RRC ID 70090
著者 Escamilla Molgora JM, Sedda L, Diggle PJ, Atkinson PM.
タイトル A taxonomic-based joint species distribution model for presence-only data.
ジャーナル J R Soc Interface
Abstract Species distribution models (SDMs) are an important class of model for mapping taxa spatially and are a key tool for tackling biodiversity loss. However, most common SDMs depend on presence-absence data and, despite the accumulation and exponential growth of biological occurrence data across the globe, the available data are predominantly presence-only (i.e. they lack real absences). Although presence-only SDMs do exist, they inevitably require assumptions about absences of the considered taxa and they are specified mostly for single species and, thus, do not exploit fully the information in related taxa. This greatly limits the utility of global biodiversity databases such as GBIF. Here, we present a Bayesian-based SDM for multiple species that operates directly on presence-only data by exploiting the joint distribution between the multiple ecological processes and, crucially, identifies the sampling effort per taxa which allows inference on absences. The model was applied to two case studies. One, focusing on taxonomically diverse taxa over central Mexico and another focusing on the monophyletic family Cactacea over continental Mexico. In both cases, the model was able to identify the ecological and sampling effort processes for each taxon using only the presence observations, environmental and anthropological data.
巻・号 19(187)
ページ 20210681
公開日 2022-2-23
DOI 10.1098/rsif.2021.0681
PMID 35193392
PMC PMC8864348
MeSH Bayes Theorem Biodiversity* Ecosystem*
リソース情報
GBIF Mollusca collection of National Museum of Nature and Science Hymenoptera specimen database of Kyushu University Biological Resource Center, Department of Biotechnology, National Institute of Technology and Evaluation Seaweed (Plantae) Collection of the Seto Marine Biological Laboratory, Kyoto University Mollusca Collection of Natural History Museum and Institute, Chiba Bird specimens of the Yamashina Institute for Ornithology Flora of Japan Specimen Database Entomological Specimens of Museum of Nature and Human Activities, Hyogo Pref., Japan Mollusca specimens of Toyama Science Museum Bird Specimens in the Museum of Nature and Human Activities, Hyogo, Japan Invertebrate specimens in the Wakayama Prefectural Museum of Natural History, Japan. Lepidoptera specimen database of Japan Marine Invertebrata specimens deposited in the Fukui City Museum of Natural History, Japan Akita Prefectural Museum, Hiroki Watanabe Collection Image Database of Fishes in the Kanagawa Prefectural Museum of Natural History Echigo-Matsunoyama Museum of Natural Science, Usuke Shiga butterfly collection Ehime University Coleoptera Collection Molluscus specimens of Toyohashi Museum of Natural History Shellfish specimens of the Nishinomiya Shell Museum, Japan Japan Collection of Microorganisms, RIKEN BioResource Center Fish Collection of Yokosuka City Museum Fish Collection of Hokkaido University Lichen specimens of National Museum of Nature and Science (TNS) Macroalgal collection of National Museum of Nature and Science (TNS) Insect specimens of Kashihara City Museum of Insect Osaka Prefectural Minoh Park Insects Museum Fish specimen database of Osaka Museum of Natural History Fish collection of National Museum of Nature and Science Mammal collection of National Museum of Nature and Science Fish Collection of Natural History Museum and Institute, Chiba Rust fungus specimen of Research Group of Plant Parasitic Mycology, Faculty of Life and Environmental Sciences, University of Tsukuba Fish Collection of Kanagawa Prefectural Museum of Natural History Mollusca collection, Museum of Natural and Environmental History, Shizuoka Plant specimens in the Museum of Nature and Human Activities, Hyogo Prefecture, Japan Molluscan collection of Osaka Museum of Natural History Plant specimens deposited in Osaka Museum of Natural History, Japan Insect collection of Itami City Museum of Insects Coleoptera collection of National Museum of Nature and Science NIAES Coleoptera Specimen Database