa Prefectural Museum & Art Museum Actinopterygius Specimens of Akita Prefectural Museum Plant specimens of Toyota City Nature Sanctuary Insect specimens of Sugadaira Montane Research Center, University of Tsukuba Amphibians Specimens of Akita Prefectural Museum Plant specimens of Tochigi Prefectural Museum Mammal specimens of Okinawa Prefectural Museum & Art Museum Vascular Plant Collection of Natural History Museum and Institute, Chiba The Araneae Collection of the National Museum of Nature and Science Plant specimens of Nasunogahara Museum Vascular Plant Specimens of Yamagata Prefectural Museum Ferns and Lycophytes Specimens of Kawasaki Municipal Science Museum Centipedes Specimens of Akita Prefectural Museum Shallow-water fauna of Sagami Bay Kinorhyncha specimens of Ryukyu University Museum (Fujukan) Echinodermata specimens of Kuroshio Biological Research Foundation Insect specimens of Otaru Museum Insect specimens of Kaizuka City Museum of Natural History Annelid Specimens of the Yamagata Prefectural Museum Fish specimens of Bihoro Museum Reptile specimens of Kanagawa Prefectural Museum of Natural History Insect specimens of Yonezawa Insectarium Arachnid specimens of Okinawa Prefectural Museum & Art Museum Insect specimens of Rikuzen-Takata City Museum Insect specimens of Iwate Prefectural Museum Echiurans Specimens of Akita Prefectural Museum The Acari Collection of the National Museum of Nature and Science Insect specimens of Toyota City Nature Sanctuary Nagoya-Plants Amphibian specimens of Kanagawa Prefectural Museum of Natural History Asia-Pacific Dataset Bryophytes specimens of Akita Prefectural Museum Hymenoptera specimen database of Kyushu University Bryophyte Collection of Museum of Natural and Environmental History, Shizuoka Type Collection of the Seto Marine Biological Laboratory, Kyoto University Echinoderm collection of National Museum of Nature and Science Herbarium Specimens of Museum of Nature and Human Activities, Hyogo Pref., Japan The Suguru Igarashi Insect Collection (Lepidoptera: Lycaenidae) of The University Museum, The University of Tokyo Invertebrate collection of the Seto Marine Biological Laboratory, Kyoto University Lichen specimens of Okinawa Prefectural Museum & Art Museum Bird specimens of Kawasaki Municipal Science Museum Insect Collection of Saitama Museum of Natural History Spermatophyta Specimens of Kawasaki Municipal Science Museum Algae specimens of Ryukyu University Museum (Fujukan) Mammalians Specimens of Akita Prefectural Museum Mollusca Collection of the Seto Marine Biological Laboratory, Kyoto University Mammal specimens of Ryukyu University Museum (Fujukan) Xiphosuran collection of the National Museum of Nature and Science Aschelminth collection of National Museum of Nature and Science Arthropoda Collection of the Seto Marine Biological Laboratory, Kyoto University Cnidaria Collection of the Seto Marine Biological Laboratory, Kyoto University Seaweed (Plantae) Collection of the Seto Marine Biological Laboratory, Kyoto University Bacteria Collection of the Seto Marine Biological Laboratory, Kyoto University Chromista Collection of the Seto Marine Biological Laboratory, Kyoto University Birds collection of Abiko City Museum of Birds Akita Prefectural Museum, Hiroki Watanabe Collection Marine specimens of Misaki Marine Biological Station, Graduate School of Science, The University of Tokyo Mollusca Collection of Natural History Museum and Institute, Chiba Herbarium, University Archives and Collections, Fukushima University, Japan (FKSE) Malacostracans Specimens of Akita Prefectural Museum Bird specimens of the Yamashina Institute for Ornithology Crustacean specimens of Bihoro Museum Crustacea specimens of Wakayama Prefectural Museum of Natural History Bryophytes specimens of Okinawa Prefectural Museum & Art Museum Annelids Specimens of Akita Prefectural Museum Angiospermatatophytina Collection of Saitama Museum of Natural History Gymnospermatatophytina Collection of Saitama Museum of Natural History Pteridophyta specimens of Iwate Prefectural Museum Mollusca specimens of Oiso Municipal Museum Pteridophyta collection of Museum of Natural and Environmental History, Shizuoka Bryophyta Collection of Saitama Museum of Natural History Bird Collection of Yokosuka City Museum NIAES microbial inventory, "microForce" microbe collection, Tsukuba, National Institute for Agro-Environmental Sciences, Japan Insect Collection of Yokosuka City Museum Algae collection of Museum of Natural and Environmental History, Shizuoka Chondrichthyans Specimens of Akita Prefectural Museum Echigo-Matsunoyama Museum of Natural Science, Usuke Shiga butterfly collection Bird specimens of Himeji City Science Museum Molluscus specimens of Toyohashi Museum of Natural History Ibaraki Nature Museum, Arthropoda collection Ibaraki Nature Museum, Mollusk collection Freshwater Fish Specimens of Lake Biwa Museum Spermatophyta collection of Museum of Natural and Environmental History, Shizuoka Fish Collection of Natural History Museum and Institute, Chiba Ibaraki Nature Museum, Mammals collection Ibaraki Nature Museum, Fish collection Plant Specimens of Lake Biwa Museum Spermatophyta specimens of Iwate Prefectural Museum Ibaraki Nature Museum, Birds collection Insects Specimens of Kagoshima Prefectural Museum Ibaraki Nature Museum, Bryophyta collection Rust fungus specimen of Research Group of Plant Parasitic Mycology, Faculty of Life and Environmental Sciences, University of Tsukuba Herpetological collection of National Museum of Nature and Science Ibaraki Nature Museum, Amphibians and Reptiles collection Fish Collection of Kanagawa Prefectural Museum of Natural History Myriapod Specimens of the Yamagata Prefectural Museum Ibaraki Nature Museum, Fungi collection Vascular Plants Collection of Sagamihara City Museum Ibaraki Nature Museum, Algae collection Ibaraki Nature Museum, Lichen collection Fungi specimens of Kawasaki Municipal Science Museum Reptile specimens of Takatsuki Nature Museum (Aquapia Akutagawa) Lichen specimens of Saitama Museum of Natural History Shellfish specimens of the Nishinomiya Shell Museum, Japan Mollusca collection, Museum of Natural and Environmental History, Shizuoka Plant specimens in the Museum of Nature and Human Activities, Hyogo Prefecture, Japan Fish collection of the Museum of Nature and Human Activities, Hyogo Spider specimens of Kushiro City Museum Insect specimens in the Museum of Nature and Human Activities, Hyogo Prefecture, Japan Freshwater Fish specimens of Taga Town Museum, Shiga Pref., Japan Mammal specimens of Obihiro Centennial City Museum Freshwater shellfish specimens of Taga Town Museum, Shiga Pref., Japan Mammals specimens of Taga Town Museum, Shiga Pref., Japan Psocodea (Mallophaga) collection of National Museum of Nature and Science Insect specimens of Taga Town Museum, Shiga Pref., Japan Sipunculan Specimens of the Yamagata Prefectural Museum Benthos collection of the Museum of Nature and Human Activities, Hyogo Bryozoa Specimens of the Yamagata Prefectural Museum The Suguru Igarashi Insect Collection (Lepidoptera: Hesperiidae) of The University Museum, The University of Tokyo Bird specimens of Obihiro Centennial City Museum The Keiichi Omoto Butterfly Collection(Papilionidae), The University Museum, The University of Tokyo Plant specimens of Taga Town Museum, Shiga Pref., Japan Ibaraki Nature Museum, Vascular Plants collection Entomological Specimens of Museum of Nature and Human Activities, Hyogo Pref., Japan Insect specimens of Sagamihara City Museum Vascular plant specimens of Omachi Alpine Museum Fish Collection of Yokosuka City Museum Lepidoptera collection of National Museum of Nature and Science Fish Collection of Hokkaido University Lichen specimens of National Museum of Nature and Science (TNS) Platyhelminth collection of National Museum of Nature and Science Bryophyte specimens of National Museum of Nature and Science (TNS) Macroalgal collection of National Museum of Nature and Science (TNS) Vascular plant specimens of National Museum of Nature and Science (TNS) Myxomycete specimens of National Museum of Nature and Science (TNS) Insect specimens of Kashihara City Museum of Insect Plant Specimens of Kurashiki Museum of Natural History Herbarium Specimens of Tokushima Prefectural Museum, Japan Fish Specimens of Tokushima Prefectural Museum, Japan Insect Specimen Database of Fukui City Museum of Natural History Insect specimens of Omogo Mountain Museum Fish Specimens of Graduate School of Bioresources Mie University Osaka Prefectural Minoh Park Insects Museum Bird specimens of Kushiro City Museum Herbarium of Kitakyushu Museum of Natural History and Human History Bryophyte specimens database of Mr. Tsutomu Kodama collection Fish specimen database of Osaka Museum of Natural History Hymenopteran specimen database of Osaka Museum of Natural History Fish collection of National Museum of Nature and Science Bird collection of National Museum of Nature and Science Mammal collection of National Museum of Nature and Science JODC Dataset Mollusca specimens of Toyama Science Museum Insect Specimens of Lake Biwa Museum Coleoptera specimen database of Osaka Museum of Natural History Lepidoptera specimen database of Osaka Museum of Natural History Fish specimens of Natural History Museum, Kishiwada City Insects specimen database of Osaka Museum of Natural History Araneidae specimen database of Osaka Museum of Natural History Ground Beetle of Japan Specimen Database Arthropoda (excepting insect) collection of Osaka Museum of Natural History Plant specimens of Natural History Museum, Kishiwada City Mammal specimens of Toyota City Nature Sanctuary Amphibian specimens of Toyama Science Museum Plant specimens of the Museum of Yamagata University Invertebrate (minor phyla) collection of Osaka Museum of Natural History Bird Specimens in the Museum of Nature and Human Activities, Hyogo, Japan Invertebrate specimens in the Wakayama Prefectural Museum of Natural History, Japan. Molluscan collection of Osaka Museum of Natural History Plant specimens deposited in Osaka Museum of Natural History, Japan Insect collection of Itami City Museum of Insects Vascular Plant Specimens of Kochi Prefectural Makino Botanical Garden Plant Specimens of Wakayama Prefectural Museum of Natural History Zoological specimens of Gifu Prefectural Museum Plant Specimens of The Shimane Nature Museum of Mt. Sanbe Bryophyte specimens of The Nagoya University Museum Plant specimens of Toyota City Nature Sanctuary (from non-museum circle) Brown algae specimens of Komatsu City Museum Shellfish specimens of Miyazaki Prefecture Museum of Nature and History Vascular plant specimens of Toyama Science Museum Bird specimens of Miyazaki Prefecture Museum of Nature and History Pycnogonid collection of the National Museum of Nature and Science Crustacean specimens of Kaizuka City Museum of Natural History Plant specimens of Kiritappu Wetland Center Neuroptera collection of National Museum of Nature and Science Insect specimens of Komatsu City Museum Fungal specimens of Faculty of Agriculture and Life Science, Hirosaki University A Specimen List of Hymenophyllaceae of Seram and Ambon collected on Indonesian-Japanese botanical expeditions 1983–1986 Insect specimens of Natural Museum of Geihoku Diversity and community structure of pelagic cnidarians in south-east Asian tropical marginal Seas Insect specimens of Toyama Science Museum Vascular Plants Specimens of Ehime Prefectural Science Museum Specimen records of spiders (Arachnida: Araneae) by monthly census for 3 years in forest areas of Yakushima Island, Japan Gunma Museum of Natural History, Arachnid Specimens Insecta Specimens of Kawasaki Municipal Science Museum Plant specimens of Takatsuki Nature Museum (Aquapia Akutagawa) Mammal specimens of Komatsu City Museum Crustacean specimens of Kitakyushu Museum of Natural History & Human History Mammal specimens of Kawasaki Municipal Science Museum Molluscan specimens of Kaizuka City Museum of Natural History Plant Specimens collections of the Kyushu University Museum Mammal specimens of Natural History Museum, Kishiwada City Insect specimens of Ryukyu University Museum (Fujukan) Vascular Plant Specimen database of Kanagawa Prefectural Museum of Natural History Vertebrate specimens of Kumamoto City Museum Coelenterata (Cnidaria and Ctenophora) collection of National Museum of Nature and Science Molluscan specimen database of Kanagawa Prefectural Museum of Natural History Mammal specimen database of Kanagawa Prefectural Museum of Natural History Mesozoa collection of National Museum of Nature and Science Orthoptera collection of Hiratsuka City Museum Insect specimens of Kushiro City Museum Kyoto University Reptile Collection Insect specimen database of Atsugi City Museum Gunma Museum of Natural History, Vascular Plant Specimen Gunma Museum of Natural History, Fungi Specimen Gunma Museum of Natural History, Insect Specimen Marine Invertebrata specimen database of Osaka Museum of Natutal History Gunma Museum of Natural History, Molluscan Specimen Gunma Museum of Natural History, Fish Specimen Echinoderm specimens of Ryukyu University Museum (Fujukan) Gunma Museum of Natural History, Amphibia and Reptile Specimen Gunma Museum of Natural History, Mammal Specimen Vascular Plants Collection of National Museum of Nature and Science Insect Collection of Natural History Museum and Institute, Chiba Crustacean specimen database of Kanagawa Prefectural Museum of Natural History Fungi specimen database of Kanagawa Prefectural Museum of Natural History Odonata Specimens of Yamaguchi prefectural Yamaguchi Museum Bird specimen database of Kanagawa Prefectural Museum of Natural History Fungal Specimens of National Museum of Nature and Science (TNS) Sakurai Insect Specimens Collection of Tamarokuto Science Center Vascular plants collection of Hiratsuka City Museum Insecta collection of Museum of Natural and Environmental History, Shizuoka Insect specimens of Mie Prefectural Museum Annelida specimens of Ryukyu University Museum (Fujukan) Plant specimens of Kushiro City Museum Dry specimens of Recent Mollusca in the Department of Historical Geology and Paleontology, The University Museum, The University of Tokyo (UMUT) Gunma Museum of Natural History, Crustacea Specimens Mollusca specimens of Ryukyu University Museum (Fujukan) Bird specimens of Komatsu City Museum Brachiopoda Specimens of the Yamagata Prefectural Museum Lepidoptera specimen database of Japan Insect specimens of Nasunogahara Museum Algae specimens of Kanagawa Prefectural Museum of Natural History Fish specimens of Takatsuki Nature Museum (Aquapia Akutagawa) Mammal specimens of Takatsuki Nature Museum (Aquapia Akutagawa) Plant specimens of Horaiji-san Museum of Natural History Kichi T. collection Protochordata collection of National Museum of Nature and Science Coleoptera Specimens of Yamaguchi prefectural Yamaguchi Museum The Myriapoda Collection of the National Museum of Nature and Science Fish specimens of Okinawa Prefectural Museum & Art Museum Spermatophytes collection of Okinawa Prefectural Museum & Art Museum Other Arachnida collection of National Museum of Nature and Science Odonata collection of National Museum of Nature and Science Bryophyte specimens of Iwate Prefectural Museum Vascular plant specimens of Akita Prefectural Museum Akita Prefectural Museum, Insect Collection Crustacea Collection of Natural History Museum and Institute, Chiba Tentaculata collection of National Museum of Nature and Science Marine Invertebrata specimens deposited in the Fukui City Museum of Natural History, Japan Pogonophoran collection of the National Museum of Nature and Science Lepidopterous specimens of Yamagata Prefectural Museum Insect Specimens Deposited in Saga Prefectural Space and Science Museum, JAPAN Apterygota Collection of Saitama Museum of Natural History Mollusca specimens of Manazuru Shell Museum Mollusca specimens of Natural History Museum, Kishiwada City Amphibian specimens of Takatsuki Nature Museum (Aquapia Akutagawa) Mollusca Collection of Saitama Museum of Natural History Herpetological (amphibian & reptile) specimens of Ryukyu University Museum (Fujukan) Coleoptera collection of National Museum of Nature and Science Fish Collection of Coastal Branch of Natural History Museum and Institute, Chiba Vascular plants database of Atsugi City Museum Insect specimens of Tokushima Prefectural Museum Bird specimens of Toyota City Nature Sanctuary Insect specimens of Hokkaido University Hymenoptera collection of National Museum of Nature and Science Gastropod Specimens of the Yamagata Prefectural Museum Kamptozoa collection of National Museum of Nature and Science Bird specimens of Takatsuki Nature Museum (Aquapia Akutagawa) Plant specimens of Bihoro Museum Bird specimens of Bihoro Museum Fish specimens of Kaizuka City Museum of Natural History Chaetognatha collection of National Museum of Nature and Science The Kojiro Shiraishi Insect Collection of The University Museum, The University of Tokyo Chromistal specimens of Kanagawa Prefectural Museum of Natural History Plant specimens of Mie Prefectural Museum Crustacea specimens of Okinawa Prefectural Museum & Art Museum Bird specimens of Oiso Municipal Museum Herbarium Specimens of Bonin and Ryukyu Islands Insect specimens of Tochigi Prefectural Museum The Suguru Igarashi Insect Collection (Lepidoptera: Pieridae) of The University Museum, The University of Tokyo Hemiptera (Homoptera) collection of National Museum of Nature and Science Fish specimens of Ryukyu University Museum (Fujukan) The Masayo Kato Insect Collection (Lepidoptera: Rhopalocera) of The University Museum, The University of Tokyo The Insect Collection of Prof. Chûjirô Sasaki and associated researchers, The University Museum, The University of Tokyo. Hokkaido University Coleoptera Collection Vascular plant specimens of Sugadaira Research Station, Mountain Science Center, University of Tsukuba NIAES Coleoptera Specimen Database The Masao Oita Insect Collection of The University Museum, The University of Tokyo Lichen specimen database of Faurie collection Bryophyte specimens of Toyama Science Museum Specimen-based records of geometrid, pyralid, and crambid moths (Lepidoptera) with location information from the collection of Dr. Hiroshi Inoue Crustacea specimens of Ryukyu University Museum (Fujukan) Porifera Specimens of the Yamagata Prefectural Museum Bird specimens of Saitama Museum of Natural History Fish specimens of Toyama Science Museum Herbarium of Shinshu University Plant specimens of Parthenon Tama Museum (PTHM) Plant specimens of Obihiro Centennial City Museum Vascular plant specimens of Nagano Environmental Conservation Research Institute, Nagano Prefecture The Yasunori Kishida Insect Collection (Coleoptera: Disteniidae and Cerambycidae) of The University Museum, The University of Tokyo Bird specimens of Ryukyu University Museum (Fujukan) Mammal specimens of Saitama Museum of Natural History Botanical Specimens of Kaizuka City Museum of Natural History (KCMN) Protozoa collection of National Museum of Nature and Science Insect collection of Biodiversity Center of Japan, Ministry of the Environment Hymenoptera Specimens of Yamaguchi prefectural Yamaguchi Museum Tracheophyta collection of Biodiversity Center of Japan, Ministry of the Environment Fungal specimens of Komatsu City Museum Arachnid specimens of Ryukyu University Museum (Fujukan) Mollusca specimens of Wakayama Prefectural Museum of Natural History Vascular plant specimens of The Shirakami Research Center for Environmental Sciences, Hirosaki University Diptera Specimens of Yamaguchi prefectural Yamaguchi Museum Hemiptera Specimens of Yamaguchi prefectural Yamaguchi Museum Vascular plant specimens of Aomori City Forestry Museum Asahikawa Educational College herbarium