論文 - 詳細
| RRC ID | 7009 |
|---|---|
| 著者 | Mulet M, Lalucat J, García-Valdés E. |
| タイトル | DNA sequence-based analysis of the Pseudomonas species. |
| ジャーナル | Environ Microbiol |
| Abstract |
Partial sequences of four core 'housekeeping' genes (16S rRNA, gyrB, rpoB and rpoD) of the type strains of 107 Pseudomonas species were analysed in order to obtain a comprehensive view regarding the phylogenetic relationships within the Pseudomonas genus. Gene trees allowed the discrimination of two lineages or intrageneric groups (IG), called IG P. aeruginosa and IG P. fluorescens. The first IG P. aeruginosa, was divided into three main groups, represented by the species P. aeruginosa, P. stutzeri and P. oleovorans. The second IG was divided into six groups, represented by the species P. fluorescens, P. syringae, P. lutea, P. putida, P. anguilliseptica and P. straminea. The P. fluorescens group was the most complex and included nine subgroups, represented by the species P. fluorescens, P. gessardi, P. fragi, P. mandelii, P. jesseni, P. koreensis, P. corrugata, P. chlororaphis and P. asplenii. Pseudomonas rhizospherae was affiliated with the P. fluorescens IG in the phylogenetic analysis but was independent of any group. Some species were located on phylogenetic branches that were distant from defined clusters, such as those represented by the P. oryzihabitans group and the type strains P. pachastrellae, P. pertucinogena and P. luteola. Additionally, 17 strains of P. aeruginosa, 'P. entomophila', P. fluorescens, P. putida, P. syringae and P. stutzeri, for which genome sequences have been determined, have been included to compare the results obtained in the analysis of four housekeeping genes with those obtained from whole genome analyses. |
| 巻・号 | 12(6) |
| ページ | 1513-30 |
| 公開日 | 2010-6-1 |
| DOI | 10.1111/j.1462-2920.2010.02181.x |
| PII | EMI2181 |
| PMID | 20192968 |
| MeSH | Base Sequence Molecular Sequence Data Phylogeny Pseudomonas* / classification Pseudomonas* / genetics RNA, Ribosomal, 16S / analysis RNA, Ribosomal, 16S / genetics Sequence Analysis, DNA* |
| IF | 4.933 |
| 引用数 | 311 |
| WOS 分野 | MICROBIOLOGY |
| オルトメトリクス指標 |
オルトメトリクス指標項目
|
| 最多言及媒体 | Wikipedia |
| 各媒体での言及数の合計 | 6 |
| 過去6か月間でのオルトメトリクス指標の変動値 | 0.0 |
| リソース情報 | |
| 一般微生物 | JCM 14761 |